LOC110527945 (LOC106565815)


Basic Information

Item Value
gene id LOC110527945
gene name LOC106565815
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49115044 ~ 49117838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609583.2
TTTGTAGAAAACATATCAAAAAAACTCGTAACAACCTAAGCATTATGAAacttttatttgatcaaataagcctcacatatttaaaaaaaaaaaaactcctcaCTTGGTCTGCTTAATCTGCGCAGACAGATTTTGGGCGGAGTCGAccctctcgctttgcctcttcTTCTCTGGCTCTGTTCGTTGTGATATAAGAAGTGTAAAATTTGCGGAAGAGATGTTGAATGCAGGCGTGGCACTATAACTTCCGCCTtcaaacccagaacaacagaGAAATGACAGCGACACTACGCCCATACCTGAATGCTGTGCGTGCCACACTGCAGGCCGCTCTCTGCCTGGAGAACTTCTCCTCTCAGGTGGTGGAGCGCCACAACAAGCCAGAGGTGGAGGTCAGGAGTAGTAAAGAGCTCTTACTACAGCCTGTGGTAATCAGCCGCAATGACAAGGAGAAGGTCCTAATCGAGGGCTCCATCAACTCTGTGCGAGTCAGCATTGCTGTGAAGCAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCAGAGAACTTCTTCATTCTCAGGAGGAAATCCgttgagGGCTATGACATTAGTTTCCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTAGTGGACTTCGTCATCACCTTCATGGAGGAGATTGACAAGGAGATCAGCGAGATGAAGCTGTCTGTCAATGCCCGTGCCCGTATCGTTGCGGAGGAGTTCCTCAAGAATTTCTGAGGCGGTGTCATCGCATCCCTCTCACTTATCACATGACTTGGCCATGACCATGGATCTGTGAGAGAAAGGGCAGGCTCAAGGGCCCGATAGCAGGAAGAGGGTGGTGACGCGTACTGTGAGTGAACAACCAATCCATGGCGAAGACTATAGAAAAGTGACCAATCCAGTGTGGGTGTGGGGCACCCAACTGCGTCTCCCACGTATGTACTGTAGTCATAAATATTGATGACTGTATATAATTAAATGTTTCATTTTCTGCCTCTTAGAGCAAATCTCAAAACCAAGGCGGGTCCTTAAAAGTATTAACCAGGTTGATATTCATGACGGGGACAATGAGAATGTGTTGCAACTGAAACAGCCTGTATTGTTTTTATACATTCTTTATGTAcacttgtcttttttttttttttttttttttacaaaatattaACCTGTTAAGTACGCTCATCATGGAGAGAGGAAAAACAAGATGTATGGTTACATTTTAGTACAAGACGCATCACAGATTTATTAAGCTGTCATACGATACGAAATGATAATGATGAATGATATAATCAAATAAAACTCATGACAGCTTGTTTGTACTTTTGA

Function

NR:

description
actin-related protein 2/3 complex subunit 4-like

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609583.2 True 1373 mRNA 0.44 6 49115044 49117838

Neighbor

gene id symbol gene type direction distance location
LOC110527944 NA coding downstream 26849 49083910 ~ 49088195 (-)
LOC110527937 LOC106582921 coding downstream 110208 48997764 ~ 49004836 (-)
LOC100136282 LOC106582915 coding downstream 311966 48787061 ~ 48803078 (-)
LOC110527928 LOC106582913 coding downstream 343324 48747496 ~ 48771720 (-)
LOC110527927 NA coding downstream 378710 48727369 ~ 48736334 (-)
LOC110527948 LOC106582926 coding upstream 18850 49136688 ~ 49144153 (-)
LOC110527952 LOC106582936 coding upstream 157343 49275181 ~ 49289804 (-)
mustn1b mstn1 coding upstream 177202 49295040 ~ 49297305 (-)
LOC110527953 LOC106582935 coding upstream 185318 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 199746 49317584 ~ 49334930 (-)
G617540 NA non-coding downstream 74494 49007904 ~ 49040550 (-)
G617516 NA non-coding downstream 152647 48961907 ~ 48962397 (-)
G617517 LOC106582920 non-coding downstream 154440 48959418 ~ 48960604 (-)
G617513 NA non-coding downstream 155707 48958549 ~ 48959337 (-)
G617593 NA non-coding upstream 1176 49119014 ~ 49120233 (-)
G617594 NA non-coding upstream 4265 49122103 ~ 49122837 (-)
G617603 NA non-coding upstream 29354 49147192 ~ 49147481 (-)
G617605 NA non-coding upstream 34243 49152081 ~ 49153562 (-)
G617606 NA non-coding upstream 35971 49153809 ~ 49154080 (-)
G616880 NA other downstream 585876 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 1844973 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3239344 45874965 ~ 45875700 (-)
G611674 NA other downstream 4629292 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 5535080 43579093 ~ 43579964 (-)
G617624 LOC106582928 other upstream 66586 49184424 ~ 49186096 (-)
G617632 NA other upstream 77766 49195604 ~ 49195970 (-)
LOC110527961 LOC106565835 other upstream 542197 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1186610 50300364 ~ 50306278 (-)

Expression


Co-expression Network