LOC110527894 (LOC106582873)


Basic Information

Item Value
gene id LOC110527894
gene name LOC106582873
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47359871 ~ 47389443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609487.2
ACCGTATGAAAACAAAAACATGCTATTCTAGCTACAAGCCTATTTGCTTCTTTATCAAGGATTGAGCACGCTACTAATTTACATACAAGGTGTGGTGACCATGGTTTGTGAATTTAGCAAACAGTATAGGCTATAATGTAGGACGACACGGAGCGCGCCACGGATTGGAAATGTAGGCAAAACGCAGGATTTAGCATTAGACACCTGAAAAGAGTCACAGAGGCTCCCCCCACTGGCGGTGGCTGGGATCACTTTATTGTTTTTGACTAGTGGAAGACACATTCTTACTGGTTTAACAAAAATAGATGGCTAACCAAACTACTGGAGAACACATGCTTGAAGTTGCTAGGTGAGGTTTTGATTGGCTGAGGTTTGAGAAGCACGACCTCACAAATCAGACCACATGGAGGTCAAAGGGCGCCTCATCACATCCATGAGTGTGGGGGCTCCAGATCAGGACAGCAAGCTGCAAGCTGAACGCATCTCCGCACTGCAGGAGAGAAAGCAACTCCTGGAGGACCTCCTCAGCAGCCGAGTGGGAGAGCTGAGACAAGTGTGTCTGCTGGAGGCGGAGCTGACCGGGAAGGTCCCACATGTTTTCcccctggagacaggagagagagctcCCGTTGTACAGCGCAGGGCTGGCCTCCCACATAACAACACCAGGGGAGAGGATGAGACAGGTCAGCGAAGGCAGATGAAAACAATCTTCAGTGGTGCTCTGTACAGGCACTCAGAGTCAGACAGGAATGTCCCCAACAGCAGGAGGACCGTTCACCGGGGATGCCACACAGAGGACACGGTGATGTCAGAGAGCACTAGCTCCATGTCAGATTCAACATCCCATGACAACGAGGAGTCCTCTCCCAGTGTGGCAGCAGACCACCGCTCCATGTCCCAGCCCCGTCTGTCCCTGGGCAGCCCAGACCACCAGGTCTGTAGGAAACTGTCCCCAGTGGAGATATACTATGAAATGAGGACGCGCCGTAACTCTGTGACCAGCTCCATCAGCCCTAGTCATTCTCTACCAAGGAGTACATCTAATGTTGAAGGCAGAAGTGTTCCTGCTACCCCCCTCATCGCCCGGACTGCCCCAATCAGTGTTCATGTCAGaTCGGATGGCTCTGGTGGGATTGCACTAAAGCAGTGGTCTGGCAGCCTGGATGTACCTCATATGGTGCCCTTAACCCAGGAAGGCTCCTCCTCGGAGCGCAGAGGCTGCCCGTACAGCTCCCGTGCCCGGCGGAGCAACAGTTCTGAGGCCTTGCTTGACCGCTCCAGTCTCCCCGAGGACCCAGGCCCCAGGAACGGGATGCCCGCCAAAGGAGGGCCTTACAAAAGCTCTGAGACCCTCACTGATGGCAAGCTGAGGCACATCCACCTGGGCAGTCCTGAGAGACACTTGGACGGCTCTGTGGAGCAGGGCAACATGCGGCTGTCCATGGGTGGGAGAGGAGAAGCAGGGGGAGGGGGTTACAACGAGCTCCTAATGGATTACATCTGGGGGAAGCAACAGAGGATTCAAGTGCAACACCAGCTGTACCAATCAACAGGTAGAATCTGGCAGGACATTTCCTCCCCTCGATCGTCCACTGCTGCAGTGCCTCCTCAAGCCAACGGCTTCTCCCTATCCCAGGTGCATCTACCCAGTGCTGCCCCACCCTACAGCCCCATGGTGATCCGTGGCTCCCAGGCTGAGCCTCACAGAGTCAAAGTCACGCGGACCAAGTCCTGTGGACCCTTCATCCCTCTGCAGCATGACACCATCCTGCTCTCTGCCTATGAGTCTCCCCACCCTGCCCCAAGCTCCACTACCTCCTCCATTCCCAACCTGCACCCCTACCAGACTGAGCTGTCCGGCCCCTCATTCAATCACAGGCCTCCCCAGTTCTCTCGCCCAACCCCGGAGGACTCGACGAGGAGTCTACATAAAGCTCTGGCGCTGGAGGGTCTCAGAGACTGGTACCTGAGGAACGCCCTTGGCTACCCTACTACCACGTCAAAGGGGCATGATTCAGGGGTTTCCCGCCTCTCACACCCCCACCCTTTGGTGCACCAGGCTCAGTCTATACAAGGTGATCCACTCCATAGGTCCCAGATGTCTCAGTCAGCCAGCTTCCATGGCCACCCACTGCATGGAAGGTCAATGGAGTTCTCACTCTATCAAGAGCCCGTTCATCCTCAGATGCAAGACATGACTCCGAAGGAGCCCAGCGCTGACCCTGGCACGTTGGTCTAATGTAGCTGAATCATTTTTTAAACAcatacttgcacacacacacacacgtacacacacacacacacacacacacacacacacgcacacacgcacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatacacacacagagatccaGACAATGTAAAAGGAGCTGATATAAGGTGACCTCACAAgctaaaaaaaacacattacaacCCCAGCAGAAAAAGACTGTAAAGCCGTTCTGAATGCCCTGTTATTCTGTAGCTACcgtatactgtattgtattctatcGTTGGTCAGACCCAAGCCACATGTAACAAACATCCTCCTTGTTTAACCTAACAAATCTCCCAAGATATAATTTTTTTACAGAATATAGTATATGTATTCTAAATAACTATTTTGTATCTTATGAGGTATAAAGAATAGATATAGAACAGGTCATTTATTGCTCATTTAGTCTTGTGATTTACAAACATATGTAATGAACTCATATGATCTAAAAAGTATTTAGACACCAGTGAATGTGTAAATGTACATGTTTGTAAAGATGAATATATTACATCTGTCTTATCTTTTCATCTGTCCATCAAACATGCATTGGCTTGCTATTTCTCATTTTTGTTAAACGAATGGGGACTTACATTGCAATATCGTAGACTGAGGAACAGGAGCTGTGGCTCTGTGTTTAAAACAGAACCCTACCTTTTGTAAAAATGTTAGTGCTTTCTAATAATCTGCAATGCTAACGCTAATCCTTTCAAAGCTTGGTCTTCAATCAACAAATGAAAGTAATGCCTGTTTTTGCCAAATTGAGTTGTTTCATGCAATCTAATTTTTCTGCATTTTCCAGCTGCTGAAATATCGTAATAGTAAAGTTCAGAGGGCTTTTACTGGTCTAGGACAGTTGTTTAATGAACTTTCTAGTCATTTTTATTCATTCAGTTGCGTAGCATGTTTTCCTTCAGAGCACTTTATGAATGTCAAAAGCCTTAACCCCTCAAAAGCAAGTAGAACAGTGGGATGGGACATTTTCCCCAAGAGAGAACACTTGAAAACCAGAAAATGGTTGACAGGGTATCAAGTTTGAGCAAATAAGAAAATGTGTGGCCCAATTGGACATTCAAGATCAACAATAAACCACATATTTGGATCTGTATATATCATGATAATAAGAAAGATTTGACAATAAATTCCTTTTAAAAGGATCTAACAAGAACAGGGCTAGGGATGGCACTGCTGAATGATGGCATGAGCAGGCCTTATGTCAGAACTGTGCTAGTAGGAGATTCCATTTCCAATGTATCATGTTGTCATACGCTACTCCTAGTGTTGGCACAATGTTATCATAACGATACAAATATTTTAAGTCATTAATGCCACCACAATTCAAGAATGACCCTTTTATAAGCTTCCCATGATGTGCTATGTGaccaaaactatgtggacacctgctaatcgaacgtctcattccaaaatcatgggcattaatatggagttggtcccccctttgttgctacaacagcctccactcttctgggaagcccttc
>XM_021609488.2
ACCGTATGAAAACAAAAACATGCTATTCTAGCTACAAGCCTATTTGCTTCTTTATCAAGGATTGAGCACGCTACTAATTTACATACAAGGTGTGGTGACCATGGTTTGTGAATTTAGCAAACAGTATAGGCTATAATGTAGGACGACACGGAGCGCGCCACGGATTGGAAATGTAGGCAAAACGCAGGTGAGGTTTTGATTGGCTGAGGTTTGAGAAGCACGACCTCACAAATCAGACCACATGGAGGTCAAAGGGCGCCTCATCACATCCATGAGTGTGGGGGCTCCAGATCAGGACAGCAAGCTGCAAGCTGAACGCATCTCCGCACTGCAGGAGAGAAAGCAACTCCTGGAGGACCTCCTCAGCAGCCGAGTGGGAGAGCTGAGACAAGTGTGTCTGCTGGAGGCGGAGCTGACCGGGAAGGTCCCACATGTTTTCcccctggagacaggagagagagctcCCGTTGTACAGCGCAGGGCTGGCCTCCCACATAACAACACCAGGGGAGAGGATGAGACAGGTCAGCGAAGGCAGATGAAAACAATCTTCAGTGGTGCTCTGTACAGGCACTCAGAGTCAGACAGGAATGTCCCCAACAGCAGGAGGACCGTTCACCGGGGATGCCACACAGAGGACACGGTGATGTCAGAGAGCACTAGCTCCATGTCAGATTCAACATCCCATGACAACGAGGAGTCCTCTCCCAGTGTGGCAGCAGACCACCGCTCCATGTCCCAGCCCCGTCTGTCCCTGGGCAGCCCAGACCACCAGGTCTGTAGGAAACTGTCCCCAGTGGAGATATACTATGAAATGAGGACGCGCCGTAACTCTGTGACCAGCTCCATCAGCCCTAGTCATTCTCTACCAAGGAGTACATCTAATGTTGAAGGCAGAAGTGTTCCTGCTACCCCCCTCATCGCCCGGACTGCCCCAATCAGTGTTCATGTCAGaTCGGATGGCTCTGGTGGGATTGCACTAAAGCAGTGGTCTGGCAGCCTGGATGTACCTCATATGGTGCCCTTAACCCAGGAAGGCTCCTCCTCGGAGCGCAGAGGCTGCCCGTACAGCTCCCGTGCCCGGCGGAGCAACAGTTCTGAGGCCTTGCTTGACCGCTCCAGTCTCCCCGAGGACCCAGGCCCCAGGAACGGGATGCCCGCCAAAGGAGGGCCTTACAAAAGCTCTGAGACCCTCACTGATGGCAAGCTGAGGCACATCCACCTGGGCAGTCCTGAGAGACACTTGGACGGCTCTGTGGAGCAGGGCAACATGCGGCTGTCCATGGGTGGGAGAGGAGAAGCAGGGGGAGGGGGTTACAACGAGCTCCTAATGGATTACATCTGGGGGAAGCAACAGAGGATTCAAGTGCAACACCAGCTGTACCAATCAACAGGTAGAATCTGGCAGGACATTTCCTCCCCTCGATCGTCCACTGCTGCAGTGCCTCCTCAAGCCAACGGCTTCTCCCTATCCCAGGTGCATCTACCCAGTGCTGCCCCACCCTACAGCCCCATGGTGATCCGTGGCTCCCAGGCTGAGCCTCACAGAGTCAAAGTCACGCGGACCAAGTCCTGTGGACCCTTCATCCCTCTGCAGCATGACACCATCCTGCTCTCTGCCTATGAGTCTCCCCACCCTGCCCCAAGCTCCACTACCTCCTCCATTCCCAACCTGCACCCCTACCAGACTGAGCTGTCCGGCCCCTCATTCAATCACAGGCCTCCCCAGTTCTCTCGCCCAACCCCGGAGGACTCGACGAGGAGTCTACATAAAGCTCTGGCGCTGGAGGGTCTCAGAGACTGGTACCTGAGGAACGCCCTTGGCTACCCTACTACCACGTCAAAGGGGCATGATTCAGGGGTTTCCCGCCTCTCACACCCCCACCCTTTGGTGCACCAGGCTCAGTCTATACAAGGTGATCCACTCCATAGGTCCCAGATGTCTCAGTCAGCCAGCTTCCATGGCCACCCACTGCATGGAAGGTCAATGGAGTTCTCACTCTATCAAGAGCCCGTTCATCCTCAGATGCAAGACATGACTCCGAAGGAGCCCAGCGCTGACCCTGGCACGTTGGTCTAATGTAGCTGAATCATTTTTTAAACAcatacttgcacacacacacacacgtacacacacacacacacacacacacacacacacgcacacacgcacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatacacacacagagatccaGACAATGTAAAAGGAGCTGATATAAGGTGACCTCACAAgctaaaaaaaacacattacaacCCCAGCAGAAAAAGACTGTAAAGCCGTTCTGAATGCCCTGTTATTCTGTAGCTACcgtatactgtattgtattctatcGTTGGTCAGACCCAAGCCACATGTAACAAACATCCTCCTTGTTTAACCTAACAAATCTCCCAAGATATAATTTTTTTACAGAATATAGTATATGTATTCTAAATAACTATTTTGTATCTTATGAGGTATAAAGAATAGATATAGAACAGGTCATTTATTGCTCATTTAGTCTTGTGATTTACAAACATATGTAATGAACTCATATGATCTAAAAAGTATTTAGACACCAGTGAATGTGTAAATGTACATGTTTGTAAAGATGAATATATTACATCTGTCTTATCTTTTCATCTGTCCATCAAACATGCATTGGCTTGCTATTTCTCATTTTTGTTAAACGAATGGGGACTTACATTGCAATATCGTAGACTGAGGAACAGGAGCTGTGGCTCTGTGTTTAAAACAGAACCCTACCTTTTGTAAAAATGTTAGTGCTTTCTAATAATCTGCAATGCTAACGCTAATCCTTTCAAAGCTTGGTCTTCAATCAACAAATGAAAGTAATGCCTGTTTTTGCCAAATTGAGTTGTTTCATGCAATCTAATTTTTCTGCATTTTCCAGCTGCTGAAATATCGTAATAGTAAAGTTCAGAGGGCTTTTACTGGTCTAGGACAGTTGTTTAATGAACTTTCTAGTCATTTTTATTCATTCAGTTGCGTAGCATGTTTTCCTTCAGAGCACTTTATGAATGTCAAAAGCCTTAACCCCTCAAAAGCAAGTAGAACAGTGGGATGGGACATTTTCCCCAAGAGAGAACACTTGAAAACCAGAAAATGGTTGACAGGGTATCAAGTTTGAGCAAATAAGAAAATGTGTGGCCCAATTGGACATTCAAGATCAACAATAAACCACATATTTGGATCTGTATATATCATGATAATAAGAAAGATTTGACAATAAATTCCTTTTAAAAGGATCTAACAAGAACAGGGCTAGGGATGGCACTGCTGAATGATGGCATGAGCAGGCCTTATGTCAGAACTGTGCTAGTAGGAGATTCCATTTCCAATGTATCATGTTGTCATACGCTACTCCTAGTGTTGGCACAATGTTATCATAACGATACAAATATTTTAAGTCATTAATGCCACCACAATTCAAGAATGACCCTTTTATAAGCTTCCCATGATGTGCTATGTGaccaaaactatgtggacacctgctaatcgaacgtctcattccaaaatcatgggcattaatatggagttggtcccccctttgttgctacaacagcctccactcttctgggaagcccttc

