XLOC_025313


Basic Information

Item Value
gene id XLOC_025313
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23930446 ~ 23967966 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052663
CGCTAATTTGCACATGCCcaaaaacatcatcatcattagcTTGAGACAGATAGGAAAGACTGCAGCACGATGCTAATAGATTTAAACAGCACAGCGCGGAGAAAGTTTGAGGTGCTTACTGTCAGAGAATGAGCCCCCTGCTGTTCAAGCGCGAGCGGAATTACAGGGTCCAGCTCTCGAGAGGCAACTGAAAGCAGAATTGTACCAAAGATATATGACCTGCTCCCTTTTGTGAAGCGTTTGTGAAGGGTCAGGCCGTATGACGCTGATATTCAGACACAGCCGTGGACATGGTGAACACTCGCTTCTCTGAATGGCATTAGAGCTGATAAGAGCACGGCTCAATGACTGACAGTGTTTTACTGGGTTAGCTTGATGCATGGTACCATGGAGAGCAACAATCTTCAGCTGAGATCACATTTAAGGGAAAAACAATGCATAAAACGTAGCTGTTGCCATCATTGATGTCAAAAAGGATTAGGGAATGCTGCCTATTGACAAGCTAGATGACTTAAATGTTCTTGAAGATGACATGGTGATGCCTTCAAAACCCTGGTTTAGAGCACTGACTCTGGTTTTTGAGCGGTTTTATGCCCTTGACAAACTACTTCAATAAACAGACTTTTCATCtccttaaatttgtgaaaaaggTAACGttggcaattattattattattaattatcctAAAATACCTCCTTTTTATGTAATTTCTTGTTTACACGTCAGATTTTGCTTTATGTTCATGTTCATGTAAtagaacactgtaaaacccaataagttatggTAACaagccatttgaggaaactgattgcaatactgtaaaacccaaaacgttaaggtaactcaaaccatttgaggaaacagattgcaacaaaccatttaagttcaaaaatgaatcctaataagtactgtgaacttactcgaTTTGAGAAAAATAAGCAATTTGAGCACCgtaaaacctaataaatgaagacaactcaaaccaactgagtactgtaaaacccaataaggtaaagtaaggcaactcaaatcgtttgaggaaaccaattaaaacaaaccatttgagtcaaAACaaataatctatatgagtactgtgaacttactccatttaggttgaagtaatgaggtattgaATTAACTGGTTTCCTTCAACACAGAgttcaaaacacatttcaaatgagtagaattaacttttagtcaactgagttaactacacttattttatttgataaagttgactgttgggttttactgtgAATCAATTACATCCAAATTGCATAGCTACTAAAATGGTTTGAGGAAACGGACTGCAGCACACCATTTTGGTTGACTAACTATACTCATGCGAGTTCAGCCAACCATTTGCTGCAATTGGTTCCCTCAAACCGTTTGAGTAGCTATACAGTTGTTTGGACTTGATTAGTTTGTTAACTCAACTCAAACAGATAATCTTAACTTAACCTAAAAAGTTTAAGTTACTAGTACTCAATGTTTGATGTCAACTGAAATACTAATTGGCAATTGGTTTCCTTAAATATTTTGAGTTAGCTTAtctggttttacagtgtatgattatCATAACATTGGCAACAACAGCATAGATGTTTCATATATTAATAAGATTAAGTAAATGCATGTCTATATATCCAATAATTTAGGTTCAAATATGATTGGATgcaaagtcatgtgatttttggAATCTTTGTGCGAAATTACTAAAagctcaaactaaaataaaaatgctttgaaGCCATTTTTGTCAGTGTTTACATTGTAGTAGTCCAGTTCTGTAGCTTAGGATAAAATATCAACAATGCAAAAAATCTGTTTGCATGAGAAATAACTGGGTTTGCTTAATAAAAAGAGTAGCAAATATTATCAGTTTGAGAGCACAGATAATCACACAGGCTGTACTGTAGAAACCGATTCTCCATCCAAACCATGCACACCCTCTTCTAGTCAGAGACCATGGTTCCGATTAGGTCACGAGTAAAGCCCGAAGGTCAGAGGTTAGTCAGGTCACACTGCTCTGTATCTACTAACACACATGCCTCTCCTTCAATAGACACATCAAGGAGTCTTCCATTTGCTCCGTGATGTCAGGTCTCTCTGATCTCCATCATGTTGGACATTTTGTGTTTGTTCTCGATATCTACTGATGTCTTTTAAGTACAAGTCCAATCCCTCAATCAGATGCCAAAAGCAAATGTTACTAATATAAATATGCTGTTATACTCTCGAAAAAAATGACTGTAATGTTAATTTCCTTTAGTAATTTGTGTTCTATATTTGAGTAACATTTTCAGCAAGTCTAGAAACAGTAGTGAACACCAGGATTTTGTAAAAGATTTACTTTAATGTGATGACTAACAGTGGGCATTAATGGCTACGGGTTTTCCCAATACAAATGAGGCTTAGATCTAGGCTGGGTAACATAATTTCATAATAACTTAACAAGCtaatatacatatacactgcaaaaaatgctgtgattttaactgcaatttttgtttttattctacaGTACAACTCTGTAACCTCATTACAGTTTCTTGTTTGTATGATAAATAAAATTGACTATTCCCAGA
>TCONS_00049968
TTTATTTTATAGTGTCCAGCAGAACAGAAAAAGAGAACCGAAGGCCAGGCACACTTGAAGTCGTGATTTCCGCGAGGAGGGGGCTTGAGAGGGGCGCTGAGAGACCGCAGATGAAGGGACTTGATGTCAAGGATTTTTCCCTCTCCCTACCGGGAAATTGAACAACACCCGCGAGCGTCGAGCGACTGCTTGAAAACTTTCCGCACGTCTCGGGTCTGATGCGCGCGCCATCCCGTTCTGTTCTGATTGCGgctgaaaaaaaagagaagagcGCATAAATCGATCACCTTGTACTCGTTCCCGAGGTCGCGTTTCAGCGGAGAAGCAAAGTGCTTTTGTTGTTTGGGTCCAGCTCTCGAGAGGCAACTGAAAGCAGAATTGTACCAAAGATATATGACCTGCTCCCTTTTGTGAAGCGTTTGTGAAGGGTCAGGCCGTATGACGCTGATATTCAGACACAGCCGTGGACATGGTGAACACTCGCTTCTCTGAATGGCATTAGAGCTGATAAGAGCACGGCTCAATGACTGACAGTGTTTTACTGGGTTAGCTTGATGCATGGTACCATGGAGAGCAACAATCTTCAGCTGAGATCACATTTAAGGGAAAAACAATGCATAAAACGTAGCTGTTGCCATCATTGATGTCAAAAAGGATTAGGGAATGCTGCCTATTGACAAGCTAGATGACTTAAATGTTCTTGAAGATGACATGGTGATGCCTTCAAAACCCTGGTTTAGAGCACTGACTCTGGTTTTTGAGCGGTTTTATGCCCTTGACAAACTACTTCAATAAACAGACTTTTCATCtccttaaatttgtgaaaaaggTAACGttggcaattattattattattaattatcctAAAATACCTCCTTTTTATGTAATTTCTTGTTTACACGTCAGATTTTGCTTTATGTTCATGTTCATGTAAtagaacactgtaaaacccaataagttatggTAACaagccatttgaggaaactgattgcaatactgtaaaacccaaaacgttaaggtaactcaaaccatttgaggaaacagattgcaacaaaccatttaagttcaaaaatgaatcctaataagtactgtgaacttactcgaTTTGAGAAAAATAAGCAATTTGAGCACCgtaaaacctaataaatgaagacaactcaaaccaactgagtactgtaaaacccaataaggtaaagtaaggcaactcaaatcgtttgaggaaaccaattaaaacaaaccatttgagtcaaAACaaataatctatatgagtactgtgaacttactccatttaggttgaagtaatgaggtattgaATTAACTGGTTTCCTTCAACACAGAgttcaaaacacatttcaaatgagtagaattaacttttagtcaactgagttaactacacttattttatttgataaagttgactgttgggttttactgtgAATCAATTACATCCAAATTGCATAGCTACTAAAATGGTTTGAGGAAACGGACTGCAGCACACCATTTTGGTTGACTAACTATACTCATGCGAGTTCAGCCAACCATTTGCTGCAATTGGTTCCCTCAAACCGTTTGAGTAGCTATACAGTTGTTTGGACTTGATTAGTTTGTTAACTCAACTCAAACAGATAATCTTAACTTAACCTAAAAAGTTTAAGTTACTAGTACTCAATGTTTGATGTCAACTGAAATACTAATTGGCAATTGGTTTCCTTAAATATTTTGAGTTAGCTTAtctggttttacagtgtatgattatCATAACATTGGCAACAACAGCATAGATGTTTCATATATTAATAAGATTAAGTAAATGCATGTCTATATATCCAATAATTTAGGTTCAAATATGATTGGATgcaaagtcatgtgatttttggAATCTTTGTGCGAAATTACTAAAagctcaaactaaaataaaaatgctttgaaGCCATTTTTGTCAGTGTTTACATTGTAGTAGTCCAGTTCTGTAGCTTAGGATAAAATATCAACAATGCAAAAAATCTGTTTGCATGAGAAATAACTGGGTTTGCTTAATAAAAAGAGTAGCAAATATTATCAGTTTGAGAGCACAGATAATCACACAGGCTGTACTGTAGAAACCGATTCTCCATCCAAACCATGCACACCCTCTTCTAGTCAGAGACCATGGTTCCGATTAGGTCACGAGTAAAGCCCGAAGGTCAGAGGTTAGTCAGGTCACACTGCTCTGTATCTACTAACACACATGCCTCTCCTTCAATAGACACATCAAGGAGTCTTCCATTTGCTCCGTGATGTCAGGTCTCTCTGATCTCCATCATGTTGGACATTTTGTGTTTGTTCTCGATATCTACTGATGTCTTTTAAGTACAAGTCCAATCCCTCAATCAGATGCCAAAAGCAAATGTTACTAATATAAATATGCTGTTATACTCTCGAAAAAAATGACTGTAATGTTAATTTCCTTTAGTAATTTGTGTTCTATATTTGAGTAACATTTTCAGCAAGTCTAGAAACAGTAGTGAACACCAGGATTTTGTAAAAGATTTACTTTAATGTGATGACTAACAGTGGGCATTAATGGCTACGGGTTTTCCCAATACAAATGAGGCTTAGATCTAGGCTGGGTAACATAATTTCATAATAACTTAACAAGCtaatatacatatacactgcaaaaaatgctgtgattttaactgcaatttttgtttttattctacaGTACAACTCTGTAACCTCATTACAGTTTCTTGTTTGTATGATAAATAAAATTGACTATTCCCAGA
>TCONS_00052664
CACACTTGAAGTCGTGATTTCCGCGAGGAGGGGGCTTGAGAGGGGCGCTGAGAGACCGCAGATGAAGGGACTTGATGTCAAGGATTTTTCCCTCTCCCTACCGGGAAATTGAACAACACCCGCGAGCGTCGAGCGACTGCTTGAAAACTTTCCGCACGTCTCGGGTCTGATGCGCGCGCCATCCCGTTCTGTTCTGATTGCGgctgaaaaaaaagagaagagcGCATAAATCGATCACCTTGTACTCGTTCCCGAGGTCGCGTTTCAGCGGAGAAGCAAAGTGCTTTTGTTGTTTGGGTCCAGCTCTCGAGAGGCAACTGAAAGCAGAATTGTACCAAAGATATATGACCTGCTCCCTTTTGTGAAGCGTTTGTGAAGGGTCAGGCCGTATGACGCTGATATTCAGACACAGCCGTGGACATGGTGAACACTCGCTTCTCTGAATGGCATTAGAGCTGATAAGAGCACGGCTCAATGACTGACAGTGTTTTACTGGGTTAGCTTGATGCATGGTACCATGGAGAGCAACAATCTTCAGCTGAGATCACATTTAAGGGGCCAATAAAGGTGTCTGTCATAAATTGTTTGGAGATCCTG
>TCONS_00052665
CGAGGAGGGGGCTTGAGAGGGGCGCTGAGAGACCGCAGATGAAGGGACTTGATGTCAAGGATTTTTCCCTCTCCCTACCGGGAAATTGAACAACACCCGCGAGCGTCGAGCGACTGCTTGAAAACTTTCCGCACGTCTCGGGTCTGATGCGCGCGCCATCCCGTTCTGTTCTGATTGCGgctgaaaaaaaagagaagagcGCATAAATCGATCACCTTGTACTCGTTCCCGAGGTCGCGTTTCAGCGGAGAAGCAAAGTGCTTTTGTTGTTTGGGTCCAGCTCTCGAGAGGCAACTGAAAGCAGAATTGTACCAAAGATATATGACCTGCTCCCTTTTGTGAAGCGTTTGTGAAGGGTCAGGCCGTATGACGCTGATATTCAGACACAGCCGTGGACATGGTGAACACTCGCTTCTCTGAATGGCATTAGAGCTGATAAGAGCACGGCTCAATGACTGACAGTGTTTTACTGGGTTAGCTTGATGCATGGTACCATGGAGAGCAACAATCTTCAGCTGAGATCACATTTAAGgagccaatcatcaatcactaTAGACTGACATTTCTTCGGGGGAGAAGCTCAGACCAGAGGGGAAAAATAAAATCTCTACTCGAGGTTCGAACTCACTCCGCTGTGAGCACCGTTGTTCCTTAATGGCGCACTGACCACTACGTGCTCTGAAACGTCTGTGTAATGATATGCAATGGTTTATGGCCATGGAACtgcacaaaaatgtataaaacag

