XLOC_024976 (BX004816.1)


Basic Information

Item Value
gene id XLOC_024976
gene name BX004816.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2971852 ~ 2979129 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049523
GTCCAACCAGTTTTTGCTGTAGAGTACATGCGCACTTTCATTAATAATCATGCAGCGGTTTAATCACTCGGCTAGAATGGTTTATTTCTTAATGTCTTGTTAAATGTTTTGTGAAGATGGCAGAGAGCAGCGCATTATCCAGACAGTCTGatgatgatgctgatgatcTGAGGATTGTGCTGCTAGGAAAGACAGGTGTTGGGAAGAGTGCATCAGCAAACACTATACTGAGAAGAAAATCTTTTCAATCAGTGCTGACTTCACAATCAGTGACCAAAGAGTGTCAGAAGGAGACTGCTGAGTTCAGCAGAGAACACATAAGTGTCATTGACACTCCAGGCCTGTTTGACACTGGAATTGATAATGCTCAGATCATGAAGGAGATTGTGAAGTGTGTGTCAATGGCAGCACCAGGACCGCATGTGTTTCTGCTGGTTATTCCACTGGTACGGTTCACAGATGAGGAGAAAGATGCGGTGAAGATGACCCAAGAGATGTTTGGTGATAAATCCAGAATGTACACCATGGTGCTCTTCACCAGAGGAGACGATCTTGAAGGATCCAGAATTGAAGATTATATTGAAGGAGACAGAAGCTTACAGAACCTCATCCATCAGTGTGGAAACAGATACCATGTGTTCAATAATAAAGAGACTGAAGATCAAACACAGGTCTCTGAACTGCTGGAGAAGATTGACCGCATGGTGGCAGTAAATGAAGGAGGTTATTACACTAatgagatgtttcagcaggtGGAGAAAAACATCAGAGAAGAACAAAAGAGAATCCTGAAAGAGAAAGAAGAGGAAATCAATAGGAAAAAAGAAGACATGAGAGACAAATATGAAGCAGAAATGGAGCAAATGAAGAAGGAAACTGAGCAAAAAAGACAAGAGATGCAAGATGAACTGAGAAAACGCAAAGAGGAGTTTGAAAAGGAAGAGGAGGAGATTAAGAAAGAAAAAGATGAAAGACTACAAAAAGAGCTGCAGAAAAAACTGGAGGAACAGCAGAAACAGCTTGAAGAAGAGAAAAAGAGGACGGAGAAGGCTCTGGAAGAACAACAGAAGAAACACATAAAATACCTGGAAGAAAAACATGAGAAAGAAAGCCAAAAACTTAAGGAGGAAATAAAACGTGAAACTAGAAAGCAAGCAGAGTGGGAATACCGTAAAAGAATTGACAGTATACCCTACAGGTCAAAGCGAGCTAGTGACTGGGGTTACTATGTTCCTGTTGTTGGAGCAGCTGCTGGGTCAATTGTTGGTTCTGGTGAAGACCTTTTCCATTGGATTTTTGGTTGATTTCTTAAACAGCATACTCCAAACAAAAGGTAAATTCAGGTCAATGGAAATATTTTTAACACTAAATATTCTTCATTTTGGTCCAAAATCATGGTTATTTTGTGTTGTAATGATTTATCTGATCTTGTACAGAAATACTTTGTGTTTATACTAATTTTGCCATTGTTGTTTTTGCTACAGATTTCAGACCCCTGGTGCCCAGTGAAAACAGAAAATTGTCTGCAAAACTGTATATAGTAAAAAAATGCTTAACTAAAAATGATCTTCTCACATCAAGAGTATGATGCAAACAACAGACTTGTCTTTCTGAACATATATATTGCATGGTATAGATTCAAATCCTAGCTCATTTATTTCTTAACTGTCCACCATTCATCTGATGTGTGTGCTCACTCCACTCTGTCACTCATCTATGATCTCTTCATCTACCTGCAATGCACTTAATTGCTACTTAAGTTGTCGGTTCatgacaggtaatgttctgttgcTGCTGTGTACTCtgctgtaaatattttattttattttttatatttttctattcaATGATCTTTAAGCCAGTTTGCAGtaaaatggataaaaagagttGGAGGTCAATACATGAGTTTGCAATGTGCTTCTGCTGAGGCTGGTCAAGCAAAAGTCTCTGTTGTTTCAGTTTAACGTTACTGTAAAGCTTTTTGATTCTGATATTGTGGTCTAAAACTCCTTCACAAACTCTCCACTGACCTAAatcctgctctctcattggctgttgaTCTTTGCTTATGTCTTTTTCAGTCAGAAATCATTGATCATAGCATCACTTTAgttcagatatttagcatgtcaaATATTTAGCAGCAACATGTTGAAGACTCTCTCTGATCACGTTTTGGATCATTCACACTGTGGGAATGGGCACGGATTTGCCTTGCCATTTCTCCAAACCTGTCTTCGAATGCAAATTAGGGCTAAAATGCAGTGTGAACTCACATAAAAGACTCTGTTAATCATTTTATAAATCAGTCTGTAATCAAATACTATTACTGATATACTCACATATTGCCATGTTGTTGCTTGCTCCAATAAACTTCCTGAAACTTACTCCTGTCTCTGAGCTCTTCTATTGTAGCGCCCACTAGCTGtcagtatcacatactgtacctttACACCTGTAGAGTAGAGCCCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000040497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049523 True 2473 mRNA 0.39 2 2971852 2979129

Neighbor

gene id symbol gene type direction distance location
XLOC_024975 NA coding upstream 1867 2966612 ~ 2969985 (+)
XLOC_024974 BX004816.3 coding upstream 6514 2959343 ~ 2965338 (+)
XLOC_024972 CR388047.3 coding upstream 77403 2719243 ~ 2894449 (+)
XLOC_024973 CR388047.2 coding upstream 214245 2754885 ~ 2757607 (+)
XLOC_024971 CR388047.1 coding upstream 298209 2669813 ~ 2673643 (+)
XLOC_024977 NA coding downstream 42932 3022061 ~ 3072467 (+)
XLOC_024978 si:dkey-30g5.1 coding downstream 120363 3099492 ~ 3100238 (+)
XLOC_024979 si:dkey-30g5.1 coding downstream 134414 3113543 ~ 3115574 (+)
XLOC_024980 si:dkey-30g5.1 coding downstream 160111 3139240 ~ 3139974 (+)
XLOC_024981 NA coding downstream 300480 3279609 ~ 3280874 (+)
XLOC_025429 BX649540.1 misc downstream 27269610 30248739 ~ 30249036 (+)
XLOC_024967 NA non-coding upstream 827907 2142629 ~ 2143945 (+)
XLOC_024965 NA non-coding upstream 1159589 1811391 ~ 1812263 (+)
XLOC_024964 BX321875.1 non-coding upstream 1167370 1782815 ~ 1804482 (+)
XLOC_024958 NA non-coding upstream 1338634 1631812 ~ 1633218 (+)
XLOC_024984 NA non-coding downstream 503873 3483002 ~ 3489660 (+)
XLOC_024987 NA non-coding downstream 592698 3571827 ~ 3572831 (+)
XLOC_024992 NA non-coding downstream 690505 3669634 ~ 3674174 (+)

Expression


Co-expression Network