LOC110527888 (LOC106582868)


Basic Information

Item Value
gene id LOC110527888
gene name LOC106582868
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47260325 ~ 47284791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609478.2
ATGGTCCACTGGGCCACACAGTGGTTGACATGTGTCTGGCTCCAGACTGTCTTGACCTCCACATTGGACACCTGCCCCTCCACAACCCCTAGCCCTGTCAACTTCTCTGTGGTCTACACCATGCCCTTCTTCCAAACAAAGAGCCCCATCCAAAACATAGTGACCAACTCAATGTACCAGGAAGTGTATGTGGCATCTCAGAATGTGATCGAGGCTGTGAACATGAGTTTGGAGAAGGTGTGGGAGCTTCCTACAGGCCCAGTGGGCGGCCCTGAGTGTAAGATTTGTGATTTGTGTGACGTTGACAAGGATCCCAACTTCCTAGAGAACACTGACAATGAGGTATTATTGTTGGATACATTCTTTATGTATTTATACTCTTGTGGGAGTTCTCAATATGGTGTATGCCATTTCCACCAACTTAAGACAGATGGACAACCACCCAATAAGAATTCATCTAAATGTTTATTCAGAAAAGAATCTAACTCTGCTGCCTATTGTCCTGACTGCCTTGCCAGCCCGCTGGGCACCAAAGTCACCATGGTGGAGGAGGGACAGACTGTATACTTTTTTGTGGCTTCCACTGTAAATGATAGCATGACACAGAGATATGACAGGAAGTCCATATCAGTGCGCCGACCATTGGCATCAGAAGACGGTTTTTACAATGACGTGCGGGGACTGACCGTTCTGCCTAGCCTGCGCAGGACCTACAACATTGAGTATGTCTACAGCTTCTTCACCCAGGAGTTTGTCTACTTCCTGTCCGTCCAGAGAGAGAGCCCTGACCAAGAGTTCTCCCCGTTTCAGACACGGCTGGGCCGCCTGCCGAGGAATGAGTGGGAGATGAGGAGGTACCGGGAGGTGGTTCTGGAGTGCCGGTTTGAACCCAAACGGAGGAGAAGAAACACGGTAAGCGGGAGTGAGGCCTTTAAGGATGTGGTGTACAACATGGTGCAGGCCGCCCACTTTGGGAAGGCAGGCAGTGAGCTGGCGGATGAACTTGGAGCAGAGGAAGAGGATGACATCCTGTATGGAGTGTTCGCCGTCACAGATGACAATAGGGTCACAGAGCACGACTCAGCCCTCTGTGCCTTTCCAATGGACAATGTGAACAAGGCCATTGATGATGGGGTGGATGACTGCTGTAAGTCTGGCCCAGAGCAGCTGTCCCGGGGACTTTGCCACTTCCAGGCCTGCGAGAGCTGTCCTCATGAGAGCATGGAGAACAACGCCACCTGCAGGGACCACCCCACCATGGTGTCTAAGCCCTATTACAGAGTGGACCTCTTCAACAGGCAGATGAATGACATCCTGCTCACCTCCCTGCTTGTCACCACCATAGAGAACAAGACCGTGGCACACATTGGCACCTCCACTGGACGGCTCCTCCAGCTTGTTTTGAGAAGATCAAGCCCTATTATCTTTGCCAATTACACCTTGGTAGAGAACCAGAGGGTCTCCCCAATTGCTGCTGTGTACTCGTCAGAATCTCTACTGTTTGTGGTTGGAGACAAGGTGATCCAGGTGCCTCAGAGAGGGCCAGGCTGCCAGCACTTCATGACCTGTGCCATGTGCCTGACAGCCCCTGAGTTTATGGTCTGTGGCTGGTGCTCTGGAGAGTGTTCCTGGGAGGAGGAGTGCAGTGGCCACTGGAGGAACGAGTCTTGCCCCCCTGGTATTACCGAGTTCTTTCCTAAGACAGCTCCCCCTGATGGTCAATCAGAGCTGACTCTGTGTGGCTGGGAGTTTCAGTCTCCCCTGAGGCCTGCCATCAGCTCCAGAACCCACCtggtgagactgggacagacagCCTGCGCCGTGCTGCCACTGAAGAGCAACAACACACACCTGGTGTGTAAGATCCACTCTGGGCCCATTGAGCTGTCCAAATCAGTTAACATCACTGTGGAGGTGCATGAGGAGAAGATAGAGGGCCGCTACTCCATCGATGGAAAATCAGAAATGCCAGGATTTACCTTTGTGATTCCCAACATCACAGACATCCAGCCCAACTACGGGCCTCGTGTTGGGGGAACTCTGATTACTGTGACTGGGCCTCACCTGGACGCTGGGAAGAACAGGAGGGTCACTCTGAATGGAGATCCCTGCCCAATCACCAGTGTCACAGCGCCCAGAGGGAACATGTCCTCCATCatctgtctgtctcagcccatCGCGGAGGTGAGGGACGTCCCCCTCACTGTGTTCATAGACAAGTCACCTGTCCTCACCACCAAAGTCTTCTACTACAAAGAAAACCCAGAGGTCACAGCTGTCCTCCCAGACTGCAGTTTCGACAGGGGGTCAAAGATAATCATTGAAGGGAAGAACTTGGACTCTGTTTACAGGACCATCATTCGCTTTAAGCCCAACGAGGGACACCTGAAGCCTGTCATCAGAGTGTGCAAAGGCAAGTCTTTGCCTACACGGATGGAGTGCATAACTCCTGCTCTCCTCCGGGAAGAAACAGAGGAAGGGGAGCTCTCCTTTGATATGGATGGAGCTGTTGGACTGTGGAATGGAGAGTTCTCCTACCACCCCTATGGCGAGCCCATACCCTTTGAAACTGAGGGCCATGTACTTAGGCTGTACCATGGGCAAGATGAAGTGTCACTGCATCACCAGAAACTGAACCTTGTGAGTTCCTGCATGACAATCACTATGACAGTGGGAGGAGTGGATTGTGACGCGAAAGTCCTGGACAATGAAATCACCTGCAGGATCCCCAGAAACGTAACCATAAGTGAAGGACTGCCTGTGAAGATCTCCATCAATGGGCAGGTTCACAACGTTGGGGCTGTGGTCCTGGTCAGTAATCACTACATGGTGGGCATCGTACTGGGGATACTGGGGGCCCTGGTGGCGGGGGCTGTGCTGGCCTTCGTAGTCATGAAGCACCTGAGGAAGCAGAAGAAAGACTCTCAGGTGGAGACCCGTTTGGCCCAAAACCACAACCGCTCCAACAGCAGTAGTCTGGAACTGTCATCTGTAACTGACTACAGAAGAGTAGTCCTGCCTCAGAGGCCAAGTTCGGCTCTGGGAAGCCCAGTGGTGTTCCCCAGTCTGGCCTACCCTGCAGGCAGAATGGACCCCACACTCACCCCCCTCCTACCCCCTGAGAAGATCTCCATCTCCAGCTTCAGACCAGAGCTCCTGGAAGAGGTGAAGGATGTGCTGATCCCAGCAGACATGCTCATTGTCCAGCATTGCCAGATCATTGGCAAGGGTCACTTTGGCACAGTTTATCATGGCTACTTCACAGACCACAACAACAGAGAAATCCATTGTGCTGTCAAGTCATTGAACAGGATCACAGATGTAGAGGAGGTAGAGCAGTTTCTGAAGGAGGGCATCCTGATGAAGGGGTTCCATCACACCAACGTTCTCTCTCTGCTGGGCATCCTGTTGCCTCAGGAAGGGCTACCCCTGGTGGTACTACCTTATATGAAACACGGGGACCTCCGCCACTTCATACGCTGTGAGAAAAGGAACCCCACAGTGAAGGACCTGATTGGCTTTGGGCTTCAGGTTGCCAAGGGGATGGAGTACTTAGCACACATGAAGTTTTTGCACAGGGACCTTGCAGCACGCAACTGCATGCTGGATGAGTCGTACACCGTGAAGGTGGCAGACTTCGGCATGGCCAGGGATGTGTTTGATAAGGAGTACTACAGCATTCAGGACCACAGGAAGGCTAAGTTACCAGTCAAGTGGATGGCCATCGAGAGCCTCCAGACACAGAAATTCACTGCCAAGTCAGATGTATGGTCATTTGGGGTGTTGATGTGGGAGATGTTAACGAGAGGAGCAAGCCCCTACCCAGAGGTGGACCCCTAtgacatcacacattatctactgaAGGGCAGGAGACTCCCCCAACCACAGTTCTGTCCTGACCCTTTGTATGCCATCATGCTGCAGTGTTGGGACCCAGACCCAGAAGTGAGGCCCAGCTTTGCCACGCTGGTGTCTGCTGTCCTGACCATCCTGTCTGGCCTGGAGGGGGAGCACTACATCAACCTCAAGGTCACCTATGTCAACCTGGACCAGCCACGCCCCTATCCCGCCCTCACTGAGTCCGCAGACGAGTGTGATTCCTCAGACACTGAAGACACACGCTCAGTGTCCTGATGTCACACCAGGACAGGTACATGTAGTATGGTTTGGTGCTATGAGCACAAGGACCTCAAAAAGTCTAACTAAAGATTGTTGATTATCTTTTACTACATAGTGTCGATAGGAAGCAGTTGCAATGCACAAAGTCTAAGGGACTTGAAAGTTCTTCCCCCATTCACATTATAGTATACTACCTGGCAAAGTTTTTTGTATTATAAGAGTGGATGTAATGTCCATATGTTTTCTCTTAATTGTTTTTGAGATAAAGTAATTATACTGTATCATTTGGATCATACTTTTACAAAACAAAATGGACCCTAACGTTTTAACAGTGACCTGttattgttacttttatttaatgTGTGACCTTCCTGGTCCCGTCC
>XM_036983370.1
TGAATGCGTGCGCTCAGTTGAGGAGTACAGCAAACCGTCTGGTGCACTGCAGTCTATGATTCACCTTTCGCCTGGAAATAAAAACTGTTTTCATTGTTTGAAAATAGCGTAGGCTACGCATACAGCACATTCTCCATGAAAATAAATATTGGTGAAGGGAAAACTTTTCGAAGTCCGCGCGTGGTCAAGGAATTGTCAGTTATGCTGTCAAGAGGACAACTCTGAGATTCGTGACGTTCGTGCATTACCTCAAACAGAGATCTGCAGCTGGTCTCAATAAGGATGACATTGTCCAACAATCAGACCTGGAGGTAACGCAAggacgtccccccccccccccttctctctgcatCTGAGAGTGGAGATGGTCCACTGGGCCACACAGTGGTTGACATGTGTCTGGCTCCAGACTGTCTTGACCTCCACATTGGACACCTGCCCCTCCACAACCCCTAGCCCTGTCAACTTCTCTGTGGTCTACACCATGCCCTTCTTCCAAACAAAGAGCCCCATCCAAAACATAGTGACCAACTCAATGTACCAGGAAGTGTATGTGGCATCTCAGAATGTGATCGAGGCTGTGAACATGAGTTTGGAGAAGGTGTGGGAGCTTCCTACAGGCCCAGTGGGCGGCCCTGAGTGTAAGATTTGTGATTTGTGTGACGTTGACAAGGATCCCAACTTCCTAGAGAACACTGACAATGAGGTATTATTGTTGGATACATTCTTTATGTATTTATACTCTTGTGGGAGTTCTCAATATGGTGTATGCCATTTCCACCAACTTAAGACAGATGGACAACCACCCAATAAGAATTCATCTAAATGTTTATTCAGAAAAGAATCTAACTCTGCTGCCTATTGTCCTGACTGCCTTGCCAGCCCGCTGGGCACCAAAGTCACCATGGTGGAGGAGGGACAGACTGTATACTTTTTTGTGGCTTCCACTGTAAATGATAGCATGACACAGAGATATGACAGGAAGTCCATATCAGTGCGCCGACCATTGGCATCAGAAGACGGTTTTTACAATGACGTGCGGGGACTGACCGTTCTGCCTAGCCTGCGCAGGACCTACAACATTGAGTATGTCTACAGCTTCTTCACCCAGGAGTTTGTCTACTTCCTGTCCGTCCAGAGAGAGAGCCCTGACCAAGAGTTCTCCCCGTTTCAGACACGGCTGGGCCGCCTGCCGAGGAATGAGTGGGAGATGAGGAGGTACCGGGAGGTGGTTCTGGAGTGCCGGTTTGAACCCAAACGGAGGAGAAGAAACACGGTAAGCGGGAGTGAGGCCTTTAAGGATGTGGTGTACAACATGGTGCAGGCCGCCCACTTTGGGAAGGCAGGCAGTGAGCTGGCGGATGAACTTGGAGCAGAGGAAGAGGATGACATCCTGTATGGAGTGTTCGCCGTCACAGATGACAATAGGGTCACAGAGCACGACTCAGCCCTCTGTGCCTTTCCAATGGACAATGTGAACAAGGCCATTGATGATGGGGTGGATGACTGCTGTAAGTCTGGCCCAGAGCAGCTGTCCCGGGGACTTTGCCACTTCCAGGCCTGCGAGAGCTGTCCTCATGAGAGCATGGAGAACAACGCCACCTGCAGGGACCACCCCACCATGGTGTCTAAGCCCTATTACAGAGTGGACCTCTTCAACAGGCAGATGAATGACATCCTGCTCACCTCCCTGCTTGTCACCACCATAGAGAACAAGACCGTGGCACACATTGGCACCTCCACTGGACGGCTCCTCCAGCTTGTTTTGAGAAGATCAAGCCCTATTATCTTTGCCAATTACACCTTGGTAGAGAACCAGAGGGTCTCCCCAATTGCTGCTGTGTACTCGTCAGAATCTCTACTGTTTGTGGTTGGAGACAAGGTGATCCAGGTGCCTCAGAGAGGGCCAGGCTGCCAGCACTTCATGACCTGTGCCATGTGCCTGACAGCCCCTGAGTTTATGGTCTGTGGCTGGTGCTCTGGAGAGTGTTCCTGGGAGGAGGAGTGCAGTGGCCACTGGAGGAACGAGTCTTGCCCCCCTGGTATTACCGAGTTCTTTCCTAAGACAGCTCCCCCTGATGGTCAATCAGAGCTGACTCTGTGTGGCTGGGAGTTTCAGTCTCCCCTGAGGCCTGCCATCAGCTCCAGAACCCACCtggtgagactgggacagacagCCTGCGCCGTGCTGCCACTGAAGAGCAACAACACACACCTGGTGTGTAAGATCCACTCTGGGCCCATTGAGCTGTCCAAATCAGTTAACATCACTGTGGAGGTGCATGAGGAGAAGATAGAGGGCCGCTACTCCATCGATGGAAAATCAGAAATGCCAGGATTTACCTTTGTGATTCCCAACATCACAGACATCCAGCCCAACTACGGGCCTCGTGTTGGGGGAACTCTGATTACTGTGACTGGGCCTCACCTGGACGCTGGGAAGAACAGGAGGGTCACTCTGAATGGAGATCCCTGCCCAATCACCAGTGTCACAGCGCCCAGAGGGAACATGTCCTCCATCatctgtctgtctcagcccatCGCGGAGGTGAGGGACGTCCCCCTCACTGTGTTCATAGACAAGTCACCTGTCCTCACCACCAAAGTCTTCTACTACAAAGAAAACCCAGAGGTCACAGCTGTCCTCCCAGACTGCAGTTTCGACAGGGGGTCAAAGATAATCATTGAAGGGAAGAACTTGGACTCTGTTTACAGGACCATCATTCGCTTTAAGCCCAACGAGGGACACCTGAAGCCTGTCATCAGAGTGTGCAAAGGCAAGTCTTTGCCTACACGGATGGAGTGCATAACTCCTGCTCTCCTCCGGGAAGAAACAGAGGAAGGGGAGCTCTCCTTTGATATGGATGGAGCTGTTGGACTGTGGAATGGAGAGTTCTCCTACCACCCCTATGGCGAGCCCATACCCTTTGAAACTGAGGGCCATGTACTTAGGCTGTACCATGGGCAAGATGAAGTGTCACTGCATCACCAGAAACTGAACCTTGTGAGTTCCTGCATGACAATCACTATGACAGTGGGAGGAGTGGATTGTGACGCGAAAGTCCTGGACAATGAAATCACCTGCAGGATCCCCAGAAACGTAACCATAAGTGAAGGACTGCCTGTGAAGATCTCCATCAATGGGCAGGTTCACAACGTTGGGGCTGTGGTCCTGGTCAGTAATCACTACATGGTGGGCATCGTACTGGGGATACTGGGGGCCCTGGTGGCGGGGGCTGTGCTGGCCTTCGTAGTCATGAAGCACCTGAGGAAGCAGAAGAAAGACTCTCAGGTGGAGACCCGTTTGGCCCAAAACCACAACCGCTCCAACAGCAGTAGTCTGGAACTGTCATCTGTAACTGACTACAGAAGAGTAGTCCTGCCTCAGAGGCCAAGTTCGGCTCTGGGAAGCCCAGTGGTGTTCCCCAGTCTGGCCTACCCTGCAGGCAGAATGGACCCCACACTCACCCCCCTCCTACCCCCTGAGAAGATCTCCATCTCCAGCTTCAGACCAGAGCTCCTGGAAGAGGTGAAGGATGTGCTGATCCCAGCAGACATGCTCATTGTCCAGCATTGCCAGATCATTGGCAAGGGTCACTTTGGCACAGTTTATCATGGCTACTTCACAGACCACAACAACAGAGAAATCCATTGTGCTGTCAAGTCATTGAACAGGATCACAGATGTAGAGGAGGTAGAGCAGTTTCTGAAGGAGGGCATCCTGATGAAGGGGTTCCATCACACCAACGTTCTCTCTCTGCTGGGCATCCTGTTGCCTCAGGAAGGGCTACCCCTGGTGGTACTACCTTATATGAAACACGGGGACCTCCGCCACTTCATACGCTGTGAGAAAAGGAACCCCACAGTGAAGGACCTGATTGGCTTTGGGCTTCAGGTTGCCAAGGGGATGGAGTACTTAGCACACATGAAGTTTTTGCACAGGGACCTTGCAGCACGCAACTGCATGCTGGATGAGTCGTACACCGTGAAGGTGGCAGACTTCGGCATGGCCAGGGATGTGTTTGATAAGGAGTACTACAGCATTCAGGACCACAGGAAGGCTAAGTTACCAGTCAAGTGGATGGCCATCGAGAGCCTCCAGACACAGAAATTCACTGCCAAGTCAGATGTATGGTCATTTGGGGTGTTGATGTGGGAGATGTTAACGAGAGGAGCAAGCCCCTACCCAGAGGTGGACCCCTAtgacatcacacattatctactgaAGGGCAGGAGACTCCCCCAACCACAGTTCTGTCCTGACCCTTTGTATGCCATCATGCTGCAGTGTTGGGACCCAGACCCAGAAGTGAGGCCCAGCTTTGCCACGCTGGTGTCTGCTGTCCTGACCATCCTGTCTGGCCTGGAGGGGGAGCACTACATCAACCTCAAGGTCACCTATGTCAACCTGGACCAGCCACGCCCCTATCCCGCCCTCACTGAGTCCGCAGACGAGTGTGATTCCTCAGACACTGAAGACACACGCTCAGTGTCCTGA
>TU700211
GTGAGTTTGGAAGTATCCTCTGTTGTACATACAAAGTCACCATCACTCTTTCAGGGGTACTTTATGAATGGCTTTAGGATTAAATTGGTGACATTTTGCTCCCTTTGGCAGATTCCCAACATCACAGACATCCAGCCCAACTACGGGCCTCGTGTTGGGGGAACTCTGATTACTGTGACTGGGCCTCACCTGGACGCTGGGAAGAACAGGAGGGTCACTCTGAATGGAGATCCCTGCCCAATCACCAGTGTCACAGCGCCCAGAGGGAACATGTCCTCCATCatctgtctgtctcagcccatCGCGGAGGTGAGGGACGTCCCCCTCACTGTGTTCATAGACAAGTCACCTGTCCTCACCACCAAAGTCTTCTACTACAAAGAAAACCCAGAGGTCACAGCTGTCCTCCCAGACTGCAGTTTCGACAGGGGGTCAAAGATAATCATTGAAGGGAAGAACTTGGACTCTGTTTACAGGACCATCATTCGCTTTAAGCCCAACGAGGGACACCTGAAGCCTGTCATCAGAGTACGGGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609478.2 False 4502 mRNA 0.51 20 47260325 47282372
XM_036983370.1 False 4498 mRNA 0.52 21 47260693 47284791
TU700211 True 537 TUCP 0.51 3 47268323 47270071

Neighbor

gene id symbol gene type direction distance location
