XLOC_025347 (si:ch211-256m1.8)


Basic Information

Item Value
gene id XLOC_025347
gene name si:ch211-256m1.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25154078 ~ 25165189 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050022
CTTCAACAAAAGCTTGTTGCATTCTAGCTCTCATCGCATTTACTAGTCCACATATACTTTTGGAAGTCTTTACTGCCCTGAGGATGGAGCTACCTAATTATCCCATTCCAGATCTGGATGTTACTCTCCAGGAGGCGAGCCGGGTACTTCAGCTCACCTTAAACCCTGAGCAGTACCAACACTATAAAACTGCTCTGCTTCAGCAAAGAGATGCACTTCAAGAAGTCCAAGAACACCTAAAGAATCATGCCTCTGGACGTGAAAACTGGGTGACTGAAGAATTCAAAAAGCGGTTGCTTTCCTGTTATGATCCCCTGCCCACTTCCACTGCTATTCCTTCTGTCTTGCCCTCTTCTAAGCTAAAGGGAGATCTGGCACAGATAGAGCGGGCTACAGCATTGCTGTGGGCAGTTGCTAAGCTGTACAGTGAACCATGTCTGGTGGAAGGGGATGTGGCAACTGAGAGAACGCAACAGTCACAAGTTTTTGGGGCTAGTCGCTTGCCAGGCAAGAATCAGGATGAACTAAAGACATATCCAGACAGCCTTCACACCATATTGACCTGTCGAGAGGGTATATTCCCAATTCAAATTTTATGGAAGCCAAGTTCAGGGGAACCTGTTTCTCCTTTACCTCTCAATGACATCCACAGCCAACTGGTCCATGCAATGAGTCACCAAGCAGCAACCCCTGAACAAGACCCATCCATTGTTTGTGGTCTGTCTTCTCTAAATCGTCAAGCCTGGCATTCTGTAAGAATGGACATCTTAAAGGCAGGCGGAGAAGCTGCAGCTTCACTTGAAATGATGGAAAGTGCCATTCTCGCTGTTTCCCTGGAAGATAGTCCAGCACCTGCTGATCTTGCAGAAATGCTTAATACCATCCGGCTAGGAGAGAAAGATGGGAAATGTTTACGATACTATGATAAGGTGGTTAACTTGGTGGTGTTTAAAGATGGCCAAGCAGGTATGCTGTTTGAGCACAGTGCCCTGGATGGAATGGTAGCAGGACTTGTTGTTGAACGTCTGTGGCAGCTCTCAGAATCTGAAAACATGGAAATGATAAAAACACAACCCAATGGTTTAGCTCCACTCTCAAAAGCTGGTTCACTTCATCCTAAACCCCTGAATGTGCCACTGGAAGGCATAACTGTGCCAGAAAAGTCTGTTTCGAGCCTTCTACAATCCAGCCAGTCTGTCATGACTTTTGAAGTTTCATCTTACCCAGATGTGTTTACAACCTTGCGGGGTCTCAGAGGTTTATATGATGCATGGATTAATTTTACTTTGCAGCTGTCCTTGAGGCAAACACTGGGGGATGCAGCTATGAACCTTATCATGGTAACACCAACCCACATGCGTCACTTCAAACATGGCCGTTGTGATCCCACATACTCCACAACTATGAAATCTCACCAGCTTGTTATAGCACTGGCATCCTGCATTGGCCCAGACAACATTCCCCAGTACACAAATGAGCTTTTCAGGCTCTTTCACCTAGCCTTTATAGAGCACAAAAACCTCATAAAAGCCACAAAACTAGGCTTTGGTGTAGGGCCTCATCTGGCAGCCCTTCGCAAATCTATGTCTCAAGATAACCCACTCAAAAAGTTTCTTGACCCTTTTGGGTGCCCTTCAATTTACTTGACTGGATCAGATCTGATGGAGGGTGTTGAGTGTGCTGTAGGCAATGTGTATGCTTCAGACCAGCTTGCTGTCACATATCTAGGAAGGAAGGACAAAGTACGTATAGTGCTGAACGGGAAGGGTACATTTGCCAGTGTCCTGGGAAATCTCAGAGAAAGATTTGAGCTGAATCTAAAATTAATCATGCTTTTGGCACTAAGGTACGCCATTGCTGGGCAGATGGGTGCCATTGAATGTCTCCTGCAAGACAATGAAGAAAAACTAGTAAACGGATCTTCAACCGAGGATGAAATTAAAGCTGTGGAGCAAAAAAACTCCAACAAAAACATAAAGCCAGATTTTACTTTGCTGATCCATGGTGGTGCAGGAGAGGAAATGATGCTGAATCAGAAAGTAGTTGAAATCATTGAATTTGCTCTTCAAACAGCTCTAACTCTTGGAGCACAAGTCCTTTCTCATGGAGGTAGTAGTCTGGATGCAGTACAAAAAAGTGTTGTTGCGTTAGAGGACTGTTTCTTATTTAATGCTGGCAAGGGATCAGTATATAATCGAGATGGGGAGCAGGAAATGGAGGCCACAATTGTGGATGGACATGGGAAGAACTCTGGATCTGTGGCTTGTCTGCGAAATGTAAAAAACCCAATAAAAGCAGCCCGTTGTGTTATGGAAAAGAGCGTCCACTCACTACTGATTGGAGAAGGTGCAGAAGAGTTTATAGAAAGTGTTGGAGAGAAAGAAACAACAGTGAAAGCAGACTACTTTGGCACTGACCTACGATTCAAGGAATTAATCATGAAGTCAGGTGATGGTAAGAATAACCATCCTCAAACTGTAGGAGCAGTTGCACTTGATAAGTGGGGCAAGTTAGCAGCAGCCACTTCCACTGGGGGTTTAGTTGGCAAGTGGAAGGGCAGAGTTGGTGACACTGCAATAGTGGGAGCAGGAATATATGCTGATGAAAAACTTGCTGTGACATGTTCAGGTGATGGGGATGTCTTCTTACGCCAGACAGTTGCTCACAAAGTAGCCAGTTTATACAACCTCAAAGGCTACAGTCTCAGACAGGCTTGTCGGGAAGTTATCTATAATGATCTGGAAGAAAAGTGTGCAGGAATCATTGCTGTTGACCATCATGGTGAAGCTGTAATTGAAACCAATGCTGGAGTGATGTTTGTTGGCTCAATGGTCAATGGGATTCCTAGAACTGAGGTTTTGAGACCTATGAAGGGAATTTGTAATGTGATTTGGGAGACTGATGAATTGGTAGCTCACCTACAGTCTAATCCTTGGACTCCAGGAGCTACTGTTCTTACTCGAAAGAGAATGAATGGACCTGGAAGCATCTTTCAGTTGGTGTTACCTGACTATGTTGCAATTATGCAAGGGGCACAGGCTGTTGCCAATCTCCTTTGTGAAAAACTTGGTGTGCAACGCTGTGCCCTTGTGTCCATGCCAGAACTCGACAAGCCTGCTAACATCAAAGTGTTGCCCCTCCATGGCCTAGAACCCAACTGGAAACCTAAACTAGCTGAGGAAATTGAGTTCAATGCTTATGATCCTGGATACTGTAGCTCCAAAAGTGGTCCACGGTGTGAAGATAGCCATCTTGACCAGGTACAGGAGAAGATTCGTTCTCGACTCCCAACACCCAATGCACCTGCTTGCTTTGATTTCCATGGGGACCTTTCTGATGATGGCCTTTTCCCCCGCATTATTCGTGGTGAAGAGCAACAGTGGCGCATCTGGGAAGACAATGAACATGTAGCCTTCCTAACTCCTCTTCCAAATACACCAGGGCTTACAGTTCTTGTGCCAAGAAAACCACATACTAGTGACATCTTCAGGATGAATAAAAGCGACTATACAGATCTAATTGTGGCAGTACGAAAGGTTGCTCATCTTCTACAAGATGCAATGAATGCCCGTGGTGTGGCTATCATATTTGAAGGATTTGAAATTGATTATGCCCATGCAAAACTGATTCCATTAGTTCCTCAGACTAATGCCCCAAAACCCCCAGCTGTGGCTCCTCAGTTCTGTCCAACTTATAAAGGATATGTAACATCAGTAGATGGTCCCCCAGCAAATGAAGAGGACCTTTCAGAGATCCACTCCAAAATCACAAAAACTATTCCCCCTCAGTCCTGGCAAGACCCCCTGACTCATGCCTCATCAGCCATCAACAGCAAATGGTATCGCAATCTCTTTCAAATCCAAAACACCCTGTTTCATAGCACAGTGGAGTACTTCAACAACAAATGCAAGTATGGTTATGCACTGACACCAATCACGACAGACACAATTTCCTCTCCAATGGGTCTGGGGTCAGACTCTGAGCCCGTGTTTGTCAACATGCTAGGCCAAGATGTGTATCTGGCAGACTCTATGCAGTTTGTTTTAGAGTACTTCCTGAGATTTCATGATGGACTTCCTGGGGCTTACTATGTATCCCCCAGTTTCAGAGGGGAAGATCCTGATGCTACACATCTCAACCAGTTCTACCATGTGGAATGTGAGCTCCTGGGTGACATGGATGTTGCCATGAGTATAGCTGAAGGCTATGTTGCCCATTTGACAAAGGCAATGCTAAAGCAACATTCTGACATTATCTTAAACACTGCTGGTAAACTCTCTCATGCCCAGGAACTACTTAAGAATTTAGAAGGTCCCCTTCCAAGAGTAGCCTTGGATCAAGCCATTCACATTATGCCTTCCTCCGATTGCCTTGAGTGGGTTCAGGAGGGACAACCACAGTTTGGTAGGAAGCTAACTCGAAAGGGAGAAAAGGTCCTAATTGAGAAGTATGGAGGTGCTGTTTGGCTGACAGAAATGGACCATCTTGGAGTGCCTTTCTACCAAGCATATATCGAAGATTCAGGCCAGAGCAAAGCCAAGGCAGCTGACCTTCTCTTGGGCTTAGGAGAGACGGTAGGGCTTGGGGAACGTCATTCTACACCAGACATGGTACGAGAGGCCTTACAACACCATGCTGTGCCAGAGGACTCATACAAATGGTACATCAACATGCGTCAAGTCATGCCTCTTCTTACAAGCGGATGGGGTATGGGTACAGAGAGATACCTATGCTGGCTTCTGCAGCACAATGATGTCAGGGACATGCAAATCATACCTAggctgaaagcaaagaagttttTGCCTTAAATGGTGCACATTGTCCTTAAATGATTTATCATGTTCATGGACTTTCAACATTTACAAATACTCAGTATTTATATCGACAGTTTTGTAGCATTACAGCTTGATCTAATGTaagaaataaatggaaaatatacTCTCAAGAAGAATCTTAGAAATCATGTTTCAAAtggttaaatgtttaattttctagCAAAAAGTTTTGAACTTCCTTGACTGACAGTTAAATATATTCACAAAtgtaaaacagtttttatttcttCAATGCATTTACTGACATTGTTTTAGTTAAGATTAAACATGTATTGTAAGAACTTATGAGCCTTTAAAGTTTTATAGAATTGTAATAGTGCATTTATTTATCAAGACAAGTATTACTTTGCATTTTCTTTCTTATCTGTTAACACTTTCTTTGTGCTTATATGAATGCATTAAAACTTGCTTGCTGATTGCTaaaactgtattattttacaacattatttcaaggtgataataaaaatgcataacaaTAACCCTTAATgcctttctttttaaaatcatttttatcatTAAGTAATCTCAGTAC

