XLOC_025346 (napsa)


Basic Information

Item Value
gene id XLOC_025346
gene name napsa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25121156 ~ 25133244 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050020
ACAGTAAAACTGATCTTCTTGCTACTCACAGTAGAACTCGTTTATCATATCAACAGCTGCATTTAATTGAATTGATGTAACTCAACCAGTGATACCACATTTCAGCACATTCCATGAAGAAGCGGGTGTGTCAAACTGAACTTTGTTGATTTGCGCTTCAACCAAGTACAACGGAAATCCCCGAAGTTCCACGAAGCTCTCCGAAATACACTTGCGGATGTATGAGTTGCGCACAAGGGGTGGCGGTACGAGTAAAATTTCAGAATTGCAATAGCAAGTCATATAAGGATCAGAAAAGAAGTACAACTATTCGGTTCCTTTAAAGATCAGAAAATGAACGGCTTTCACCTATTCGCGTTTTTAATAGGGCTGTTAATTGCGGACAGCCAAGCAATAATCAGAATTCCTCTGCACAAGATGCGTACTGTGCGCCGCATGTTGGCAGACAATGGCAAGACTATCGATGAGATCAAATCTCTGGCTAAAATGAAGGCGAAATATTCTGATGGCACATTTACCAATCAAGGCTCCGTCACAATACCAGCACCAACAACAACACAACTCCCACCACCTGTGGAGAAACTCACCAACTTCATGGATGCCCAGTATTATGGCATGATCAGTATTGGTACGCCTCCTCAGGACTTCAGTGTGCTGTTTGACACCGGATCATCAAACCTCTGGGTTCCATCTATCCATTGCGCCTTCCTGGACATAGCATGCTGGTTGCACCGTCGCTATAACTCTAAGAAGTCAAGCACGTACGTTCAGAATGGCACTGAGTTCTCCATTCAGTATGGCAGAGGGAGTCTCTCTGGCTTCATCAGTCAGGATACAGTCAATttgGCAGGGCTGAATGTGACAGGCCAGCAGTTTGCAGAGGCGGTAAAACAGCCTGGGATTGTGTTCGCGGTGGCACGCTTTGATGGAGTCCTGGGCATGGCGTACCCCGCCATTTCTGTAGATAGGGTCACGCCTGTGTTTGACACAGCCATGGCTGCCAAAATCTTGCCCCAGAATATCTTCTCTTTCTATATCAACCGGGACCCGGCCGGTGATGTTGGAGGCGAGCTGATGCTGGGAGGTTTTGACCAGCAGTATTTCAACGGCGATCTGCATTATGTCAACGTCACGCGAAAAGCCTACTGGCAGATAAAAATGGATGAAGTCCAGGTTGGTTCCACTCTTACCCTTTGCAAAAGTGGATGCCAGGCTATTGTTGATACTGGAACATCAATGATCACGGGGCCCGTTCAGGAGGTGCGGGCACTGCAGAAAGCCATCGGAGCCATTCCACTGCTCATGGGGGAGTACTGGATCGACTGTAAGAAGATTCCTACACTTCCAGTTGTTTCCTTTAGCCTTGGAGGAAAGATGTTCAACTTAACTGGACAGGAGTATGTCATGAAGGTGAGTCACATGGGTATGAATGTTTGTCTGTCGGGCTTCATGGCGATGGATATCCCTCCTCCTGCTGGGCCGCTGTGGATTCTGGGAGACGTGTTCATCGGCCGCTACTACACTGTGTTCGACAGGGATCAGGACCGTGTAGGCTTCGCTCCAGCTAAATGAAAAGAGTCAATCACATTATAGTGCCTAAATAATCATTAGGAATAAAAAAATAcgagaattctgtcatttattgttTCGATTCCCTAAGACTTTTAATTTCCTTcagaacaaaaatgaaaaaaatgaaactgAAGTTGTGTTTGCCAAAAACCATCCAAGCTTCAGAATATTCTTGAAGAGATCAATAAGCAAATCCAAATGGATTAAGTGATTTAATTGAGGTATTCTAGAGAGATGTAACAGACTGAATACCTGGTTAAAGTTAACAGCGTTATAACTGGGTGAGTATTCGTTTCAGATGACATTGCTAATACAAGTAGATGTTCTTTCATTAATGTTCTAAATGATCAGAAGATAATTTTGCTCaaatttgtttacccaattttaataaaaatttcttaatttgtgttttaaagataaaCAAACGTCTTAAAGAGTGAGAAACAATGAGAAATGATTTATTTTGGAGCGAAGTAACCCTTTAAGTTTGAAATCCACATCTTTAACATGAGGAAATGAACAAATACCTGATATGAGAGAAACATTTATCCACGTCTGAAATTCAAAGCAGAGGAAATGAGAATCTTGTTTAGCTGAGGGCTCTCTGTGATTCCctttaaaacctgcttttattttgcACTGTTTACATAGTCAAATCtatgcagttttattttatacatatgcTATTCATTATTTTGTAGGATTAAGGTTCTGGTAGATCAATTGTTGTGGTACTTTTGGTTTTCTTTGGACAGCCGACTTTTATATTTGTCTGTAAACCACTTGGATGAAATTGACATTATAGTATTATAGTGTATTATATTGAGTTGATTGTATTAATAAGAATGGTATTTCTGTTAAAGCTGAGCTTCTTAATAACTGTATAGGAACTGTAGCCAAATATCTGCCAAACctaaaattaaagatttttttagtttgtt
>TCONS_00050021
CCATTTGTAGAATAGGGAGGGATTAATTACGTTCAACTTGGCATCCAAAAAGTcagtcatttgtgtgtgtgtgtgtttgtgtgtgtagttgGCAGGGCTGAATGTGACAGGCCAGCAGTTTGCAGAGGCGGTAAAACAGCCTGGGATTGTGTTCGCGGTGGCACGCTTTGATGGAGTCCTGGGCATGGCGTACCCCGCCATTTCTGTAGATAGGGTCACGCCTGTGTTTGACACAGCCATGGCTGCCAAAATCTTGCCCCAGAATATCTTCTCTTTCTATATCAACCGGGACCCGGCCGGTGATGTTGGAGGCGAGCTGATGCTGGGAGGTTTTGACCAGCAGTATTTCAACGGCGATCTGCATTATGTCAACGTCACGCGAAAAGCCTACTGGCAGATAAAAATGGATGAAGTCCAGGTTGGTTCCACTCTTACCCTTTGCAAAAGTGGATGCCAGGCTATTGTTGATACTGGAACATCAATGATCACGGGGCCCGTTCAGGAGGTGCGGGCACTGCAGAAAGCCATCGGAGCCATTCCACTGCTCATGGGGGAGTACTGGATCGACTGTAAGAAGATTCCTACACTTCCAGTTGTTTCCTTTAGCCTTGGAGGAAAGATGTTCAACTTAACTGGACAGGAGTATGTCATGAAGGTGAGTCACATGGGTATGAATGTTTGTCTGTCGGGCTTCATGGCGATGGATATCCCTCCTCCTGCTGGGCCGCTGTGGATTCTGGGAGAC

