G496640


Basic Information

Item Value
gene id G496640
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31400634 ~ 31409115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU564246
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagt
>TU564247
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagt
>TU564241
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgt
>TU564242
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgt
>TU564243
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgt
>TU564244
ACATAGTCTTAAACAAAATTGATCAATTAGAACATCTTATTCAATGACATCACACATTCGTACATTTATCACATTCATTCTGGCCACAACACAAAGCGGACTTTTCAGTCCAACTAACAATTAATCTATTGTAGACACCTCACCGGACACTACCGGCTATTGGATTTTACCTCACCGGACACTACCGGCTATTGGTTTTCTCTAAAACACTAATTGAATTTATCTTTTGCAGATGGATGATCGAATCACACTCAGATGTTAATGATAAAACTGATCACGCCCTTTTTCAGACGCCCGAACGAATATCACTTATACAAAGAATATAATCCTGATCACATCAATACTCAATAATAGACCACCTTACCAGACACAGCTGGACCGGTCACTAGCCGGACTATCGGTGAAAATCTATCCTAGACTATATTTTATTCCTTACTGGTGTCTGCCACCAGACCGTTCACAGCCGGACTATCAGAATATTCTattaatattaggtctactactacatatcccttaccggtgtctgccaccggaccgttcTCATGCCGGACTATCGGAATATTCTAACTACTACTCatcccttaccggtgtctgccaccggaccgttcTCATGCCGGACTATCGGGATATTCTAATTACCACATATGTTTACTTCACTGTCAATTTCAAGTCCATTATTTATGTAAAATTTACACAAAAATTCTTACCCACACTCGGTACTACTGATCGTAATTTGGTATGACTATTCGACAATATGCAAAGTTTGATAAAACAGGTTTTGCTTACCTTATTTTGTGGTCGACCAGAGATCAGTTTCCCGAGTTGAGCAGAATTGTTGTCCACCCCCGAATGGTTTTCACCTGTCCTCCGGGAACCGTCCTTTCACCAACTCGCCCCCTCACACCCACATCAACCACTCTGGACTGGGTCGTTAgtaaaccatcctctgctaccaagtttctgttgataatgggatatgtaggagggtgagccggtcaaggatcgattcagacaaggtggtctattgtatgacaagtgacagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgt
>TU564245
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgt
>TU564240
acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagcagtaggctggtcacctgcataagaaatagcacttccttacaaaTCCCTCTCTTCACGTCTCCCCAGAGACGTGACACAACCTAACTATATCCAGACACAAAAAGAAAACTTTTCCCAGAAGGAAAAGTTTTGTGATTCCCTCTCTTCACATCTCCTAAGAGATGTGACATAAACTAGGCTAACAATTACAAAGTTGAAATACCTTCATGTTCTCCATTCGATCCCACTATGTACTAGATTGGCTACCAGCCACCTAGGAACTTACAACCCTCATGTCAAAAGAGAACAACAGCTCATtgaaaaacagaacaaaagaaAATGGTGTGAAATTTAAGCCCCCCTTTTTGACACCCACTAGGGTGTCACTCATTATCCCTTATTTCAGCAGTCATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAATGGAGGAGACCAGGGTTTTATATTTACCAAAGGCACTCATCCAGGAGTCCCACATTGAGGTATCAATCCCAGAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU564246 False 445 lncRNA 0.46 2 31400634 31409115
TU564247 False 445 lncRNA 0.46 3 31400634 31409115
TU564241 False 410 lncRNA 0.46 2 31400719 31409115
TU564242 False 410 lncRNA 0.46 2 31400719 31409115
TU564243 False 410 lncRNA 0.46 2 31400719 31409115
TU564244 False 1448 lncRNA 0.43 2 31400719 31403485
TU564245 False 410 lncRNA 0.46 2 31400719 31409115
TU564240 True 1145 lncRNA 0.44 2 31407921 31409115

Neighbor

gene id symbol gene type direction distance location
LOC110525734 LOC106584947 coding downstream 80472 31315214 ~ 31320162 (-)
LOC110525735 LOC106584987 coding downstream 85571 31310900 ~ 31315063 (-)
LOC110525732 LOC106584984 coding downstream 94236 31305607 ~ 31306398 (-)
LOC110525730 LOC106584981 coding downstream 304744 31058538 ~ 31095890 (-)
LOC110525727 LOC106584979 coding downstream 400231 30966155 ~ 31000403 (-)
LOC110525736 LOC106584988 coding upstream 19545 31428660 ~ 31445370 (-)
tmem119a LOC106584989 coding upstream 48927 31458042 ~ 31464600 (-)
LOC110525740 LOC106584990 coding upstream 56718 31465833 ~ 31539790 (-)
ssh1a LOC106584991 coding upstream 136028 31545143 ~ 31607759 (-)
LOC110525743 LOC106584993 coding upstream 207532 31616647 ~ 31631197 (-)
G496624 NA non-coding downstream 30147 31370010 ~ 31370487 (-)
G496623 NA non-coding downstream 33875 31366522 ~ 31366759 (-)
G496620 NA non-coding downstream 38379 31362027 ~ 31362255 (-)
G496609 NA non-coding downstream 39723 31346919 ~ 31360911 (-)
G496614 NA non-coding downstream 44644 31355197 ~ 31355990 (-)
G496650 NA non-coding upstream 14574 31423689 ~ 31423906 (-)
G496652 NA non-coding upstream 15806 31424921 ~ 31425166 (-)
G496771 NA non-coding upstream 250365 31659480 ~ 31659947 (-)
G496775 NA non-coding upstream 258918 31668033 ~ 31668357 (-)
G496776 NA non-coding upstream 260139 31669254 ~ 31669636 (-)
G495560 NA other downstream 825061 30575118 ~ 30575573 (-)
G495554 NA other downstream 851184 30545402 ~ 30549450 (-)
LOC110525714 LOC106585251 other downstream 873088 30526034 ~ 30527686 (-)
G494542 NA other downstream 1725061 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 1897243 29502192 ~ 29520980 (-)
G496772 NA other upstream 252278 31661393 ~ 31661618 (-)
G496777 NA other upstream 261863 31670978 ~ 31671927 (-)
G496851 NA other upstream 434348 31843463 ~ 31892649 (-)
LOC110525784 LOC106585031 other upstream 1270927 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1918392 33327507 ~ 33330504 (-)

Expression


Co-expression Network