LOC110527902 (LOC106582884)


Basic Information

Item Value
gene id LOC110527902
gene name LOC106582884
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47548957 ~ 47555818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609503.2
TCACTTCCGTCTTTTTCTCCTCGCCATTTTGGATTGTATTGTTGATTTGGTTGGGGTTAGTTGGGAACATTCAGGAGGGAAGGATTTATTGATGATTATCAGAGACTATTGTAACAGTCCAATGTATTTGATCTAATATGCACTAGCATGTATCACAAATATTTTGCATGTTAGAAAGTAATCTAACATATTGCAGATGGCACAGAgattctgctagctagctaagcagCAACACCGGCTTGGCGAGGACGAACAACAACTGCATCATTGAGTTGGATTCAATCGTTGGCCAGCTAGCGAGCTAACGTTACTTGCAAAGTAGCATTTGGGCTCCCAGTTGTTTTGTGGTCGGGTTCGGAGACATACCAGACTGGAAAGATGTATCAACTCCCTGTGAACAACCTCACTAGCATACGAAGAGCAAGGAAACAGGTGAAGAAGGCACTTAGTGACATTGGACTGGAGTACTGCAAGGAGCAAGCGGAGGACCTCAAAGAATTTTGCCCAGATGAGAACTATGTGAAGAATACTGTCTGCCTGGAACTTTGTTCATGGGATCCGTCATTCTCCAAAACACAGGAGTACCGGTCAAAGCCTTTCTGCTGCACAGAGTGCCATTTCTCTTCCAAGTACTACTCAGGCTACAAGAACCACTTTCGAAATGTCCACAGGAACAACTTTGAGAGCCGCATCCTGCTGAACTGCCCTTACTGCACTTTCACTGCAAGCAAGAAGACTATGGAAACGCATGTCAAGGTCTTCCACATATCCAGTGCGGTGCGTCAGGGTCTGGGTGCCTACCAGGGGGCTGCTATGGGCGCAAATAACAAGGTGGAGAGGGCAATGTACTATTGCAAGAAGTGTACCTACCGGGACCCTCTGTACAATGTTGTGCGAAGGCACATCTACAGGGAGCACTTCCAGCATGTGGTCTCACCCTATGTTGCCATGGTCTCAGAAACATCAGTCAAAAATGGAGCCAATGCTGTCAATGGTAACAACATCCTCTGTAAGCGCTGTCAGTTCTCCACCCGTAGCTATGAGGCGTTAGTGCAGCATGTCATTGAATATCATGAGCGCATTGGCTCTCAGGTGACAACCATGATTGGACATGCTAATGTTGTGGTGTCTAGACCCCAAAGCTATGGTATGACCCAGAAGGGTTCTGTGGTGACTGGGGGTCGTACTCTGACGTCTGAACAGGTTAGCCATATGGTGGGGGCCCATCAAAAGCAGGGGCCTTCTGGACTGAAGAATATGACCAGTCAGTCCTCTATTGCTGGCCAGCGTTTGACCATTCCTGGCCATAGTGGGTTGGGAGAAGGCAGAGCCTCCTTATCCAATAACTTAACGTCACCCTCAGGAAAGCAGGTTTCTGGTGCTAACGCTAGTCTTACATCCCAAACACAGAAGTGGAAGATATGCACGGTCTGCAATGAGCTCTTCCCTGAAAACTTGTACAGTGCTCATTTTGAGAAGGCACACAAGGCTAAGAAGGTATGGGCAATTGCAAAGTTCATCATGAAGATCCACAACTTCACCAGTAAGTGTTTGCTTTGCAACCGTTATCTGCCAAGTGACACGTTGCTTAACCACATGCTGATCCATGGGCTCACCTGCCCACAGTGTCATGCCAGCTTCAATAATGTGGAGAAAATGCTGGATCATGTGGGTCAGGCTCACCCAGATGACTTTGTTGGTCCTCCAGCTGCCTCCCCGCTAACCTTTGACCTCACAATTGGGCAGGCTAAGAACAAGATCATACAGCTTATTGTTATAACCTATAACATGAAGGAACCTGTAGCTGCCCAGGAGCAGTCTATGGCTTCCCATGCTCAGAACAGCTTCCTTGCTCCAGTGAAGAGTCTGCCTTCAAAGATGCCAGAAAGAAAGAATGACATGCTTGCCAGAAGTCAAGCCACTGTATCTGGCAGCAATGAGGTTGGCAAGACCCTATGCCCACTGTGTTTCACCATCCTCAAGGGTCCCATCTCTGATGCATTGGCACAGCATCTGAGGGAACGACACCAAGTGCTTCAGACGATGCACCCTGTGGAGAAGAAGTTGACGTACAAGTGCATCCACTGTTTGGGTGTCTACACCAGCAACATGGTGGCCTCCACGATCACTCTGCATCTTGTGCAGTGCCGAGCTGTGGGCAGGGCCCAGAAGGGTCCGGGACCAAAGTCTGCCTTAACACTCAACTCTTCTGGTGCAGGGTTCTTAAAGCGTCAGCTACCCACCCAAACCATGTCTGACTCCAAGAGGATGAAGATTAACAATGATGTTGGATATTACCCCATGGACAAGCCAGGGGAGGCTGTGGATCTAGTGTTGGACCCCAGAAGCTATGAGCACAAGACCTATGAGGCACGAAAAGCATTCCTCTCAGCCTATTTCAATCGTCGTCCCTATCTAACCTCACAGGAAGAAGAGAAGCTGTCTGCAAGCCTGTGGCTCTGGAAGTCTGACATTGCCAGTCACTTCGCTCACCGAAGGAGGTCATGTGAGAGGGACTGTGAGACCAGGAAATTGAAAGTGCTACTTGGCTTTGACATGCAGGCACTCAAGGGACTGAAGCATGACATGGACTTTGAGGAGAAAACCAAGCTCCCTGTCACCTCAGTGGAGAAAGCCTTTAAGTCTAGGCCGACACTTAACACAGACCAAAGCAAACGATGCGAGACAATTAACTGTACCCTCAAGCTAAGTACTTACACAGAAGTGACAGAACCCATATCAATTGACTCGTCTGATAGTGAGTCAGAACAAGAGGACTGTTCTGTTAAGAATGGGGAAGTTGACACACACAAATCTGTGGATGTCACATCTTAAGAGAAATCAAACCTGCCAGAAGAGAGAACTCCAAGCATTGATGGGCCTTCAAGAGAGAAGGTGCCTTGGTTTGATAACATGAGACATCAAAATGAGAAGTCTAAAAGACCTGCGGTACACAAAGTATAACGGGGGTTTGGTGCAGGTAATCATTGCACACTACAATTATTCGGTTATAGGAAAGTATGAGAGACTGACAGGACAAATGGAGACTTCATAAAGTCAGTGGGATGCGCAGTTTAAGTAAAGAACAATGACTTATGAATTAGGAACTACACAAGTATAGAAACAAACTTAACTTCTGGCTCCAGATAAACGTTTGCTGAAGTGAGCTAAACAATGgtgcaaaataaaatgtatggcGTCTGTAACTAATATTGGCTGTAACATTGTACATATTTAGTAGGCCTACATTAGATTATGCATACATTCAGACTAATGTCACAGTTTTAAgtgtaataaaaaaaaacgttCACTCTTCATATAGACATATGGGTTGTCCACCCATATGATGTATTATTGTCATTTACATTTTAGAGATAGCAGGGTAATATGTATGCCTATGTTCACTTTTGTTTAATAAAGCTGTTTGCAATTAACCTTCTCATTTGA