Function

NR:

description
coiled-coil domain-containing protein 120-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609487.2 False 3829 mRNA 0.48 11 47359871 47389443
XM_021609488.2 True 3667 mRNA 0.48 10 47359871 47389443

Neighbor

gene id symbol gene type direction distance location
LOC110527892 LOC106582871 coding downstream 2790 47345380 ~ 47357081 (-)
LOC110527893 LOC106582872 coding downstream 14554 47337235 ~ 47345317 (-)
LOC110527890 LOC106582870 coding downstream 22792 47302690 ~ 47337079 (-)
LOC110527117 LOC106565757 coding downstream 65152 47289490 ~ 47294719 (-)
LOC110527888 LOC106582868 coding downstream 75080 47260325 ~ 47284791 (-)
LOC110527895 LOC106582874 coding upstream 163 47389606 ~ 47403739 (-)
LOC110527896 LOC106582875 coding upstream 15468 47404911 ~ 47416151 (-)
LOC110527898 LOC106582876 coding upstream 43559 47433002 ~ 47447036 (-)
LOC110527118 LOC105017368 coding upstream 74947 47464390 ~ 47465688 (-)
LOC118965292 LOC106572922 coding upstream 123491 47512934 ~ 47516740 (-)
G615256 NA non-coding downstream 128717 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 130404 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 133144 47225799 ~ 47226727 (-)
G615186 NA non-coding downstream 144427 47215166 ~ 47215444 (-)
G615178 NA non-coding downstream 148393 47210856 ~ 47211478 (-)
G616058 NA non-coding upstream 36409 47425852 ~ 47496066 (-)
G616112 NA non-coding upstream 151466 47540909 ~ 47541186 (-)
G616162 NA non-coding upstream 258100 47647543 ~ 47749086 (-)
G616328 NA non-coding upstream 619353 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 657473 48046916 ~ 48047153 (-)
G613411 LOC106582852 other downstream 1484171 45874965 ~ 45875700 (-)
G611674 NA other downstream 2874119 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3779907 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3822906 43526691 ~ 43537037 (-)
G616880 NA other upstream 1097604 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1794981 49184424 ~ 49186096 (-)
G617632 NA other upstream 1806161 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 1905812 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 2270592 49660022 ~ 49936575 (-)

Expression


Co-expression Network