G495502


Basic Information

Item Value
gene id G495502
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30501931 ~ 30518414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU562958
TTCAATCCATTCTAAATGAGTATACATGTGTTCTCTAGTTTTTGCAACAGTTAATCTTTTTTGCATGAAGTTGGTTTATGTCGTCACCTCCATGGTCTGAAGTTCTACTGAGTCCTCCCTCTCCTTGACTCCACTCAGCCTGTCACTGTGTAGAAGGAAGCATTAGAACTGGCTCAATCTCTTTTTGGTTTTAGGGAGCGGGGATGGAACGGGGGTGGGCGGTGTTGAGGAAAAATACtattaaaaaaaacacagcctAGCCAGTGAAGCCACGATGTTGTCTCAGAGAGTTGTCTAACTACCCCTCTACAACCATAGATCCTCATCGCCCCAGTCTGCTTTCCCTGTCTACCACCTCCACAAGTCTCCAGACCCAACCCCATTACATCCAGACTTAAAGACTGTAGGCCCACACTGTGTGCACACAAATGACCAGATACAGAAACCAAACTAAGAAGCATAATGAATGTATAATGTATGTTTGTCTGGTTTTCCTTAAGCTCTTACTGAGCCGACCTTAAGCAGTCACATGGAGGTGCTTCACCATTCCTCTTTCTGCTGCCCCCGTAGCTTTGACCCAGTCAAGGTGGGGTCATAAACATGATATGTATTAATGGtgcagagggagggatagatgatCAAATGTCTCAAAACAACAACTTGACTTTTATAcgtgctctctttctcttgctcgtTCCCTCATTCTGATTATGCATGGATGGGTTATATGGGCGACATATCTATTCATATGTGTTCAGTGTTATACAGTTTCTTAAACAACAACAGATCCCGAGTTCAATAGATAGGCTAAACAGTCTGGCGTCTAGCCTACCTAGTCAACTAATATGTACAGAGCAAGAACTTACATTCATTACCTGTGGCTACAGAGGCTGATAAACCATGGGCCTGGACTGGAGACTAATTTCAATGTCTGGGTATTATTATTGCAGAGTGTTCGTTCATATACTCTCTGGAGTGTTTGAGACACACGTTTTCCTACGATATGAGCAACGTAATGCATCAAGATCCGTTACGATACAATGCCAAGAGGATGTAGAGCATTACATCTAATCTACATGATGTAGGATTGCATACTGTACTGAGGTAACACTACTGTAAACCATGTTTAAATCAGGGTAGGGACCGAAGAACCTCGGTTTAATGTCCACCAATAGTGTCGTATCACCTTCACACCCATGCCAATTCACCGCCCTCAACCCTGCACTGTCATTTTGTCAACACTAAATGACGCTGTACGGTGTCAGTCTCAATTGTACTTACAATCAGTGGactcattatacacacacacacacacacacacacacacacacacacgctcgcatacacacacatgcacgcacacttTAGAATTTCTCCTTAGAATTAAATATGAATGCCATTAAGGCTTAAAAGAACAATGAGTGGACACTTTTAGATGGCTTGCATAAACCTCAGGGAATGGCTATTCTTTGCCACCCAACCTTCAAACACACACGATCAAAAACCAAACACTGTTGGGACTGGGAGAAAAACACTTGAAGAAAACAGCTCTCAAATAATGCAAACCAGTAACTCAGTCCACCAACTTGTCTCCTTTGTCTACTTTGTGCAACCAACATGGAAGTGATTTATGTTCCACGCAGGTCAAGTGGATAGCAGGAGGCTGATTGGGGCTCTGACATCTCTCCTAATCGGACAGTACATCTAAGGTAAAAGTAGTTAGAATgcctatacTCTTTCGACCAATGTTATTGCTTTCCTTTAAACAAACACCAGACAATACATTTCTGATGGGAAAAGGGGTAGGGGTGTACAGACATCAGGAGAGGgttgagaggaaaggagacaggTTTGTGGTGGGGTTGTGTGGGCTCACAGTTGTGGGTCAGTATTACAGTTTCTTATCACAGTGATTGGTGGCTGGTTGTCTTCGCTAGTCTACTGAGAGTTGCCAACAAAACAAGCAACACTTACAATCCCAACACTTTCAAATCTCTGTAGATAcccacctctccctgactgactaTCACATGTAACCAGCTTAACCAGTGCTACATTATTACCTGTAGTGGTGAAGTTACTTCTTTACCCTTATCGAATGATGGGTAGATGCTGAGATGATCTGTAAACCCTCTTGGATATATCCTGTGATATCAGACTGACAATCTGACAATTGCTGTGTGACAGACACACCAGAGGGGAGATGCTACATTAATTAGGGGGACTCTGACCCCTGCTGGTAATGAACAGAACTGCTACATAATATCCATATTGAGAGGGATAGAACAGGACTGCTGCATCTACACCGAAAGGCtgggggagtggagggaggcagggcagggcagggtgtGCAGTGCAGGGAGAATGGGGTGTGAGGATGGGGTGTAGAGATGACTGAGGTGGGTGGGCTGCATACATACATGCAGATGGTGGTGACAGGACCGCCAGACAAACTGGACTATAGCTGCACACATATAGCAGGGTAGGTGAAAGGTCTATCCAACGTTCTCATGATTGCCCCAGCCTTTACTCCAATTACATTCACCCTGGAAACACACAAACCACTCCAGGGAGGTTGGTTGTGGGGTTGGGGAGGAAAGTCAACACAGAACCTCCTTTTTCTAAAACACAAAGAACCGTGAAATGTCTCTGAAGCCAGTAATGCCCTCTAGGTGAGATGACGACAGCAAAGGGAGGCATCACATGAAaatcacaaaataacaaataaCCGGACACACAAAAATGGACAGATAAAACAGGCAGAACGACACAgaggtttgttttgtttgttctcaTACCCACCAGATCTCAAGATATATAGAACATATACGCATAGAGTTAACCAAACAAGAACACCAGAGCAGAAGAATCGTTTAGGTGTCTGAAACAGCAGCATCATTAGCATCACATAGGGTTATGGTGAAATTAAACACAGGTAACACTCAGTCACGTAGCATTTCAGTGCAGATAGAATGTACAACACCAATATCCCAAATGTAGGCTACTGGAGTGGGACAGTGAAGGGCTGAAACCAGCCTGTGATGTATTTAATCTTTTTTTTGCTGGAAGAGTctgttcagtgtgacagggagggagagtgacCTGTTGCCTAGAGATAATTCTGAGTATTTTGACAGTCTCCCTTTTCAGAAGTTTCACAAACAAACACTGCCCTGTTTCTTTAGAAAGGGGACGTATGACATAATCACCTTGCCCTAAACCCCAACATGGCCTCCTATCCAATACaggagtgaccccccccccccccccccccccacaaccccTAGTACTGTAGTGAAAGACAGGCCATGCGCCAGCAGTCATTCATGCTGATACATATAACAGGAAGCACGTTTTGGTtgctattttttttgttgtctgtgTTTGGTTTTGTTTTATACGAAATCATGCACCTAGCCTAGTAGTTGACATTTTTGGattgtttctttttttaaaaaGGTAAGAAAACTAGGAGTAAATCCACTTCGCTCTCGTGATCGTCGGCTTTGCCGTGGTGGTTGTTGTTATTATGAAGTTAGTGTTTTGTTCGTTCCaatctctcttcttttctctccattattctcctcctcttcattccTCCTGTCACCTGCCGCCGGTCATGTGTCTAAGTAGGATTGTTTTGGTG
>TU562960
TTGTGCTGAACAGAGTTCCCCCGGGAGTAGTGGAGTAGTCGTTGGGCATGTGCGAGGCGTCGTTTATGGTCACCCGCCTGGTCGGAATGGCCTTGCTAGTAGTGGTCTTCTGACAGCCCGTAGACATCTTCAAAACACAGGGGCGTTTGCTAATAACTACAAATTGGACAACTTAACTAAATATCTTGGACCTGAAAAACAACAAAGCAAACAACGTGCCCTGTTGCTGCTTCCTCAATTATTTGCTTTGGGTCGTTAGCAAGCTAATtcctaaataaaaacaaatactttattTTGTCATAAGTGCAAATAATGTTGAATATCTAAACTAACCACACAcacacacacacatacacatattaagACCTACTCTTTCGACCAATGTTATTGCTTTCCTTTAAACAAACACCAGACAATACATTTCTGATGGGAAAAGGGGTAGGGGTGTACAGACATCAGGAGAGGgttgagaggaaaggagacaggTTTGTGGTGGGGTTGTGTGGGCTCACAGTTGTGGGTCAGTATTACAGTTTCTTATCACAGTGATTGGTGGCTGGTTGTCTTCGCTAGTCTACTGAGAGTTGCCAACAAAACAAGCAACACTTACAATCCCAACACTTTCAAATCTCTGTAGATAcccacctctccctgactgactaTCACATGTAACCAGCTTAACCAGTGCTACATTATTACCTGTAGTGGTGAAGTTACTTCTTTACCCTTATCGAATGATGGGTAGATGCTGAGATGATCTGTAAACCCTCTTGGATATATCCTGTGATATCAGACTGACAATCTGACAATTGCTGTGTGACAGACACACCAGAGGGGAGATGCTACATTAATTAGGGGGACTCTGACCCCTGCTGGTAATGAACAGAACTGCTACATAATATCCATATTGAGAGGGATAGAACAGGACTGCTGCATCTACACCGAAAGGCtgggggagtggagggaggcagggcagggcagggtgtGCAGTGCAGGGAGAATGGGGTGTGAGGATGGGGTGTAGAGATGACTGAGGTGGGTGGGCTGCATACATACATGCAGATGGTGGTGACAGGACCGCCAGACAAACTGGACTATAGCTGCACACATATAGCAGGGTAGGTGAAAGGTCTATCCAACGTTCTCATGATTGCCCCAGCCTTTACTCCAATTACATTCACCCTGGAAACACACAAACCACTCCAGGGAGGTTGGTTGTGGGGTTGGGGAGGAAAGTCAACACAGAACCTCCTTTTTCTAAAACACAAAGAACCGTGAAATGTCTCTGAAGCCAGTAATGCCCTCTAGGTGAGATGACGACAGCAAAGGGAGGCATCACATGAAaatcacaaaataacaaataaCCGGACACACAAAAATGGACAGATAAAACAGGCAGAACGACACAgaggtttgttttgtttgttctcaTACCCACCAGATCTCAAGATATATAGAACATATACGCATAGAGTTAACCAAACAAGAACACCAGAGCAGAAGAATCGTTTAGGTGTCTGAAACAGCAGCATCATTAGCATCACATAGGGTTATGGTGAAATTAAACACAGGTAACACTCAGTCACGTAGCATTTCAGTGCAGATAGAATGTACAACACCAATATCCCAAATGTAGGCTACTGGAGTGGGACAGTGAAGGGCTGAAACCAGCCTGTGATGTATTTAATCTTTTTTTTGCTGGAAGAGTctgttcagtgtgacagggagggagagtgacCTGTTGCCTAGAGATAATTCTGAGTATTTTGACAGTCTCCCTTTTCAGAAGTTTCACAAACAAACACTGCCCTGTTTCTTTAGAAAGGGGACGTATGACATAATCACCTTGCCCTAAACCCCAACATGGCCTCCTATCCAATACaggagtgaccccccccccccccccccccccacaaccccTAGTACTGTAGTGAAAGACAGGCCATGCGCCAGCAGTCATTCATGCTGATACATATAACAGGAAGCACGTTTTGGTtgctattttttttgttgtctgtgTTTGGTTTTGTTTTATACGAAATCATGCACCTAGCCTAGTAGTTGACATTTTTGGattgtttctttttttaaaaaGGTAAGAAAACTAGGAGTAAATCCACTTCGCTCTCGTGATCGTCGGCTTTGCCGTGGTGGTTGTTGTTATTATGAAGTTAGTGTTTTGTTCGTTCCaatctctcttcttttctctccattattctcctcctcttcattccTCCTGTCACCTGCCGCCGGTCATGTGTCTAAGTAGGATTGTTTTGGTG

