XLOC_025348 (TST)


Basic Information

Item Value
gene id XLOC_025348
gene name TST
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25166805 ~ 25169831 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050023
aaataaaatagccatTTCTAACCCTCTGTGTCGGTGTTATCTGTTCGTAATATAGACGGCTGTTATCCCGCAGAGGCGCATGAGTGTAATGGCCGCTCAAACTAGAGCTCTCGTAGCGGCCCGGTGGCTCGCAGACGCTGTCAAAAGCAACCGAGTGGGACCAAATCTGCGGATATTAGACGCATCATGGTATTTACCAAAAATGAAACGTAACCCCAGGGCTGAGTTTGAACAAACGCACATTCCGGGAGCCTCGTTTTTCGACATCGACGAATGTTGCGACAAAAGCTCGGAGTTTGATCACATGCTGCCTACCAAGGGCGAGTTTGCAGACTATGTGGGTAACCTGGGTATAGGAAACAACACTCATGTCGTCGTTTACGATGCCAGCGACTTCGGTTCGTTCTCCGCACCGCGGGTTTGGTGGATGTTTCGAGTGTTTGGGCACAGTTCGGTGTCGGTTCTGGACGGTGGCTTCAAGAACTGGTTAAAAGAGGGTCATCCTGTTTCCCAGCAGTACAGCAAACATGCGCCTGTAGACTTCAAAGCGTCCTTTAAAGAGTCATGGGTCAAAACTTATGAAGACGTGTTGAACAACATTAAAACTAAGGAATTTCAAGTAGTGGACGCCAGAGCCAATGGGAGATTTCGTGGGGTTGAACCAGAGCCAAGGGCAAACACAGAGCCTGGTCACATCCCTGCATCACTCAACATGCCTTTTCCAAGCTTCATGGACCCAGAGTCAGGTCTAGAACGTCCGGTGGAGGAACTAACCAAGCTCTTCCAGCAAGCTGGAGTTGACCTGCAGAAGCCCTTCTGGGTGACCTGTGGCTCAGGTGTAACAGCCTGTCACATCGCCCTCGCTGCTCACCTGTGCGGACACCCGGGGGTCAGTCTGTATGATGGGGCCTGGTCCGAGTGGTTCACCAAAGCTGCACCTGAACACATCATCTCTGAGGGAAAAGGAAAACAGCCATGATTAATGGTGTCTTAGACCCATGCGGCACCTTTTCATCAATAAACAACTGATGACCAATAGAATCactagacttttaaaaaaatcactgtGTTTTTTGTACTAATATTGTTTAAGAACTAAAGTCTATTTCTGGTTACAGTTATTTACACCTTGGAAGGGTGTTAAAATTAGACATAAGTATATCATTATGCTTTACCAATTCATAGCTCAATTAAGCTGCCAAATATCCTGAATTTATGGTCTGGTCACTTCAAAAACTTTGATTACTATATAATTGTCCTAGTCAAAGTAAAATAGCATTGCTTATTGTAAACATGTGATGCATATTTGTGTCACCTTAAATAATTTGGTGCTTTTAACTAAGGCTGATTAGTAAGTGATTTACGGGTTATCGATTGGAAGTGTTTCTAAGTTCAGTTGTTAAAGACTTATGTATTAAAGTAAGTTTTTATACCTGCATATCTAGGTTAAAGTTAATGTCCTTGATTTGAATGGGCCTAATGACCTTTGATTGTAATTGTCAAAACCACCTACAAAAATAATCTATTTACAAGACTGTTATTATATCCATAACATTAAGTTAATTTTCTTGTAATTTGTCTCATCAGATATTTTTCTGGCAACATGCGATTGATCTGTTACTATTTACTAGTTTTATAAACAAGTAAAATCCAAGTAATTGAA

Function

symbol description
tst Enables 5S rRNA binding activity. Involved in epithelial cell differentiation and rRNA import into mitochondrion. Located in mitochondrion.

GO: NA

KEGG:

id description
ko00920 Sulfur metabolism
ko00270 Cysteine and methionine metabolism
ko04122 Sulfur relay system
ko05150 Staphylococcus aureus infection
ko02042 Bacterial toxins

Ensembl:

ensembl_id ENSDARG00000093235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050023 True 1663 mRNA 0.42 2 25166805 25169831

Neighbor

gene id symbol gene type direction distance location
XLOC_025347 si:ch211-256m1.8 coding upstream 1616 25154078 ~ 25165189 (+)
XLOC_025346 napsa coding upstream 33561 25121156 ~ 25133244 (+)
XLOC_025345 st13 coding upstream 66079 25087605 ~ 25100726 (+)
XLOC_025344 CR936416.1 coding upstream 106685 25055976 ~ 25060120 (+)
XLOC_025343 cbx7a coding upstream 172188 24986145 ~ 24994617 (+)
XLOC_025349 il2rb coding downstream 21535 25191366 ~ 25209006 (+)
XLOC_025350 c1qtnf6a coding downstream 46959 25216790 ~ 25222662 (+)
XLOC_025351 NA coding downstream 138879 25308710 ~ 25308964 (+)
XLOC_025352 mchr1b coding downstream 333611 25503442 ~ 25512817 (+)
XLOC_025353 NA coding downstream 402947 25572778 ~ 25573533 (+)
XLOC_025429 BX649540.1 misc downstream 5078908 30248739 ~ 30249036 (+)
XLOC_025342 NA non-coding upstream 230550 24930580 ~ 24936255 (+)
XLOC_025327 NA non-coding upstream 714792 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 949294 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 982379 24161869 ~ 24184426 (+)
XLOC_025354 NA non-coding downstream 433837 25603668 ~ 25624618 (+)
XLOC_025355 NA non-coding downstream 475400 25645231 ~ 25648375 (+)
XLOC_025356 NA non-coding downstream 530760 25700591 ~ 25720214 (+)

Expression


Co-expression Network