LOC110528959 LOC106582867 coding downstream 114311 47144905 ~ 47146014 (-)
LOC110527887 LOC106582866 coding downstream 118765 47045318 ~ 47141560 (-)
praf3 praf3 coding downstream 800001 46457015 ~ 46460324 (-)
LOC110527878 LOC106582858 coding downstream 885363 46341988 ~ 46374962 (-)
LOC110528957 LOC106565741 coding downstream 926698 46317529 ~ 46333627 (-)
LOC110527117 LOC106565757 coding upstream 4699 47289490 ~ 47294719 (-)
LOC110527890 LOC106582870 coding upstream 17899 47302690 ~ 47337079 (-)
LOC110527893 LOC106582872 coding upstream 52444 47337235 ~ 47345317 (-)
LOC110527892 LOC106582871 coding upstream 60589 47345380 ~ 47357081 (-)
LOC110527894 LOC106582873 coding upstream 75080 47359871 ~ 47389443 (-)
G615256 NA non-coding downstream 29171 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 30858 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 33598 47225799 ~ 47226727 (-)
G615186 NA non-coding downstream 44881 47215166 ~ 47215444 (-)
G615178 NA non-coding downstream 48847 47210856 ~ 47211478 (-)
G616058 NA non-coding upstream 141061 47425852 ~ 47496066 (-)
G616112 NA non-coding upstream 256118 47540909 ~ 47541186 (-)
G616162 NA non-coding upstream 362752 47647543 ~ 47749086 (-)
G616328 NA non-coding upstream 724005 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 762125 48046916 ~ 48047153 (-)
G613411 LOC106582852 other downstream 1384625 45874965 ~ 45875700 (-)
G611674 NA other downstream 2774573 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3680361 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3723360 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 3821412 43435578 ~ 43439076 (-)
G616880 NA other upstream 1202256 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1899633 49184424 ~ 49186096 (-)
G617632 NA other upstream 1910813 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 2010464 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 2375244 49660022 ~ 49936575 (-)

Expression


Co-expression Network