XLOC_025305 (hoxb8a)


Basic Information

Item Value
gene id XLOC_025305
gene name hoxb8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23687909 ~ 23690481 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049948
CGCAGAGCGGTGTCCGTGTGGGGATGCGAGAAACCATAGTGGAACGAGGATCAGACAGAAGATGCAAATGATCATCAAAACACACCGCAAAATATGAAACTACTCATTTGCAGCCGAGTAAATCATAGAAAACTGATCGGGAACTGGCACCATTCGCCGGAATTGTGATGCTGGAACTTTACAGTGGGAACATGCCAATGGAAGCTTTAGATAAGTTGTTTTAACAAAAGGTATACACACGCAAGCCGCCCAGTAATTGGAAATCAACGCTTTGCTGCAACATTGTTACCTCAGTAACTGTGAGCTACTGCGCTTATATAAAGACATTCTATCGTAATCTCTTGAACAAAATCAGTACCACCACCAACAGCAGTAAAAGATGAGCTCATATTTCGTCAACTCTCTCTTCACTAAGTACAAAAGTGGAGACACTTTACGACCAAACTATTACGAGTGCGGATTTGCTCAGGACCTAGGGACGAGACCCACCGTCGTGTATGGTCCAGGCACCGGGGCCACTTTCCAGCATGCTCCTCAAATTCAGGAGTTTTACCACCACGGCGCATCCACGCTCTCCGCTGCGCCTTACCAGCAGAGTCCATGTGCGGTAACCTGTCACGGCGAGCCGGGTAACTTCTACGGTTATGATGCTCTCCAGAGGCAAACACTTTTCGGTGCTCAAGACGCCGACTTGGTTCAGTATAGCGACTGCAAGCTCGCCACGGGGGGCATCGGCGACGAGACGGACAACACAGAACAGAGTCCGTCGCCCACACAACTGTTCCCGTGGATGCGACCTCAAGCTGCCGGACGGAGACGAGGCCGTCAGACCTACAGCCGCTATCAGACGCTCGAACTGGAGAAAGAGTTTCTCTTCAATCCCTACCTAACACGCAAGCGTCGGATTGAAGTGTCACACGCTTTAGGACTGACAGAACGACAAGTCAAAATCTGGTTTCAAAACCGTCGCATGAAATGGAAAAAGGAAAACAACAAGGACAAGTTTCCAAGCAGCAAGTCTGAACAAGAGCAGATCGAAAAAGAAAAACGGGAGAAAGAACAGGCATCCGGTACACAGTCAGCCGGCGAAGACTGCGACAAGGCAAAACAAATGTAGAGCGGATGcaagcgtgtgtgtatgtgtgtgtgagagtgtatgtgtatgtgtgtgcgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgagtgaggcagtgtttgtgtgtgtcagtcaATCAAAATTGCAAGGAATATATAGGGAAAATCAAACAGACTATGATGAACAGAATAACGGTGCTTGCATGACAGGCTTGTCTCATAGAGACATTGTAATCAAGTCGGGTGGTTACATCTTTCACTCGAGGAAGGAACAGAAAAAATACTGGGACTTGACGAATGAATAATTTTAATGTGATGCCCACAGAACATCAGGAAGACGAAGGACAAGAAGCATTTCTACTTTTTACCTGTTGTTCAGAGAGTACGATAGTGTTAAAGCTAGTCTCCTTTCTTTGTGGAATAATTATCGTGAAACTTATGTTTCTATTGTTAGGATATTGTCATTAACAATTACCTTGGCAGCTGTATAGTTTTTAAGTTAAATGGTGCACTTTTAACTGTTCTCACTTATATGTTATGATGACGTAGAAATTACTGACTTCCAACAACATGAAACTGCCTATTTATGCCGTAGAATCTCTTTTTACACGTCTTTGGTTCTTCTTAAATCGATGGTATTTTTGTTGTCTTCCTTTCTTGGGGTAAGCATGCGCACAGTgaattataaaaatgaataaacataataaaaaagtataaaaaa

Function

symbol description
hoxb8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell population proliferation and posterior lateral line neuromast primordium migration. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural tube; pancreatic system; paraxial mesoderm; and pronephros. Orthologous to human HOXB8 (homeobox B8).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0008283 cell population proliferation biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-108 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell population proliferation and posterior lateral line neuromast primordium migration. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural tube; pancreatic system; paraxial mesoderm; and pronephros. Orthologous to human HOXB8 (homeobox B8).

Ensembl:

ensembl_id ENSDARG00000056027

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049948 True 1817 mRNA 0.45 2 23687909 23690481

Neighbor

gene id symbol gene type direction distance location
XLOC_025304 hoxb9a coding upstream 5473 23677351 ~ 23682436 (+)
XLOC_025303 mir196b coding upstream 14454 23673377 ~ 23673455 (+)
XLOC_025302 hoxb10a coding upstream 16046 23669267 ~ 23671863 (+)
XLOC_025301 NA coding upstream 19712 23665161 ~ 23668197 (+)
XLOC_025300 hoxb13a coding upstream 32075 23654233 ~ 23655834 (+)
XLOC_025306 hoxb7a coding downstream 1366 23691847 ~ 23696208 (+)
XLOC_025307 hoxb3a coding downstream 7516 23697997 ~ 23771945 (+)
XLOC_025308 hoxb6a coding downstream 13223 23703704 ~ 23705746 (+)
XLOC_025309 hoxb5a coding downstream 17210 23707691 ~ 23710095 (+)
XLOC_025310 hoxb4a coding downstream 20358 23710839 ~ 23723982 (+)
XLOC_025429 BX649540.1 misc downstream 6558258 30248739 ~ 30249036 (+)
XLOC_025299 NA non-coding upstream 71108 23604478 ~ 23616801 (+)
XLOC_025298 NA non-coding upstream 163259 23517959 ~ 23524650 (+)
XLOC_025296 NA non-coding upstream 276388 23406471 ~ 23411521 (+)
XLOC_025311 dre-mir-10c non-coding downstream 30170 23720651 ~ 23720745 (+)
XLOC_025313 NA non-coding downstream 239965 23930446 ~ 23967966 (+)
XLOC_025316 dre-mir-152 non-coding downstream 405476 24095957 ~ 24096036 (+)
XLOC_025317 NA non-coding downstream 430720 24121201 ~ 24133485 (+)
XLOC_025319 CR790362.1 non-coding downstream 471388 24161869 ~ 24184426 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01684215_01687260 HOXB8AB, HOXB8, HOXB8A, HOXB8AA coding CI01000034 null 1684177 ~ 1687260 (-)
eurasian perch (Perca fluviatilis) G159723 NA non-coding NC_053126.1 CM020923.1 32030089 ~ 32031028 (+)
tiger barb (Puntius tetrazona) G146513 NA non-coding NC_056719.1 CM032088.1 14176177 ~ 14176498 (+)