gpr27 (LOC106582853)


Basic Information

Item Value
gene id gpr27
gene name LOC106582853
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45969430 ~ 45972012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983346.1
AGCATGCCTGAGGAATGCATGAGACAGGATCCAATTATTGAATGAGTCCATGTATCGCAGAATAGTGTACACGCACAGGACAAACGTTTCCGTTTCTGATCTGAGGACGTGGATTACATCTCATCTATCTCGAGATTAGCCCCTGGCTGTTCAGTATTGTCAGTCTCTACCTCATCCGATTCAACCTCGTTTGGCAACGTAAATAGTAGACATATTTTCCACAAATACAAACCAACGCGCATAGTTTATATACAACTGTTCTTTAATTCTGGATCTATCCATGAACCATGCCTTCGATTGAGCGGACTGAACAGTGGTTTGGCTATAGCCTACCATGCCCTATTAATTGCGTGCTGAAGTGATGATGACGGCCTGTCCCCAGTTTTATGTTTATTTCTTCCGCAAGACGAACGAGAACCTCTGCCATCAGTGGAAATGGAGATATTTTTTTGAAATGTGTGCCCATTAAACGGATCCTTTTAAAATGGTGTGTGCGAACACTGCTATCAGCAGAAAATGGAACTACGAACATGGGTGTATTTCATATTCGAAACGGACACTTGTGAGATGAAGGATTACAAGAAAAGCAATGTAAAACGGTGACTTCATTTTTCGATGGATATCAATTGCTTTTGTTAATCAGGCTATGCTTTAAACTCAGGAGAATAATTAATTATATTCTGAATAGGTTAAAACGCAGATTCTGTTTAACCTGAAGTATTTTTGACTTAAAACGTGCATCATGTACATTTTTTTGCAGGGCAATTTTGATCAATCATTGATACTTCGACGAGAGGAAGCAGGACAACTTGATGTGCGAATATAGAATCAACGCGGCTTTGACAATAGCCTGGTTGCATAGATGGCAAATACAAGCGAGTTTGGGGAAAGCAATCCTTCACTACAGAATTATGCTATCACCGCCTCTGCGGTGAAACTGGCCTCGCTCGGTCTGATCATTTGCATGAGCCTTGTAGGGAATGTGGCGCTGTCCCTGTTGGTGCTGAAAGACAGCTCCCTTCAAAAGGCTCCGTATTATTTTCTACTTGATCTGTGCTTGGCAGATATAATACGGTCTACCGTGTGTTTCCCCTTTGTGATGATATCAATCAATAACGGTTCCACCTGGACATACAGCATTATAAGTTGTAAGATTATTGCTTTCATGTCAGTCCTTTTTTGTTTCCATGTAGCGTTTCTGCTCTTCTGCGTCAGTGTCACCAGATACATGGCAATAGCACACCACAGGTTTTATTCCAAACGAATGACATTATGGACATGTGTGGCAGTGATTTGCATGGTCTGGACCCTCTCTGTCGCTATGGCTTTCCCCCCTGTATTCGACGTTGGCACCTACAAATTCATCCATGAGGAGGAACAATGCATTTTCGAGCACCGATACGTGAAAGCAAACGATACCCTGGGCTTCATGTTGATGCTGGCTGTCATCGTGGGAACAACACACGTTGTTTACATAAAGATGCTGTGTTTCGTTTATGACCACCGCAAGATGAAACCCGCTCAGCTGGTCCCAGCTATAAGCCAAAACTGGACCTTCCACGGGCCAGGTGCAACTGGGCAGGCAGCTGCCAATTGGATTGCAGGATTTGGACGTGGTCCCACCCCACCAACATTAGTGGGCATCAGGCAAGCCTCGCATAATGGAAACAGACGGCTGCTTGTCTTGGATGAATTTAAAATGGAGAAACGCATAGGGAAAATGTATTACATGATAACTCTGGCGTTTCTTCTCTTCTGGGCCCCGTACATTGTTGCTTGCTACCTTCGAGTTTTTGTCAAGGGAGGCACCATTCCACAGGTCTACCTGACTGCGGCGGTGTGGATGACGTTCATTCAGGCGGGGGCGAATCCCATTATTTGTTTCATATTCAACAAGGAGCTGAGGATCCGTCTCAGAGCTTGTTTCCCGTGTTGTCTCAGCACACAGACGCCTATGTCTATGGAGCCTTACTGTGTCATCTGATAGGTTCAACTGTTGTTTTAGACAAGGGAAAACGAACAGAACTGTCATGTTGGTATTAAAGCCTATAGGTGATATTTCTCAGTCTCTCTGCTTGCCCAATTTTTCCACATATGTTGAAGGCCACATTTTGTGATTTGCACATACAGAAAGTGTATAAAGTTGCCAATCTTGATTTCAAATACTAATCATTTAGCATATTTTATGAATCTCATTAGTATTTTCTTTGAGTATAGCCTAGGCCTATGTCAACCCTGTGAGAAAGACATATGACGTGTGTATATTCTGTGAAGCTATTTTGTCGCTTTATTCTGAACAAACCAAAAAAAAATGACTTTGTATCTTTCAGAAAATCTTAGAATTATTTGTGTGGAGAAAGTGTTAACTCACTTTTACAGTAATTTGCAAATACATGTTCTTCCTGGATGTTGACATAACCTGGTGATACAAATGCATCCCTTGTACATTCCCTGTAAAATAGacaaatcatttgtttttctatgGACAATGACCATGGGACTCTAAAAGAAGAAAAGTGTCAGTGGTGCAGAGAGGTGTTTGCATTGTTTGGACGTCTGAGTAAATAAACAACAAATGAATGA

