G495505 (LOC106585258)


Basic Information

Item Value
gene id G495505
gene name LOC106585258
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30522006 ~ 30523381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU562964
GGTTTTATTTTCTTTATTGATTCTTCTTACAAACCATGTGAAAATGTAGTTTTTTGTCTCAAATTTCTCTATATATAGTTTTTACAGTCCTTTGTATGACAATCTTTTTATCTGAAAAAAATAATAGTATTTTGAAGGCAGTGAAGTGTGGATAACCCATGATAAGATTGATTTGAGTGGCAAAATAATTttaaagaatgaaagaaattgaATCTTTACCACCACACCGCTCCTCTGGAGCAATCTTTTTCAGTGTTGCTGCTGGCTCCACAAGAGAAAGGCCCCAGAGGTGAGTCAAGAGGGTAACACTTCATTCACACGCCTGAACCACCTTCGTGTTATTTTACAGTAACAATACAGCTGATATTTAAAGTTAACAAACCGCAACTAATGGACTCATCTGTAAACACAGAAGGTGACAATATTGTAGCAAGTCTGGGTGGGGGATTGGTTGGGCCTCTTCTTCAGCATCATGGTAGTAAGTGAAGTTGTTTCACATCCCTCTTGAATGCTCATTCCACCAACAGTTAGATGTCCATTTCAAACTGTGCATCGTcacCAGTGCTTTTGTCAGCAGGTGCAGTGATGTTGTTGTTCAGTGGCTCTCTGTTATGGGCCTTTACATTGTTGATGTGTTTGGAGGGTGGGCTGGTGACCCCTGGAATGTTGGGGAGAGAGCACGGTGGAGTCCTGGCCAGCGGGGAACTGCGGCACTCCAGCAGGAACTTCCGGTCGTAGATGATTCTTGTacctgaggggagaggagggtatgaGATGTTCATGTAAATTGAATGGATCGAACAGATCGTACATTGGCGCACAATCCCACCATATAGGACTAGTACTCATCCTGTTCTGCAGTCAGATTTGGTTCAAAGCCTGCAGCTAAACCACATACACTGAAGGTTGTGTAATCTTGTTTAACCCATACCTGAAATTTAGCATCATTTGGTCAGATGCCTTATTTGTTTTATGTAGTCTTTCCATTAGAGATTAGGTACAATGCCTCTTTCTCACTGTGACGTGTGAGCTTACAGTTGTTCTGAAACACTGAGGTGTttgactgaacaaaaa

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562964 True 1074 lncRNA 0.42 2 30522006 30523381

Neighbor

gene id symbol gene type direction distance location
LOC118965020 NA coding downstream 197060 30311060 ~ 30324946 (-)
sftpbb LOC106585263 coding downstream 312416 30199594 ~ 30209590 (-)
LOC110525709 LOC106585264 coding downstream 330191 30189572 ~ 30191815 (-)
LOC110525706 NA coding downstream 414311 30102891 ~ 30141156 (-)
LOC110525703 LOC106585270 coding downstream 541228 29976158 ~ 29980778 (-)
LOC110525714 LOC106585251 coding upstream 2653 30526034 ~ 30527686 (-)
LOC110525715 tco2 coding upstream 13885 30537266 ~ 30553741 (-)
si:ch211-102c2.8 LOC106585256 coding upstream 38040 30561421 ~ 30579113 (-)
LOC110525719 LOC106580333 coding upstream 56097 30579478 ~ 30656421 (-)
LOC110525721 LOC106584972 coding upstream 139568 30662949 ~ 30686072 (-)
G495502 NA non-coding downstream 3592 30501931 ~ 30518414 (-)
G495520 LOC106585259 non-coding downstream 50686 30471105 ~ 30471320 (-)
G495518 NA non-coding downstream 52826 30468974 ~ 30469180 (-)
G495516 NA non-coding downstream 53367 30468417 ~ 30468639 (-)
G495480 NA non-coding downstream 72016 30378245 ~ 30449990 (-)
G495540 NA non-coding upstream 4893 30528274 ~ 30528571 (-)
G495543 NA non-coding upstream 7766 30531147 ~ 30531348 (-)
G495546 NA non-coding upstream 10971 30534352 ~ 30534597 (-)
G495578 NA non-coding upstream 93632 30617013 ~ 30617233 (-)
G494542 NA other downstream 846433 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 1018615 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 1038660 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 1106692 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2686704 27827231 ~ 27885634 (-)
G495554 NA other upstream 22021 30545402 ~ 30549450 (-)
G495560 NA other upstream 51737 30575118 ~ 30575573 (-)
G496772 NA other upstream 1138012 31661393 ~ 31661618 (-)
G496777 NA other upstream 1147597 31670978 ~ 31671927 (-)

Expression


Co-expression Network