Function

symbol description
si:ch211-256m1.8 Predicted to enable asparaginase activity and beta-aspartyl-peptidase activity. Predicted to be involved in protein autoprocessing. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0016540 protein autoprocessing biological_process
GO:0005737 cytoplasm cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0008798 beta-aspartyl-peptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004067 asparaginase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-417 Predicted to enable asparaginase activity and beta-aspartyl-peptidase activity. Predicted to be involved in protein autoprocessing. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000055172

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050022 True 5367 mRNA 0.43 4 25154078 25165189

Neighbor

gene id symbol gene type direction distance location
XLOC_025346 napsa coding upstream 20834 25121156 ~ 25133244 (+)
XLOC_025345 st13 coding upstream 53352 25087605 ~ 25100726 (+)
XLOC_025344 CR936416.1 coding upstream 93958 25055976 ~ 25060120 (+)
XLOC_025343 cbx7a coding upstream 159461 24986145 ~ 24994617 (+)
XLOC_025342 NA coding upstream 217823 24930580 ~ 24936255 (+)
XLOC_025348 TST coding downstream 1616 25166805 ~ 25169831 (+)
XLOC_025349 il2rb coding downstream 26177 25191366 ~ 25209006 (+)
XLOC_025350 c1qtnf6a coding downstream 51601 25216790 ~ 25222662 (+)
XLOC_025351 NA coding downstream 143521 25308710 ~ 25308964 (+)
XLOC_025352 mchr1b coding downstream 338253 25503442 ~ 25512817 (+)
XLOC_025429 BX649540.1 misc downstream 5083550 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 702065 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 936567 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 969652 24161869 ~ 24184426 (+)
XLOC_025353 NA non-coding downstream 407589 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 438479 25603668 ~ 25624618 (+)
XLOC_025355 NA non-coding downstream 480042 25645231 ~ 25648375 (+)
XLOC_025356 NA non-coding downstream 535402 25700591 ~ 25720214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00604811_00614185 MPST coding CI01000034 null 604766 ~ 614674 (-)