Function

NR:

description
probable G-protein coupled receptor 173

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983346.1 True 2583 mRNA 0.42 1 45969430 45972012

Neighbor

gene id symbol gene type direction distance location
LOC110527871 LOC106582850 coding downstream 218593 45734357 ~ 45750837 (-)
ppp4r2b LOC106582851 coding downstream 237916 45725312 ~ 45731514 (-)
chl1b LOC100380675 coding downstream 656453 45236873 ~ 45312977 (-)
LOC110527866 LOC106582846 coding downstream 798024 45085520 ~ 45171406 (-)
cntn4 LOC106582845 coding downstream 987779 44803009 ~ 44981651 (-)
LOC110528957 LOC106565741 coding upstream 345517 46317529 ~ 46333627 (-)
LOC110527878 LOC106582858 coding upstream 369976 46341988 ~ 46374962 (-)
praf3 praf3 coding upstream 485003 46457015 ~ 46460324 (-)
LOC110527887 LOC106582866 coding upstream 1073306 47045318 ~ 47141560 (-)
LOC110528959 LOC106582867 coding upstream 1172893 47144905 ~ 47146014 (-)
G613410 NA non-coding downstream 69298 45872370 ~ 45900132 (-)
G613307 NA non-coding downstream 263626 45705586 ~ 45705804 (-)
G612915 NA non-coding downstream 459004 45510157 ~ 45510426 (-)
G612891 NA non-coding downstream 480244 45485492 ~ 45489186 (-)
G612743 NA non-coding downstream 572933 45396039 ~ 45396497 (-)
G613820 NA non-coding upstream 153848 46125860 ~ 46129320 (-)
G613821 NA non-coding upstream 158347 46130359 ~ 46139862 (-)
G613880 LOC106582854 non-coding upstream 225830 46197842 ~ 46198275 (-)
G613881 NA non-coding upstream 233009 46205021 ~ 46209544 (-)
G613911 NA non-coding upstream 277901 46249913 ~ 46250150 (-)
G613411 LOC106582852 other downstream 93730 45874965 ~ 45875700 (-)
G611674 NA other downstream 1483678 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 2389466 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 2432465 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 2530517 43435578 ~ 43439076 (-)
LOC110527888 LOC106582868 other upstream 1296311 47260325 ~ 47284791 (-)
G616880 NA other upstream 2515035 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 3212412 49184424 ~ 49186096 (-)
G617632 NA other upstream 3223592 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 3323243 49295040 ~ 49297305 (-)

Expression


Co-expression Network