XLOC_025340 (slc25a17)


Basic Information

Item Value
gene id XLOC_025340
gene name slc25a17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24681855 ~ 24692363 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050014
ATTGTTGACAGGGAAGTCTCATGCAGCTACAAATCTGAACACAGATATCGTGTTATTTGATTTTTTACCTAAATATATAAATCTTCCAGTGTCCAAGGATGGGATCTACAGACATGAAACTCATGGATGTCTTTTCGTATGAGAGTCTTGTACATGCAGTCGCCGGTGCGATGGGCAGTGTTACAGCAATGACTGTTTTCTTTCCCCTTGACACCGCTCGGCTCAGGCTGCAAGTTGATGAGAAGCGGAAAGCCAAATCAACCCCAGCCATTCTTTCAGAGATCATCAAGGAGGAGGGTctGTTGGCTCCATATAGAGGTTGGTTTCCAGTGATCTGCAGCCTCTGTTGCTCAAACTTCGTTTACTTCTACTGTTTTCATAGTCTGAAGGCCACTTGGCTACAAGGTCAAAGATCAACAGCAGGGCGGGACCTTATTATTGGCATTGCTGCAGGTGTGGTGAATGTCCTTGTGACCACTCCACTCTGGGTAGTCAATACCAGACTGAAACTACAGGGGGCGAAGTTCAGAAATGAGGACATACAGCCCACACACTACAACGGAATCAAGGATGCTTTTGTGCAGATCATGCGTCAAGAAGGAGTAGGTGCTTTATGGAACGGGACGTTTCCCTCCCTGTTGCTGGTGCTTAATCCAGCCGTGCAGTTCATGATCTACGAGGGTCTGAAGAGGCAGATCCTGAGGGGCGTCCACAGAGAGCTCTCCTCAGTGGAAGTGTTTCTTATTGGAGCCGTCGCTAAGGCCGTAGCAACCACCATAACCTACCCACTCAGACAGTTCAGTCTGTTCTACGGTTTGGCCAGCACGGGCAGCCTGCAGGTCAGTCCAGACTCCTGAACAGCCTGAGATCCGTCATGTATCTGCTCATCAACAGAGTCAGGAAGTGGGGCATTCTGGGATTGTTTAAAGGCCTGGAGGCAAAGCTGCTTCAGACAGTCCTCACCGCTGCGCTGATGTTCTTACTGTATGAGAAGATCGCAAGCACCACCTTTAGGGTCATGGGGGTCAAACGACCAATGACCTCCCATTGATTTCCAACAGGGCGATTATTGGGAAACTGGTATGAGTAGTAATCAAATCATGTTTAGTGTTTTATATGTGAAAGGACTATTCAGTGCCAGTCAGAAGTTATATACTGTACAATACACGCTGACTACGTAtcaattttggtttgttttgttaaattatatGGTTAATATGACTGGATAGTGAAGGAAACTCAGCCAAAAAGTGCCAAGAAAGATGAAATGATCAAAAGAGCTGCTGTGCAAGTGAGAAACATTTAGAATTTTGAAAAGTATGAActcaatttaaaacaaataacaaatgttaCTAATTCAAGTACTGAAATTAATAACTGCTCCATAAAAAGTTAACTTAACTTAAGTCcattaagttaaggtaactcaaaccattttaagaaacccgattgcaacaaaccatttaagtttaaaaaatgaatcctattgagtactgtgaacataatccatttgagtaaaggaagcagtttgagcacagtaaaacccaataaatgaagagaactcaaataaGTCTAATAAGATACCTAATTAGTTAAGGCAACTCGAACGGTtagaggaaactgattgctacaaaccatttgagttaaaaactaatctatatgagtactgtgaacttactccatttaagttgaagtaatgagcaATTTAATTAACtcgttaccttcaacactgagttcaaaactcttttcaaagtAGTAGAATTAACctttagtcaattttgagttaactacactcacttgataaagttgactgttgggttttactgtgtaaTAAGGAATTATATGAAGCAAATCAATGTAGAAGTATACAGTTGAGGGccaaatgattagccctcctgtgaacaTTTtgattcttttacaaatatttatcaaatgatgtttcacagagcaaagGATTTTTccatttcctataatattcttttaaaataataaaacatttcctataatataatttttttcttatagagaaaatgttatttcttttagtttgactgcagttttAAAAAGCgttaaaactaattttaaggtcaaaattattagcccagaataattttcagaaatgatcatttttattttcagttaccTATAGACTtatctaattaacctaatttatctagttgagcctttaatttgcactttaagctcaataattattttttaattaattagtaaaataCCATGTGCTGTCGTCAGGGCAAAGACAATTTAAATGAGTTATTATGAACTAGTTATTCAAATTATTGTTTAGAAATTAGTTGAATTTTTTAGTTAAGGAGCACCTAGGAgatatttttaagtaattaaaatttaataggAGGGCTAACAGTTtttactttaagtgtgtgtgtgtgtgcgtgtgtgcgtgcgttcgtgtctattaataaaacaatattaatacatataaataccaaaataacacttattttatttattacaaattggttactttaaaaatgaacaatatagaatacttttgacatttgaaaatgttttagtTGTACATAATTCTATTTTCCATAGTAATTTTTTACTCTTGctcataaatgatcataaaatcataaaatatctTTCTTTTGTACTCTAGGAAATAATATagataaaacaaaatagtttaagaATTCACATGTTTGTatccatttttaatttaaaatatttcaattctGTTTTTTGAAATGTGGAAAAAGCAGCGACTGAGTTCAAACATTTGACTGATAGTGTTTCAATACAAATGAGTGATTACAAAtaggatatacacacacacacttactaaaATCAAATCAACTCAATAAATTAACACCGTTACATTAAGAGGTCAATAGCTTGGTCACGATCTAGTGTAGCTTTTTAATAAAGCGTTTGATTAAAAAGTATGTGCTAACATGGTTTTAGCAGAACTAAACGTGTTTACAAAGtgtcaaaaagaaaatcaatccTGTAAAGGATCTGCTTTTGTGCTgtcaacaaaaaagaaacaacttCCAGACTGGTTTATCTGGTTGTGTGTAAGTGATACTTGATTTTACTTGACAAACACAAAGCCGCTGAGTCTTTAGTGGACCTTTAACCTAAAAAGTTTACAGTCTGATCTTTAAAATAGCTTCCTTCCATCATTCGTGATTGGGACTTGTGGAATAACCTGTTTATGAGCAGCTTTGGCCAGAATTAACACCTGAACTGTGAATGTTACACAAGACACAGAGGCTTATGGGTATcatttactgtatatacatatttcATTGTCCACACTGCACTAATGTAATGTAAGAATCTTTTGCACGGAATTAGctatttatgaatgtaaaatgttttttcttaatTGTCAGAATGGTTTTATTAACACTGAATAATGCAATTGTGAATGATGATTCAAACTATAAATCATTTTGTTATATTGATCaa