Function

NR:

description
activity-dependent neuroprotector homeobox protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609503.2 True 3447 mRNA 0.46 4 47548957 47555818

Neighbor

gene id symbol gene type direction distance location
LOC110527901 LOC106582883 coding downstream 349 47544593 ~ 47548608 (-)
LOC118965292 LOC106572922 coding downstream 32217 47512934 ~ 47516740 (-)
LOC110527118 LOC105017368 coding downstream 83269 47464390 ~ 47465688 (-)
LOC110527898 LOC106582876 coding downstream 101921 47433002 ~ 47447036 (-)
LOC110527896 LOC106582875 coding downstream 132806 47404911 ~ 47416151 (-)
si:dkeyp-97e7.9 LOC106582886 coding upstream 3750 47559568 ~ 47563955 (-)
LOC110527904 LOC106582888 coding upstream 50692 47606510 ~ 47612614 (-)
LOC110527908 LOC106582890 coding upstream 85411 47641229 ~ 47661989 (-)
LOC110527909 LOC106582893 coding upstream 131014 47686832 ~ 47696673 (-)
trpc4apa LOC106582896 coding upstream 218967 47774785 ~ 47788931 (-)
G616112 NA non-coding downstream 7771 47540909 ~ 47541186 (-)
G616058 NA non-coding downstream 52891 47425852 ~ 47496066 (-)
G615256 NA non-coding downstream 317803 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 319490 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 322230 47225799 ~ 47226727 (-)
G616162 NA non-coding upstream 91725 47647543 ~ 47749086 (-)
G616328 NA non-coding upstream 452978 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 491098 48046916 ~ 48047153 (-)
G616364 NA non-coding upstream 497119 48052937 ~ 48053207 (-)
G616370 NA non-coding upstream 502609 48058427 ~ 48058632 (-)
LOC110527888 LOC106582868 other downstream 278886 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 1673257 45874965 ~ 45875700 (-)
G611674 NA other downstream 3063205 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3968993 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 4011992 43526691 ~ 43537037 (-)
G616880 NA other upstream 931229 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1628606 49184424 ~ 49186096 (-)
G617632 NA other upstream 1639786 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 1739437 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 2104217 49660022 ~ 49936575 (-)

Expression


Co-expression Network