LOC110527948 (LOC106582926)


Basic Information

Item Value
gene id LOC110527948
gene name LOC106582926
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49136688 ~ 49144153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609589.2
ATCTGATGTCAAAGATCGCTGACACAGTTGTTTTGGAGGAAGTGACAAGAGACTGAAAACGAAAGAAATAGGCCCTCTTCAAGTAAACAAGCAGGGATTCCTTTCGCTTAATAATTGCTCTTACTTTGGAAACACAAGTGGTCACCTAGTAGTATTGAAAGTATATTGCGTTATAATTAAAGAGACGTGCGTCCTGACTGCAACTAAACCACCACTGGTGGCACCAGCCAGTTTCCGTCCGATCTCGgcaactagctagctatccaGCTAGCCTAGGTTGGGGGGCAGACAGACGCAATTGAATTCATCTGTTTTTCATCCAGCACGACGAAAGGCCCATTTTGACATTCTTTAATATACCATCCATTGGTTCTGGTTGATCAAGCTGTGGCACAATGACGTCTAGGAAGAAAGTACTACTTAAAGTCATCATCCTGGGAGACTCTGGAGTTGGGAAGACCTCCCTGATGAACCAGTATGTGAATAAGAAGTTTAGTAACCAGTACAAAGCCAcaattggagctgatttcctgacGAAAGAAGTGATGGTGGACGACAGGCTTGTCACCATGCAGATCTGGGACACAGCGGGGCAGGAGAGGTTCCAGTCTCTGGGCGTGGCGTTTTACCGCGGGGCAGACTGTTGCGTGCTGGTGTTTGACGTGACCGCCCCCAACACCTTCAAGACCCTAGACAGCTGGAGGGACGAATTCCTCATACAGGCCAGCCCCCGAGACCCCGAGAACTTCCCCTTCGTGGTGCTAGGCAACAAGATTGACCTGGAGAACAGACAGGTGACGACTAAACGAGCACAGGCCTGGTGTCAGAGCAAGAACAACATCCCCTACTTCGAGACCAGCGCAAAGGAGGCCATCAACGTTGAACAGGCTTTCCAGACTATTGCACGCAATGCTCTTAAACAGGAGACAGAGGTGGAGTTGTACAATGAGTTCCCTGAACCGATAAAGTTGGACAGGAACGAACGTTCCAAGCCATCAGCGGAGGCCTGCAGCTGCTGAGGTCCTAGCAGACTTACTTTCGGCCCTGCTACCCTGTCTTGCCTTGTCTAACCCCTATGCCTCACTGTGTGCTCCCCTTTGCCCAATATTATCACTGGCCTTCGTAGATGCGAGTTCCCGCTCGAAAAGTATACTTTACACATCACACACTTACTCTCAAGATAAGTCTCCAAGCCCAAAGAACACCCAGATGGATAGTAGAGCATTTATTAACCTGATATCTGCTTAGTATTTCCCCCTTAACTGTCTCATGACAATACCTTTTTTTATAGACACCATTGTTTCCATGGCACCACCCAacctcacacacatgcatacatacagaaATAAAATCCTATGACATTTTAAAGGGGGGGGGTTAGTTCCAGTGGTAAAGGAGGTTGTGAAGGATCAGAATGatgaatttatatatatatatatatatatatatatgtatgtatgtgtgtgtgtgtgtcatgccaATGTACTGCCCAAAGATACATGTGTTAATTGTCTTGGAAGTGAACTAGCAAGTCCAACATACGAGTGTGTTGTTCAAGGCATTTTTTTTGCACTTTGTCATGTAGACTTATTAAAATCCTGTTTGACACCTCATTTTGGAGCCAcaataaaaaacacacattttatgTCGAGGCTGAAGAGGCAGTGTGGATTTTAACTCTACTGTCCCCTATCTGCCCGACACATGCTTTGTTTCTCAATTGGAAAAGTCGAGCAGCAAATTGTCAACATTCTGCGACCTGACACAAGGGGTAGAGAATCAAAGGGAGGACGTCCTATCGGATACAGCTGGGGGAGGGGACAGATATTTTTCAAGCATATAAATATGAGTCATTATTAGTTATTGCCTCATTTTTACACTGGCAACTGTTGCAAGACTTTATGTGCAAATCTTTAAGTCTGTCAATTGTTTTGCGTAGGCAAAAACCCTGCATGTTGTCAGTTTCCATGTCTGCTGATAGCTCAGGTGCTTGATATTTCTTTTAACTGATCAGATCTGTCTGTATATTGTTATTACTATGTTTAGAATTTGAATTGCATCAGAGGACCGAGAACACAACTTTTTATTTAAATTATACAAAAAATACAGGGGAAATCGGTTAGCATTAATCATATTAATGAAATGGCTTCATCTACATTGTTTGAAAATGGTTTTGGATTTCAAGGAACTGATAAGTCATTGAATaaagaatgtgtgtgtttctgcaagGAGAACATGTAAAGCATAGGTGACTATCAAGgctcatactgaacaaaaatataaacgcaacatgtaaagtgttggtccaatgtttaatgagctgaaataaaagatcccagaaattttccata

Function

NR:

description
PREDICTED: ras-related protein Rab-7a-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609589.2 True 2351 mRNA 0.43 6 49136688 49144153

Neighbor

gene id symbol gene type direction distance location
LOC110527945 LOC106565815 coding downstream 18850 49115044 ~ 49117838 (-)
LOC110527944 NA coding downstream 48493 49083910 ~ 49088195 (-)
LOC110527937 LOC106582921 coding downstream 131852 48997764 ~ 49004836 (-)
LOC100136282 LOC106582915 coding downstream 333610 48787061 ~ 48803078 (-)
LOC110527928 LOC106582913 coding downstream 364968 48747496 ~ 48771720 (-)
LOC110527952 LOC106582936 coding upstream 131028 49275181 ~ 49289804 (-)
mustn1b mstn1 coding upstream 150887 49295040 ~ 49297305 (-)
LOC110527953 LOC106582935 coding upstream 159003 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 173431 49317584 ~ 49334930 (-)
LOC110527955 LOC100195900 coding upstream 198205 49342358 ~ 49380684 (-)
G617594 NA non-coding downstream 13851 49122103 ~ 49122837 (-)
G617593 NA non-coding downstream 16455 49119014 ~ 49120233 (-)
G617540 NA non-coding downstream 96138 49007904 ~ 49040550 (-)
G617516 NA non-coding downstream 174291 48961907 ~ 48962397 (-)
G617603 NA non-coding upstream 3039 49147192 ~ 49147481 (-)
G617605 NA non-coding upstream 7928 49152081 ~ 49153562 (-)
G617606 NA non-coding upstream 9656 49153809 ~ 49154080 (-)
G617607 NA non-coding upstream 11547 49155700 ~ 49155930 (-)
G617617 LOC106582928 non-coding upstream 28287 49172440 ~ 49173457 (-)
G616880 NA other downstream 607520 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 1866617 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3260988 45874965 ~ 45875700 (-)
G611674 NA other downstream 4650936 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 5556724 43579093 ~ 43579964 (-)
G617624 LOC106582928 other upstream 40271 49184424 ~ 49186096 (-)
G617632 NA other upstream 51451 49195604 ~ 49195970 (-)
LOC110527961 LOC106565835 other upstream 515882 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1160295 50300364 ~ 50306278 (-)

Expression


Co-expression Network