XLOC_025323


Basic Information

Item Value
gene id XLOC_025323
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24217188 ~ 24217511 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052338
aaatttaaaaatcaacgtCACTTCTACAAGTTGTGATATTGCAAGTGACCAGTAATCAATGCTGGTTTGTCATAATTATTTGAGAGTGTGCCTATCTTTGTCACTTGACTTAATTATTTATGAGATCAGATATTTTAGACATCTTAATGACAGAATTCACAATGGCATCCACAGATTAAAGTAATAAGTTACCTCAAAGTTTAAATTTGctggcagcacggtggtgcagtgggtatcactgttgcctcacagccccggcttggtcagttggcatttctgtgcggagtttgcatgttttccataTGTTCaggttggtttcctctg

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0003203 endocardial cushion morphogenesis biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0061053 somite development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052338 True 324 lncRNA 0.39 1 24217188 24217511

Neighbor

gene id symbol gene type direction distance location
XLOC_025321 atf4b coding upstream 16369 24197934 ~ 24200819 (+)
XLOC_025320 prr15la coding upstream 19918 24189804 ~ 24197270 (+)
XLOC_025319 CR790362.1 coding upstream 32762 24161869 ~ 24184426 (+)
XLOC_025318 si:ch211-246i5.5 coding upstream 71938 24134418 ~ 24145250 (+)
XLOC_025317 NA coding upstream 83703 24121201 ~ 24133485 (+)
XLOC_025324 zgc:123244 coding downstream 2843 24220354 ~ 24226028 (+)
XLOC_025325 pdgfbb coding downstream 58086 24275597 ~ 24297419 (+)
XLOC_025326 pvalb6 coding downstream 79971 24297482 ~ 24434905 (+)
XLOC_025327 NA coding downstream 221086 24438597 ~ 24452013 (+)
XLOC_025328 cbx6b coding downstream 240693 24458204 ~ 24464794 (+)
XLOC_025429 BX649540.1 misc downstream 6031228 30248739 ~ 30249036 (+)
XLOC_025316 dre-mir-152 non-coding upstream 121152 24095957 ~ 24096036 (+)
XLOC_025313 NA non-coding upstream 249222 23930446 ~ 23967966 (+)
XLOC_025311 dre-mir-10c non-coding upstream 496443 23720651 ~ 23720745 (+)
XLOC_025342 NA non-coding downstream 713069 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 838465 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 1091199 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1355267 25572778 ~ 25573533 (+)

Expression


Co-expression Network