LOC110528962 (LOC106582933)


Basic Information

Item Value
gene id LOC110528962
gene name LOC106582933
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49317584 ~ 49334930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983434.1
CTCAACGCCGACAATATCAGCTACTCTGGTTTAGAACGTAGATATAGGCGGCAGAACATGCGCAGTGGCAGTTTGTGCCATATTGGAATGAGGTCGTGAACGACTAGGCGGAAAGAGACGGCATCTAAAACCGACTTGAAAAACTATTTACTGTGCACGTTCCAGTGTGAAAGTTGGATCATCAGCGCTCGTGCCTTCAAATTAATATCCATATTGCGAGCTTCTAGACTTGGCCTGTGGGAGGAGCTAACATGAGTCACGAGTCACTGGAGTCTGaTGAGGACTCGAGTCAGCACGTGTCTGACTTTAACTGGGATGAATATCTGGAGGAAAACGGGACCTTGTCTGTTCCCCACCATGCCTTCAAACACGTGGACCAGGGCTTGCAGACAGGGCTGACTCCAGGTATGAAGCTGGAGGTGTGTGTGCGTTCAGAGCCTGACCAACCCTACTGGGTggccaccatcatcaccacctgtGGCCAGCTGCTCCTCCTGCGCTACGAGGGTTACCACGATGACCGCCGCGCTGACTTCTGGTGTGACATCATGACGGCGGACCTCCACCCCCTGGGCTGGAGCCGGCAGCAGGGCAAGCCCATGAGACCCTCCGAGGGTGTGAGAGAGAAGCAGCCAGACTGGGAGGGCATCCTGGAGAAAGCCCTGGCTGAGAAGTGCAGTGCACCTGCCAACCTGCTGGAAGGGcGTCGTAAGGACCCAGTGGACCTGATGTCTCCAGGCTGCAGTGTGGAGCTGCAGGACAGTTTTGACCCTGGGGTGGTGTGGGGCGCTGAGGTGGAGGAGAATGTGGGTGGCAGGCTGAGACTACGCCTAGCTGGCACAGAGGGGCTCCCTGAAACACACTCCACCCTCTGGCTCTACTACCTGCACCCCCGCCTCCACCCACCTGGCTGGGCCAAGGAGCATGGCTGCACCCTCAGGCCTCCTTTAGCCCTGGTCGCCCTGCACACAGAAGAGAAGtgggaggaggtcagacagaggatGATTGATCAGCCTCATGATGAAGCCCTCTCTGAGGAGTTCTATAAGGACCGGCCTGTCATCGCTGCCCACTGCTTCACTGAGGGGATGAAACTGGAGGCCGTTGACCCTGCATCCCCATTCTGCATCAGTCCTGCTACCGTTACCAAGGTGTTCAGTGACCAGTACTTCCTGGTAAAGATGGACAATCTCTGTGGTGATGATTTGGTGTCAGAAGGCAGTGGGAAGTCCTTCCTGTGTCACAGGGACAGTCCTGGGATCTTTCCCGCCCAGTGGAGCCTGAAGAACGGTCTCCCGCTCAGCCCCCCTCCAGGGTACCAGGGGCAGGACTTTGACTGGGCAGACTACCTGAAACAGAGTGAGGCTGAGGCAGCACCACACCACTGTTTCCCCACAgaaCAGTCTGATCACAGCTTTAAAGAGGCCATGAAACTGGAAGCGGTCAACCCACTCTCACCTGAGCACATTCATGTGGCATCAGTAATCAAGGTTAAAGGGCAACATATCTGGCTTGGCCTGGAAGgGCTGAAACAGGCTATGCCAGAGCTTATAGCTCATGTGGACTCGTTTGACATCTTTCCTGTCAGCTGGTGTGAGACCAACGGTTACCCTTTGCTGTACCCCATCAAGCCCGAAGTTGAGAAGCAGAGGAGGATTGCTGTGGTGCAGCCTGAGAAACACCGAGCTCCACCCAAATCCACAACACCTGATGCACTCAAGCAGCAGATGACCAGCCAATCAGAGACTGGACAGGGGAACGGGAAGTACTGCTGTCCTAAGATCTACTTCAACCACCGCTGCTTTTCTGGCCCCTACCTGAACAAGGGCCGCATCGCTGAGCTGCCCCAGTGTGTCGGCCCTGGCAACTGTGTCCTGGTGCTCAAAGAGGTGTTGACTCTGCTGATCAACTCTGCCTATAAGCCCAGCCGGGTGCTCAGGGAGCTGCAGCTGGACCAGGAGAACCGCTGGCACGGCCATGGAGAGACGCTCAAAGCCAAGTACAAGGGAAAGAGTTACCGGGCTACGGTGGAGATAGTGCGTACAGCAGACTGCGTGGCTGAGTTTTGTAGAAAGACCTGCATGAAGCTGGAGTGTTGCCCAAACCTGTTTGGACCTCGCATGGTTCTGGAGCGCTGCTCAGAGAACTGTTCTGTGCTCACCAAGACCAAATACACTTATTACTATGGTAAGAAGAAGAGTAGGCGAGTGGGCCGCCCACCAGGGGGGCACTCTAACCTGGAAgggggggtgaagaggagaggtaggaggaggaagaggaggaagcaaCTCTTCGTCCATAAGAAGAGACGCTCCTCAGCCTCACTGGACAACACACCTGCCGGTTcaccacaggggagtgaagaggaggaggatctgGATGATGAGGACTCTCTGAGTGACGATACTGGCTCTGAACTCCAGGATGATCAGGACGATTCAGAATATTCCATTGGGAAGTCACAGCCACCcaccccttccccttctcctcctgcAACGCCCCGGCCAACCCGAAAGCGCAGGAAACCTCACTCCCCATCCTACTCTGATGATGAGAACCACCCACCTTCACCAAAGCGCTCAAGAAGTGAGGCTCCCCAGAAGCTGTGTTTGGACACCAGTCCCCTAGAGTGgagtgtgactgatgtggtgcgTTTCATCAGGACCACCGACTGTGCTCCCCTGGCTCGCATTTTCCTGGATCAGGAGATTGATGGACAGGCTCTGCTCCTTCTCAACCTGCCCACGGTGCAGGAATGTATGGACCTGAAACTGGGACCAGCCATAAAGCTGTGTCACCATATCGAAAGGGTCAAACTGGCATTCTACCAGCAATTTGCTACGTAGCTGAGGGTTCTAAAATAAGAGAAACTTTACATAGTCAGTAACCTGAAATGATTCCATAACTGATCTACCACTGGACATCCTTTGGACCCTGCACCCAGGCCCAgcaaacagcagcagcagcagtcaggCATGGATATCAGAGGATTCAAGACTTGCATTGTTTCTTTGCAATTTCTACTGTATGGTCAGAGAGGGGTTTACCCCGCTTTATTCTAGGCAAAGACATCTCACATGGATATTCATATTCAGGTTTGTCACCCACAGTCTCAAAATGACTCCTGGTTTCATTTGATCAACTTGCAAGCATGGACAATGCAAGGTTCTAAGCACAAAGACAAATAAACCACTGTACTATATTGTGGTATGCAAAGTTTATCTAACAGGGTGTATTTGTGTATAGTGTACATATTTAACAGCTATTCTAGTACAACAGGGTGATTAATGGTTATAGCTTGATTTTCTACAAAACATATTTGCTTTGAAAGTATTTGTGAAGGCCTTCATTCAAAACAGCCTTTTTGTTTTCTCTGAAAATGATTTGAACTTATATTGAAGACATTGGGGCCTGTAGTAAAAGCATTTAGGATTGAGGTGTTTTTGGAGCAGAAATCAGATACATTTTTATAGTTTTACCTTTTTCCTACAACCATCGGTAGATTACTGGGTATTGTGTGGTATTTTATTTTTGTTAGCCAACTAACTCTTTGCTGTGTTTTTAGTTTCCCTCGTTTACCCGGCTCTGCCACTGagatcaaatatattttacaggAGATACAATTGATTAATTTGACTGTATATGTTTGTGGAATATGATATTTAAGAGAATATGGAATAAAAGCCTGAATCTCTTCCCCATGAGATTCACGATCTTTCCTACA