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562958 False 3646 lncRNA 0.44 3 30501931 30505646
TU562960 True 2282 lncRNA 0.44 3 30501931 30518414

Neighbor

gene id symbol gene type direction distance location
LOC118965020 NA coding downstream 176985 30311060 ~ 30324946 (-)
sftpbb LOC106585263 coding downstream 292341 30199594 ~ 30209590 (-)
LOC110525709 LOC106585264 coding downstream 310116 30189572 ~ 30191815 (-)
LOC110525706 NA coding downstream 394236 30102891 ~ 30141156 (-)
LOC110525703 LOC106585270 coding downstream 521153 29976158 ~ 29980778 (-)
LOC110525714 LOC106585251 coding upstream 7620 30526034 ~ 30527686 (-)
LOC110525715 tco2 coding upstream 18852 30537266 ~ 30553741 (-)
si:ch211-102c2.8 LOC106585256 coding upstream 43007 30561421 ~ 30579113 (-)
LOC110525719 LOC106580333 coding upstream 61064 30579478 ~ 30656421 (-)
LOC110525721 LOC106584972 coding upstream 144535 30662949 ~ 30686072 (-)
G495520 LOC106585259 non-coding downstream 30611 30471105 ~ 30471320 (-)
G495518 NA non-coding downstream 32751 30468974 ~ 30469180 (-)
G495516 NA non-coding downstream 33292 30468417 ~ 30468639 (-)
G495480 NA non-coding downstream 51941 30378245 ~ 30449990 (-)
G495504 NA non-coding downstream 57788 30428525 ~ 30444143 (-)
G495505 LOC106585258 non-coding upstream 3592 30522006 ~ 30523381 (-)
G495540 NA non-coding upstream 9860 30528274 ~ 30528571 (-)
G495543 NA non-coding upstream 12733 30531147 ~ 30531348 (-)
G495546 NA non-coding upstream 15938 30534352 ~ 30534597 (-)
G494542 NA other downstream 826358 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 998540 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 1018585 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 1086617 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2666629 27827231 ~ 27885634 (-)
G495554 NA other upstream 26988 30545402 ~ 30549450 (-)
G495560 NA other upstream 56704 30575118 ~ 30575573 (-)
G496772 NA other upstream 1142979 31661393 ~ 31661618 (-)
G496777 NA other upstream 1152564 31670978 ~ 31671927 (-)

Expression


Co-expression Network