XLOC_025096 (sstr5)


Basic Information

Item Value
gene id XLOC_025096
gene name sstr5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11101585 ~ 11122914 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049624
CAGGTCCATTCCTGATGAAACGAGCTGAATAGCTCAACCGTTTTACTGAAGAAAACACTTGAACTAGATCTAGACATTTGCTGGAGTCTTGGGTACAGATTTCACTTAAATAGTTGTCGGAATGTGATTGTTTTAGCCaaactaagcaaaaaaaaattatgtgcgCACGGCAGCATTACTTCTTAACGTGAAGTCTTTAGACTGGAACTGAGGATGAAGTGATGTCCAGACTTTCGATTTTGGATTTAAGTCAAAGAGACTTTCAGTCATCAAATATCACTATTGTTCACTGAAAAGGAGACGAGTAGCTTGTGGAAGAGCTCCTGGCACCCAGAGGACCGTGCACTGAGTTTGAGCCCCCCTGGTGACCACATTTGCGCCTTTATCCAAACATGGCAACCCAAGAGCCGATATACAACACATCCCTCTCAAACCAAACCACCAATTCCTCCAGTGACCCTAATGAAAATCTGCTGGCTGAAGAAGAAAGCACTAAAGCCCTGGCTGTGATCTACCTCGTGGTGTTCATCGTGGGTCTGACAGGAAACTCTCTGGCCATTTTTGTAGTTCTCCGCTACACCAAAATGAAGACGGTCACCAACATGTACATCTTAAATCTAGCCGTGGCTGATGAGCTGTACATTCTGGGACTCCCGTTTCTCACCACCCACAATGTGCTCTCTTACTGGCCCTTCGGAAACTTCCTCTGCCGTATCCTGATGTGGGCCGACTCCATCAGTCAGTTCACCAGCACATTCTGCCTGACAGTAATGAGCATTGATCGCTACATGGCTGTGGTGCATCCTATCCGTAGTGCCAGGTGGCGGAGACCCAGCGTTGCCAAGGTTATAAATAGCATGGTATGGGCCCTTTCGTGTCTGCTAACGCTGCCAGTCATTATTTATTGTGacgtccagccgggactcaacaCCTGCAACCTGAGCTGGCCTGAGCCTCGTGACGTTTGGTCCACAGCTTTCATCCTCTACACCGCCATATTGGGATTCTTCTGCCCACTGCTAGTTATTTGTCTATGCTACCTGCTAATCGTGATCAAAGTTAAATCCGCCAGCGCACGAGCCGGACTCTCAAAGCGCCGTAAATCTGAGAAGAAAGTGACTAGAATGGTGGTGATCATCGTTGTTGTGTTCGTAATTTGCTGGCTGCCGTTCTTCATGCTGAACATCTTCAATCTGGTGGTCACCCTTCCAGAAAATAACATCATCACCGGCGTTTATTTCCTCACGGTGATCCTGACATACGTTAATAGCTGCGCCAATCCGCTGCTCTACGGATTTCTGTCGGACAACTTCAAGAGGAGCTTCCAGAAGGTCTTGTGCATCCACAGGGTCAACGGGGTCAGCGATGAACATCCCAACCGCGCTCGGATTAGCAGGAACCATCAGGAGCCGTTCTTTCCTCCGAGAAGCTTCGATTATAATGACCACGTCCAGAGCTATCAATCTATTGGTTTGGATGCCGAGCACTGCGCCAAACCTGAAAACCACCATCCGGGACCACAAGTGATCAGCCAGTCCATCTAAAAGCCAGCGTTGTCCAACTGAAGACATTCCTGCATACAAACAGTACTGTGTTTAAatggagtttatttataaagttattGTTGACTAAGCCTAGATCAAACACTCTCTGGTGCACACACAAAGAAACTACATTGCCATATTGTTATCATTTATGTAAATATCTTTCatgtaaatatgtattatatttgctCATCATTTTGTTCAgcatgactgaaaaaaaaacatttggaccACTTTTGCTGTTACAACTTGATAGATTGTTGATATTTGGTGGTGGTGTTTTTGTGGATTTCTGGATTGAGTATACACAAATCCATTTCATATATATAGAACTTGGAGGAAATGCCAGCTAGCCTGCTGTATTTATTAAAGACATATTTTTGTTGATGATGGATGAAGCTCCATGTCTGAAGCAGATAACAAACAATTGCCCAGAAGATCTTCAGAGCTGAAATGAAATGCACAGGCAGAATTTGGGTGTTTGTTCTTGTTCTTCTTGGGTTTAAAAAAGGGATACTTGTATTAAGCTATATTagtctttgtgtttattttactcCTAATAAACCTGAGATACAGTCTAACAA

Function

symbol description
sstr5 Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to glucocorticoid stimulus; neuropeptide signaling pathway; and regulation of insulin secretion. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in bipolar disorder. Orthologous to human SSTR5 (somatostatin receptor 5).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0071385 cellular response to glucocorticoid stimulus biological_process
GO:0050796 regulation of insulin secretion biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0004994 somatostatin receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04935 Growth hormone synthesis, secretion and action
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-040426-2502 Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to glucocorticoid stimulus; neuropeptide signaling pathway; and regulation of insulin secretion. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in bipolar disorder. Orthologous to human SSTR5 (somatostatin receptor 5).

Ensembl:

ensembl_id ENSDARG00000101655

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049624 True 2128 mRNA 0.44 3 11101585 11122914

Neighbor

gene id symbol gene type direction distance location
XLOC_025095 mrps7 coding upstream 26109 11072958 ~ 11075476 (+)
XLOC_025094 NA coding upstream 44662 10991040 ~ 11056923 (+)
XLOC_025093 NA coding upstream 101775 10953807 ~ 10999810 (+)
XLOC_025092 NA coding upstream 106980 10943127 ~ 10994605 (+)
XLOC_025091 NA coding upstream 163179 10933486 ~ 10938406 (+)
XLOC_025097 NA coding downstream 65509 11188423 ~ 11198265 (+)
XLOC_025098 NA coding downstream 203248 11326162 ~ 11333666 (+)
XLOC_025099 NA coding downstream 264024 11386938 ~ 11388541 (+)
XLOC_025100 mmd coding downstream 425602 11548516 ~ 11576337 (+)
XLOC_025101 CABZ01087224.1 coding downstream 445609 11568523 ~ 11587609 (+)
XLOC_025429 BX649540.1 misc downstream 19125825 30248739 ~ 30249036 (+)
XLOC_025090 NA non-coding upstream 352240 10746400 ~ 10749345 (+)
XLOC_025102 NA non-coding downstream 453761 11576675 ~ 11580720 (+)
XLOC_025103 NA non-coding downstream 732406 11855320 ~ 11858803 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000331_00091536_00099121 SSTR5 coding CI01000331 null 90835 ~ 99121 (-)