Function

symbol description
slc25a17 Predicted to enable nucleotide transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of peroxisomal membrane. Is expressed in gut; head; and swim bladder. Orthologous to human SLC25A17 (solute carrier family 25 member 17).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051724 NAD transmembrane transporter activity molecular_function
GO:0015217 ADP transmembrane transporter activity molecular_function
GO:0080122 AMP transmembrane transporter activity molecular_function
GO:0015228 coenzyme A transmembrane transporter activity molecular_function
GO:0015230 FAD transmembrane transporter activity molecular_function
GO:0044610 FMN transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG:

id description
ko04146 Peroxisome
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070620-4 Predicted to enable nucleotide transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of peroxisomal membrane. Is expressed in gut; head; and swim bladder. Orthologous to human SLC25A17 (solute carrier family 25 member 17).

Ensembl:

ensembl_id ENSDARG00000061684

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050014 True 3459 mRNA 0.35 9 24681855 24692363

Neighbor

gene id symbol gene type direction distance location
XLOC_025339 zmp:0000000912 coding upstream 21527 24655643 ~ 24660328 (+)
XLOC_025338 zgc:113411 coding upstream 31961 24640946 ~ 24649894 (+)
XLOC_025337 si:dkey-68o6.8 coding upstream 42934 24634481 ~ 24638921 (+)
XLOC_025336 zgc:171506 coding upstream 54053 24612191 ~ 24627802 (+)
XLOC_025335 si:dkey-68o6.6 coding upstream 71851 24603923 ~ 24610004 (+)
XLOC_025341 mrtfaa coding downstream 16322 24708685 ~ 24765127 (+)
XLOC_025342 NA coding downstream 238217 24930580 ~ 24936255 (+)
XLOC_025343 cbx7a coding downstream 293782 24986145 ~ 24994617 (+)
XLOC_025344 CR936416.1 coding downstream 363613 25055976 ~ 25060120 (+)
XLOC_025345 st13 coding downstream 395242 25087605 ~ 25100726 (+)
XLOC_025429 BX649540.1 misc downstream 5556376 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 229842 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 464344 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 497429 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 548370 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 585819 24095957 ~ 24096036 (+)
XLOC_025351 NA non-coding downstream 616347 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 880415 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 911305 25603668 ~ 25624618 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00934363_00941644 SLC25A17 coding CI01000034 null 932793 ~ 941644 (-)