XLOC_025286 (BX322574.1)


Basic Information

Item Value
gene id XLOC_025286
gene name BX322574.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22854673 ~ 22880447 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049920
GAGCACGtcattaatgttgttgttggtggagaAGCTGCAAATATGGAGGAAAGAGAGTTGAGACAGGAAAAAATGTACTTTTCATGAACAGAGGGGGGAAATAGCTTCGCAAAAGTGATAAAGTGGAAGACGGCCGCTGAACTAAGACAGACCGTGACGCCGCGCGGAACAACAACAAGTATCAGAGAGGGTGTTCGGCTGGCACAGCTGCCATCAAAGTCCTCCTCATGAGGTCTACGGTCATGGCTGAAGCAGAGGACCCCCTTTAGAGTTGAAAACCTGGAACCTGGTGAACTTGAGGTTGCAGGCTGAGGTTTACCCAGAAGTCTTCTTTCTCTGCTTTGCTTACTACTTGGAGAACTTCAGGCAGGGAAGATCCCCGGCGGCATCCATGAATTCACCAAACACACCTGGTAAGAGTCTTTAAGTGCTCATGTTATGCTGTTCAACCTTGTTGCTTGCTAATGTAAGATCTTATGGTAATACTTTCAGCTAGGCATGGGCTattataagattctgacggtatgataacgtTGAATAAAAATGTCACAGTTTCGCAATATTGtttttactgctctaaaatatattctttttgagtgtctgggtaaaaaaacaaaaacgtttttCGTCTttcaacacaatatattttatttgagaaacatttaaaatattttagagcagtaaacatgtcaggctgaataattcaaatgaaattattgacttctgctgtattGAATAGGTTGCAAAACAcagattttattacaatttaaaaccacatcttggatatcttttctgctgaagatactgtaaAAAGATACTgtatatcttttctgctgaaaatactgtactaatgtaaaaaaaa

Function

GO:

id name namespace
GO:0042754 negative regulation of circadian rhythm biological_process
GO:0009056 catabolic process biological_process
GO:0090148 membrane fission biological_process
GO:0051646 mitochondrion localization biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0098852 lytic vacuole membrane cellular_component
GO:0044437 obsolete vacuolar part cellular_component
GO:0044440 obsolete endosomal part cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098353

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049920 True 862 lncRNA 0.39 2 22854673 22880447

Neighbor

gene id symbol gene type direction distance location
XLOC_025285 NA coding upstream 6477 22846336 ~ 22848196 (+)
XLOC_025284 tanc2a coding upstream 37218 22578369 ~ 22817455 (+)
XLOC_025283 BX649557.1 coding upstream 285567 22568987 ~ 22569106 (+)
XLOC_025282 coa3b coding upstream 303317 22426714 ~ 22551356 (+)
XLOC_025281 arhgap27l coding upstream 432504 22375596 ~ 22422169 (+)
XLOC_025287 hdac5 coding downstream 24894 22905341 ~ 22976456 (+)
XLOC_025288 lsm12a coding downstream 103651 22984098 ~ 22994433 (+)
XLOC_025289 si:ch211-237i5.4 coding downstream 119402 22999849 ~ 23020551 (+)
XLOC_025290 nags coding downstream 149037 23029484 ~ 23060121 (+)
XLOC_025291 b4galnt2.1 coding downstream 183271 23063718 ~ 23085279 (+)
XLOC_025429 BX649540.1 misc downstream 7368292 30248739 ~ 30249036 (+)
XLOC_025276 NA non-coding upstream 692191 22157933 ~ 22162482 (+)
XLOC_025274 NA non-coding upstream 857115 21929928 ~ 21997558 (+)
XLOC_025272 NA non-coding upstream 1256765 21378996 ~ 21597908 (+)
XLOC_025293 NA non-coding downstream 215995 23096442 ~ 23213329 (+)
XLOC_025296 NA non-coding downstream 526024 23406471 ~ 23411521 (+)
XLOC_025298 NA non-coding downstream 637512 23517959 ~ 23524650 (+)
XLOC_025299 NA non-coding downstream 724031 23604478 ~ 23616801 (+)
XLOC_025301 NA non-coding downstream 784714 23665161 ~ 23668197 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G169768 NA non-coding CI01000034 null 2243834 ~ 2259804 (+)
mexican tetra (Astyanax mexicanus) G142453 NA non-coding NC_035912.1 CM008315.1 19419660 ~ 19422462 (+)