Function

NR:

description
scm-like with four MBT domains protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983434.1 True 3724 mRNA 0.51 22 49317584 49334930

Neighbor

gene id symbol gene type direction distance location
LOC110527953 LOC106582935 coding downstream 53 49303156 ~ 49317531 (-)
mustn1b mstn1 coding downstream 20279 49295040 ~ 49297305 (-)
LOC110527952 LOC106582936 coding downstream 27780 49275181 ~ 49289804 (-)
LOC110527948 LOC106582926 coding downstream 173431 49136688 ~ 49144153 (-)
LOC110527945 LOC106565815 coding downstream 199746 49115044 ~ 49117838 (-)
LOC110527955 LOC100195900 coding upstream 7428 49342358 ~ 49380684 (-)
LOC110527956 LOC106583046 coding upstream 54107 49389037 ~ 49433382 (-)
LOC110527961 LOC106565835 coding upstream 325092 49660022 ~ 49936575 (-)
LOC110527963 LOC106583034 coding upstream 944681 50279611 ~ 50300137 (-)
LOC110527964 LOC106583033 coding upstream 965434 50300364 ~ 50306278 (-)
G617650 NA non-coding downstream 16357 49298645 ~ 49301227 (-)
G617637 NA non-coding downstream 49451 49205572 ~ 49268133 (-)
G617628 NA non-coding downstream 126026 49191356 ~ 49191558 (-)
G617621 NA non-coding downstream 136013 49180790 ~ 49181571 (-)
G617618 LOC106582928 non-coding downstream 139487 49174363 ~ 49178097 (-)
G617730 NA non-coding upstream 79196 49414126 ~ 49414400 (-)
G617875 NA non-coding upstream 207823 49542753 ~ 49542966 (-)
G617876 NA non-coding upstream 208097 49543027 ~ 49543236 (-)
G617877 tmf1 non-coding upstream 208390 49543320 ~ 49543686 (-)
G617878 NA non-coding upstream 209173 49544103 ~ 49544412 (-)
G617632 NA other downstream 121614 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 131488 49184424 ~ 49186096 (-)
G616880 NA other downstream 788416 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 2047513 47260325 ~ 47284791 (-)
G619733 NA other upstream 1621341 50956271 ~ 50958540 (-)
G622985 NA other upstream 3970606 53305536 ~ 53322831 (-)
G625426 NA other upstream 5737549 55072479 ~ 55075396 (-)

Expression


Co-expression Network