LOC110527952 (LOC106582936)


Basic Information

Item Value
gene id LOC110527952
gene name LOC106582936
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49275181 ~ 49289804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609596.2
CTACAGTAGGTAGAGAGAGTAGGCTATGTGGACAGACAAACAAATATATGTAAACACGCTGACACAAATCCCTAGAGGCATACAAGAACACAGATCTACACACACCTCGGGCCTCCTGCCACGCTGAGGTCAGGTCTTCTGGTCATTGCGCCAGTATAAAAGCAGACAAACGCACACACTCTGACACTTCTCCTTTGAGCTGGGCGGTAGGAAAGGGTTGAGTTTTCTAAGCAGTGAAGTCTGTGTTCAGCTGCAGTTTGGTCATGTCTGGAGTGTGGACTGTGCTGCTGCTATTGGGATGTGTCTTTCTCCCGGCTCTGTCGCATGGAGCTCTGGTTATCTCACAGGATGATTCCACACCACAGGGCTCTGATGGTGCTACACGGCTACTAAAGaaaagaAGTACAGATAATGCGGAGgTGGAGGTGTACAGTTTAAAGGTGGATTGTAAGGTCGCTTCTCGTTTTGCTCACACGGTCATAACCTCCAGTGCTCTGAACAAGGCCAACTCCTCTCAGGAAGTGTTCTTCGAGGTGGATCTGCCCAAGACCGCCTTCATCACCAACTTCAGCATGGAGATAGAGGGTCAGACGTACACGGGCGaggtgaaggagaaggagaaagccAAGAAGCAGTATCAGAAAGCTGTTTCCACAGGGCAGACTGCAGGACTGGTCAAGGCATCAGGGAGGAAGATGGAGAAGTTCACTGTGTCTGTGAACATCGCGGCCAATAGTAACGTCACCTTCATTTTGACCCACGAGGAGTTGCTTCAGCGTAAACTGGGCCAATACGAGATCATGACCCGGGTCAAACCCAAGCAGCTGGTTCAGCACTTTGAGATTGTGGCAGATATCTATGAACCCCAGGGCATTGCCTTCCTGGAGGCCTATGGAACCTTCATCTCCAACGAGCTTCTCCCCCTGGTGGAGAAAACAGTCAGCGACAAAAAGGCACACATCTCATTCTGCCCAACACTGGACCAGCAGAGGAAGTGCCTGGGTTGTGAAGGCACCCTGATTGACGGGGATTTCTTCATCAAATATGACGTGAACCGAGCTGAGACCATCGGTGACATCCAAATAGTGAATGGGTACTTTGTGCACTTCTTTGCGCCTTCGGACTTACCCCGAGTTCCAAAAAATGTGGTGTTTGTGATCGATAGGAGTGGGTCAATGAGCGGAATCAAAATGAAGCAGACAAAGGAAGCTATGCTGGCCATCCTGAATGACCTGGCTGAGGACGACTACTTCGGCATTGTCCTATTTGACTCTAGCATCTCAACATGGAAGGAATCTCTTACCAAGGCCACCAAGGAAAATGTGTCAAAAGCCCAACAATTTATCCAGGGAATAACTGTTTCGGGAACCACTAATATAAATGATGCTGTGATGAAAGCTGTGGACATGATAATGAAAGGCAAACGAGACAAGAAGGTCCCGGAGAGGAGTGTGTCTATGGTTATCTTAATGACAGATGGAATGCCCAACTCAGgaGAGTCTTCTGTACCACAGATTCAGGAGAATGTCCTTCTTGCTATGGGTGGGAACATGACTCTGTTCTGTCTGGGCTTTGGGGATGATGTGGACTACTCCTTTCTGGATGTGATGTCTAGACAGAACAAGGGACTGGCCCGAAGGATCTATGAGGGCTCTGATGCCACCGTCCAGCTTCAGGGTTTCTATGAGGAAGTGGCCAGCCCCCTCCTCTCCGAGGTGGACCTGCGTTACCCTGACAACCTGGTGAACTCTCTGACTACCAGTCACTACAAGCAGCTGTTCAACGGCTCAGAGATCGTGGTAGCTGGCCGGCTCACTGACTATAGCCTGGATAACTTCCTGGTGGAGGTGTTTGCACATGGGTATGAGGAGGACTTTATTATCAAAGGCCAGGCCAGTGCCCAGGAGTGGGACATACTGTACCCTGAGCAGGAGTACATATTTGGGGACTACACTGAGCGTCTTTGGGCTTACCTCACCATCCAAGAACTGTTAAGCAAGAGAGAGACTGGTACTGCGGAGGAGAAAGGAAATGCTACTGCCCAGGCTCTGGAGATGTCCCTGCAGTACAGCTTCGTCACCCCCCTTACCTCCATGGTGGTCACCAAACCTGAGACTGACGAGGAGCCAGAGGGCCCCCTCATCGCCGACAAGCTGACCGAGGATGAAAGGCAGAAAGCCCAGAGATTTGGTCATTTTGTACCCCAGCTGATGAGCAACGCCTGGACGCACAGCAGGATCTCACCTACAAACTTTGTGGATGGAGACCCTCATTTCATGATTGAGTTGCCAGAGCAGGAGGATGCACTGTGCTTCAACATAGACGACAGGCCTGGTACCATCTTCAACCTAGTGAGAGACCAACTGGCAGGTATTTTGGTCAACGGCCAGACCATTGGGGATAAGAAAGTGGCCCCTGATGGCAAAGTGAACACCTATTTTGGTCGCTTTGGCATCGTTCACCAGGGGCTGGGGGTGAGACTGGAGGTGACCACTCATGACATCACTGTGTCCCAGGATGGCAAGCAGGCCAAGCTCTTCTGGTCAGACACCGCCTCTCTCAAGGGAGCCAAtatggACCTGCAGGTGACCAAAGACCGCAGCTTGACTGTCACCCTCAGGGACTCGGTCCGGTTTGTGGTCATCCTACACAAGGTGTGGAAGCAGCACCCCTACCACCAGGACTATCTGGGATTCTATACCCTGGACAGCCACCTCTTATCCCCCAGCGTCCACGGCCTTCTAGGTCAGTTTTACCATGGCGTGCAGTTTGAGGTGAAAGACATGCGTCCAGGAGAGGTGCCAGAGAAACCAGATGCCACCATGCTAGTGAAGGGACAGGAGCTTACAGTGACTAGGGGCTGGCAGAGGGACTTCCGCTGGGATGTGAAGAATGGAGAGAACATCCCCTGCTGGTTCATCCATAGCAACGGCAACGGCCTCATCGATGGAAACCACACAGACTACATCATGTCTGGACTCTTCAAGACTGTCTGAGTCTGGTACACTAGCAGTCAACCTCCTCAAACTGTACAGTACATTAGTCACACATTTCACATGGATTCAACACCCTGTATGTGCTGAAGATATACCATCATGACATGAGAATAATTGTGGGTAACGTTAGATAACATCTGACTGGAGTACATTTAATTAAAAGATAAGTGGCAAGAAAGGGGACATTTATAGATATTGATATAGATAGTGATGAGCAAAACCTGTTGAAATAAATGGACCCACTTCCACCTAACTTGTGTGTATTTAACCAATGTTGAATGGCcacggagagagaaagatatacagAGTGATTAAAAATCAACGCCCCTGTGTGCTTGACGTAGGGGCGTTGGTCAGACCTGA

