praf3 (praf3)


Basic Information

Item Value
gene id praf3
gene name praf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46457015 ~ 46460324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165143.1
GTAGCCAGACATACGTTCTGCAGCCTACAACAAGCGTATTCATTATATTTCATAGTCTTCAAACAGTAGCAAAATGGCTAAGGTAGAACTCACACCGCTGAGACCCTGGGACGATTTCTTCCCAGGTTCTGACCGATTTGCTAAACCAGACGTGAGAGATCTACCTAAATGGAACAACAGGGTTGTCAACAACTTGCTTTACTATCAGACGAACTATTTGGCGATGGCTGTCATGGTTTTCCTTATTGTGGGGTTCCTGAACCCTATGGAGATGTTCATGGGCATGGCGGTGGTGTCCTTGGTCTTCCTGGGCTCAGTGTGGGCTGGAGAGAATAAGGCCATGATCAAGGACTTTAAGAGGCAGAACCCCACATTGTTTGTCATGGCAGTGATGCTTGCCAGCTACTTCCTCATGTCTCTCTTCGATGGCGTCATGGTCTTCATATTTGGGATCACGTTTCCTCTTCTCTTGATCTTTGCACATGCCTCATTTCGCCTTCGCAACATGAAGAATAAACTGGAGAATAAAATGGAGGGGGCGGGGCTAAAGAAGTCACCAATAGGTATTCTACTGGATGCACTGGGCCAGCAGGAAGAGAGTCTGCAAAAGATCCAAGAATTCTTGGAAGGAAAACTAAAGGAAGGATGAGAACTCCACACAGACGCCACAGTCCCTGTGTTGTCGTAGGTCCCCTATCAGCCTCCCTGGCCTCTGACCGGATGGGAAAGGATTCCTTTCCACACCCCCTTTTAACGTGCAGTCTCATTGCATGCAGTCAATGTTGAATGGGAATGATTGTAATACATCTCAGCTTGTTTGAAGACTTCAGCTAGAAACCGTATTGCCTATTGCACATgcaagtgtatgtgtgtttagACTAGAGAACATGTGTTGAAAACACAAGCGTTAGTTTAACCTCAGGGTATTTGTTACTCCCACCCAAAATTTGTCAGagcacttcttttttttttttttaagtagtgATGTCTGCATCTCAATAGTTGACATGTGAGTCTTCCCCGTTAAATGGATTTGTGTGTGTAGTTGGGCAAGTGTTTCCAAATCCTGTATGCAATATTTATACAACTTATTTATATTTTGTGACTTTTGTAAATATAAGGAGTGAAAGTATTGTGGCGTTAAAAGCAAAACTGTGACCGGACTGATTGAGGTCACTTGGTTTGAAAAATAAACAGAACTAGGTTTATTGTTCCATAGATGAATTCACAATTTATCTCGCAAATTAAGCAGTAGGGAATTAGCTTTTTAAAGTGCTGTGCATTCTCCCTTTTATTGATGCAAACATTGCAATGTGAAAATGCTGATTTGTGGAGAGTAGACCTTTACTTTGCTACTAAGCTGTACTACCTTTCTTATTGCTCTCTTTCCTCAGAAGATCTGGAGGTATTTAATCTGTTTAATTATTTTCAATTAAGAGAAACAACTGACCGGCTTGGCTATGAAGGAGAAATTGTGAAATCACTGTAAATTATTAGTTGTGAATTTTTGTTTTCAACAAGtgttaaataaatacagtaccagtc

Function

symbol description
praf3 PRA1 family protein 3

NR:

description
PRA1 family protein 3

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165143.1 True 1545 mRNA 0.41 3 46457015 46460324

Neighbor

gene id symbol gene type direction distance location
LOC110527878 LOC106582858 coding downstream 82053 46341988 ~ 46374962 (-)
LOC110528957 LOC106565741 coding downstream 123388 46317529 ~ 46333627 (-)
gpr27 LOC106582853 coding downstream 485003 45969430 ~ 45972012 (-)
LOC110527871 LOC106582850 coding downstream 706178 45734357 ~ 45750837 (-)
ppp4r2b LOC106582851 coding downstream 725501 45725312 ~ 45731514 (-)
LOC110527887 LOC106582866 coding upstream 584994 47045318 ~ 47141560 (-)
LOC110528959 LOC106582867 coding upstream 684581 47144905 ~ 47146014 (-)
LOC110527888 LOC106582868 coding upstream 800001 47260325 ~ 47284791 (-)
LOC110527117 LOC106565757 coding upstream 829166 47289490 ~ 47294719 (-)
LOC110527890 LOC106582870 coding upstream 842366 47302690 ~ 47337079 (-)
G614169 NA non-coding downstream 3072 46453714 ~ 46453943 (-)
G614165 NA non-coding downstream 5169 46450442 ~ 46451846 (-)
G614162 NA non-coding downstream 15576 46441168 ~ 46441439 (-)
G614160 NA non-coding downstream 17261 46439523 ~ 46439754 (-)
G614156 NA non-coding downstream 26519 46430267 ~ 46430496 (-)
G614182 NA non-coding upstream 6619 46466943 ~ 46468878 (-)
G614184 NA non-coding upstream 11299 46471623 ~ 46472288 (-)
G614185 NA non-coding upstream 12641 46472965 ~ 46473809 (-)
G614436 NA non-coding upstream 82627 46542951 ~ 46543226 (-)
G614456 NA non-coding upstream 105540 46565864 ~ 46566067 (-)
G613411 LOC106582852 other downstream 581315 45874965 ~ 45875700 (-)
G611674 NA other downstream 1971263 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 2877051 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 2920050 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 3018102 43435578 ~ 43439076 (-)
G616880 NA other upstream 2026723 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 2724100 49184424 ~ 49186096 (-)
G617632 NA other upstream 2735280 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 2834931 49295040 ~ 49297305 (-)

Expression


Co-expression Network