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052663 False 2589 lncRNA 0.36 3 23930446 23967966
TCONS_00049968 False 2768 lncRNA 0.37 3 23934892 23967966
TCONS_00052664 False 597 lncRNA 0.50 3 23934941 23965038
TCONS_00052665 True 746 lncRNA 0.49 3 23934964 23962671

Neighbor

gene id symbol gene type direction distance location
XLOC_025307 hoxb3a coding upstream 158501 23697997 ~ 23771945 (+)
XLOC_025312 hoxb2a coding upstream 175615 23752150 ~ 23754831 (+)
XLOC_025310 hoxb4a coding upstream 206464 23710839 ~ 23723982 (+)
XLOC_025311 dre-mir-10c coding upstream 209701 23720651 ~ 23720745 (+)
XLOC_025309 hoxb5a coding upstream 220351 23707691 ~ 23710095 (+)
XLOC_025314 cbx1a coding downstream 82077 24050043 ~ 24071582 (+)
XLOC_025315 copz2 coding downstream 126615 24094581 ~ 24111412 (+)
XLOC_025316 dre-mir-152 coding downstream 127991 24095957 ~ 24096036 (+)
XLOC_025317 NA coding downstream 153235 24121201 ~ 24133485 (+)
XLOC_025318 si:ch211-246i5.5 coding downstream 166452 24134418 ~ 24145250 (+)
XLOC_025429 BX649540.1 misc downstream 6280773 30248739 ~ 30249036 (+)
XLOC_025303 mir196b non-coding upstream 256991 23673377 ~ 23673455 (+)
XLOC_025301 NA non-coding upstream 262249 23665161 ~ 23668197 (+)
XLOC_025299 NA non-coding upstream 313645 23604478 ~ 23616801 (+)
XLOC_025298 NA non-coding upstream 405796 23517959 ~ 23524650 (+)
XLOC_025319 CR790362.1 non-coding downstream 193903 24161869 ~ 24184426 (+)
XLOC_025323 NA non-coding downstream 249222 24217188 ~ 24217511 (+)
XLOC_025327 NA non-coding downstream 470631 24438597 ~ 24452013 (+)

Expression


Co-expression Network