Function

NR:

description
inter-alpha-trypsin inhibitor heavy chain H3-like

GO: NA

KEGG:

id description
K24513 ITIH3, SHAP; inter-alpha-trypsin inhibitor heavy chain H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609596.2 True 3359 mRNA 0.50 22 49275181 49289804

Neighbor

gene id symbol gene type direction distance location
LOC110527948 LOC106582926 coding downstream 131028 49136688 ~ 49144153 (-)
LOC110527945 LOC106565815 coding downstream 157343 49115044 ~ 49117838 (-)
LOC110527944 NA coding downstream 186986 49083910 ~ 49088195 (-)
LOC110527937 LOC106582921 coding downstream 270345 48997764 ~ 49004836 (-)
LOC100136282 LOC106582915 coding downstream 472103 48787061 ~ 48803078 (-)
mustn1b mstn1 coding upstream 5236 49295040 ~ 49297305 (-)
LOC110527953 LOC106582935 coding upstream 13352 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 27780 49317584 ~ 49334930 (-)
LOC110527955 LOC100195900 coding upstream 52554 49342358 ~ 49380684 (-)
LOC110527956 LOC106583046 coding upstream 99233 49389037 ~ 49433382 (-)
G617637 NA non-coding downstream 7048 49205572 ~ 49268133 (-)
G617628 NA non-coding downstream 83623 49191356 ~ 49191558 (-)
G617621 NA non-coding downstream 93610 49180790 ~ 49181571 (-)
G617618 LOC106582928 non-coding downstream 97084 49174363 ~ 49178097 (-)
G617617 LOC106582928 non-coding downstream 101724 49172440 ~ 49173457 (-)
G617650 NA non-coding upstream 8841 49298645 ~ 49301227 (-)
G617730 NA non-coding upstream 124322 49414126 ~ 49414400 (-)
G617875 NA non-coding upstream 252949 49542753 ~ 49542966 (-)
G617876 NA non-coding upstream 253223 49543027 ~ 49543236 (-)
G617877 tmf1 non-coding upstream 253516 49543320 ~ 49543686 (-)
G617632 NA other downstream 79211 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 89085 49184424 ~ 49186096 (-)
G616880 NA other downstream 746013 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 2005110 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3399481 45874965 ~ 45875700 (-)
LOC110527961 LOC106565835 other upstream 370231 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1014644 50300364 ~ 50306278 (-)
G619733 NA other upstream 1666467 50956271 ~ 50958540 (-)
G622985 NA other upstream 4015732 53305536 ~ 53322831 (-)

Expression


Co-expression Network