Function

symbol description
napsa Predicted to enable aspartic-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be active in lysosome. Orthologous to human NAPSA (napsin A aspartic peptidase).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005764 lysosome cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-8690 Predicted to enable aspartic-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be active in lysosome. Orthologous to human NAPSA (napsin A aspartic peptidase).

Ensembl:

ensembl_id ENSDARG00000009313

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050020 False 2513 mRNA 0.41 9 25121156 25133244
TCONS_00050021 True 745 processed_transcript 0.50 5 25126456 25132231

Neighbor

gene id symbol gene type direction distance location
XLOC_025345 st13 coding upstream 20430 25087605 ~ 25100726 (+)
XLOC_025344 CR936416.1 coding upstream 61036 25055976 ~ 25060120 (+)
XLOC_025343 cbx7a coding upstream 126539 24986145 ~ 24994617 (+)
XLOC_025342 NA coding upstream 184901 24930580 ~ 24936255 (+)
XLOC_025341 mrtfaa coding upstream 356029 24708685 ~ 24765127 (+)
XLOC_025347 si:ch211-256m1.8 coding downstream 20834 25154078 ~ 25165189 (+)
XLOC_025348 TST coding downstream 33561 25166805 ~ 25169831 (+)
XLOC_025349 il2rb coding downstream 58122 25191366 ~ 25209006 (+)
XLOC_025350 c1qtnf6a coding downstream 83546 25216790 ~ 25222662 (+)
XLOC_025351 NA coding downstream 175466 25308710 ~ 25308964 (+)
XLOC_025429 BX649540.1 misc downstream 5115495 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 669143 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 903645 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 936730 24161869 ~ 24184426 (+)
XLOC_025353 NA non-coding downstream 439534 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 470424 25603668 ~ 25624618 (+)
XLOC_025355 NA non-coding downstream 511987 25645231 ~ 25648375 (+)
XLOC_025356 NA non-coding downstream 567347 25700591 ~ 25720214 (+)

Expression


Co-expression Network