XLOC_025352 (mchr1b)


Basic Information

Item Value
gene id XLOC_025352
gene name mchr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25503442 ~ 25512817 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050030
atgttttgaaaaatatccatATCGCATTTGACAAGAGTGTATTAATAAgtactttttatttcatgtttcagATTGTGATGGATTTCAACATGACTCCCAGTGAAAATTCCAGTAATGAGTTTAATTCATCTCAACATTTAAATAGAGACAATGACGAGCAATATCACAATGTCCTCATGCCAAGCATTTATGGAGTCATCTGCTTCGTGGGCATTATAGGCAACTGCATCGTCATCTACACTATCGTCAAAAAGACAAAGTTCAGAGCCCAACAAACTGTGCCCGACATCTTCATCTTCAGCCTGTCCATTGCTGATCTTCTGTTCCTCCTGGGCATGCCGTTCCTCATTCACCAGCTAGTAGGCAACGGCTCCTGGTGTTTTGGTGCCACCATGTGCACTGTTATCACAGCGCTGGACTCTAACAGCCAGATCGTGAGCACTTATATATTAACAGTCATGACTTTGGACCGATACTTGGCGACAGTCCATCCCATCCGCTTTAATCACATTCGCACTCCCCGTGTAGCCGTGGCAGTAGTAGCGCTGGTGTGGATCCTCTCACTGCTCTCCATCACCCCAGTGTGGATGTATGCGGGTCTCATGCCCTTACGGGATGGATCAATGGGATGCGCTCTGCTTCTTCCCAATCCAGCCACAGACACCTACTGGTTTACGCTCTACCAGTTTGTGTTGGCGTTCGCTTTGCCGTTGGTGATCATTTGCGTGGTGTTTTTCAAGATCCTCCAAAACATGGCGGCCACGGTTGCACCACTTCCCCAACACAGCCTACGTGTGCGCACTAGAAAGGTCACTCGGATGGCCGTTGCCATTTGCCTGGCGTTCTTCATTTGTTGGGCGCCTCATTACATCCTGCAGTTGGCACATCTGAGTGTGCAACGGCCCAGCTATGCATTTCTATTTGCCTATAATGTCGCCATTAGCATGGGCTACGCCAACAGTTGCATTAATCCTCTTCTTTACATCATGCTCAGCGAGACTTTCAAAAGGCAGTTTATTGTTGCCATCCGGCCGGCCCACAAGGACTTCCGGGCTGATCCGGCCGATGGGAGTGTCAGTCTGCGTTTGGCCCCTGACGTGGCCCAGCAGTCCCAATCATCTCGAGAGCTGCTGCCGGTTACTGTGGCTGTGCACTGACAATATTATTCCACCTGGGAATCTGCACTGAGTCACACGAACACATTCTTTGTGTCCGTAATGAGCACGCGGCTGGAGAGACGACGATGAAGCGTCTCGCAGAATTGCTCATTAACAGATTTTAAGGGTCGAAGGGGATATGTGATGATGCACATTTTCCTTGACGCATTTCTGTGCCGTGGAAAAGATATGATGCAAACAAGACCTAATTATGGCAAGGCTTTTATATTAGCtctaaatattagtttaaaaactttggGGTTGGTGTGAGATTTCTTAATTGTTTATTTCTCACGAAGACTGCAGTTAAAGagtctgtaaaataaatctgCGATTTAATGTCTGTTTTAAATAGCTGTGCTCTACTGaatgtattttgaaatgttatttattcctgtgatgacaAATCTGCTTAGCGGTGAGTTGGCAGTGTTATGCacaatctttcagaaatcattctaatatgctgatttggcaATCATTTGATGATTATTTAAGTGCTACTTGATGTTGCGAACAATTGTGCTGCTTAATGTTTTTGTGGAAACTGTAATACCTTTTTAGGATACCTTAATGAATGCAAAGATCAGCATTTATTTCAAATAGAAATCTTATTATGCAATCAGTgcaacaatttttaaaaggacCTCAAACATATATAGGTCAAAGACAAAAAACTGTTTAATatatcagctttttttttaaatgaaaagacAAAACATGGATGAAAATGTTCAGTCATGAGTGTAACACATGtgttttatgtaaaaatgaaacagcATACTTAATCTGGCCTCAAATGACTAAAAGCGTCTTGCTGTCAAATTTGTAAATCCCAGCCTGATCTTGCAAGgaaatgtagtatttttattattttatgttttgctaaatgactgaacaaaaatgttcagttttatAAAGAAGGCCCAACCCCTgccctaaacacaaccatcattgagggataagcaaatcatactaaattgtacaaatgagattgcaagagttcatacgaattagccactaaatcaaaaagttacgaattccTGTTAGATTGTGGTGGtaaatacaacccaggctcattctaaaaacgtaccactatatacactTCTAGAGAGCCAAACACGTCCCaggagcagttttttttattgcagtttttgcgaatctatcaaaggctgctgtgtatgctttttcagttcTCAAATTTCTCctgtgagtgccattcgtgcctgttattctcacataaatccaccagaggccgatgtcgaCTGAATGtttaactgactgaatgactgactgatcgttcgactgacccaccctcttccttctctaaacccaaccaatagtgttttcaaaagcaccgattgactagcccccacccacttctctaaatcCAACTAACAGTTTTCAGAAGCAATTCAGAGAAgaaaaagcccttgcctgattttttccacgtttttagattttaccacattctcaccctgttatttacttgtttattttgttctttaCCGGACTCTAACTCCGCCATCATGGTGAACTCTTCTctacatctcaagtccgccgacatacatgaTAAACTAACAGGACAAACTGTTAACTGCGAACAAGCTGTCTATACGGAGGCAGGCGGTCAGCTGGCAAGCACAAAAATCTATCGCGTCATACTATCCTGtcgtgttcattttaaagacaaaatgcagccatgcgtacttctagctacataattcacaatctccagaaatgtataggacATTTGTCTTCACCACTGTCACCAATGGCTTGTTTGCTTTGGGACTTATGTACGTCAGtcgatttgctcttcagtgtttggacttccagcagtaaacattaaaacacactcaactgaactaaactgaacttaaactctgaaatttGGACTgatactagaacttctatgttaagctgctttgacacaatttacattgtaaaagtgcttcagaaataaaaataaactaaactgaattgcacatatagggctacgttttcagaatgagcctatgttgggtataaatataaatagtataaatatttaaaaggacAATTTTGTATTTCAACAAGTGTTTCATATGCTTGAATACAGTTTTTAAATATGCAATCGaatgattcttgttttaaatatactTAACAAGAAGTTTTGGTTAAGAAACTACTGTTACAAAGAATGGCTTTTTAGTGGTAAATCATGGTAAGAAATGTATGGTAGTCATTAGCTTTTGCtcacaaacaaatgcaaataaacagCGCACATTCTAATgtcttggaaaaaatatatagttgtaTTAAACTTTGAAAGTGTTGATGCTTAAAACACCTTTCCATCTTTGACCCATATGCAAGTGATAAAATAATGATCTATATAcagtagagttgaagtcagaattattagcccccctttgatttttttctttttaaaatatttcccaaatgatgtttaacagagcaaggaaattttcacagtatgtctgataatatttttcttctggggaaagtcctatttgttttattttggctagaataaaagcagtttttaattttttaaacaccactttaaggataaaattattagcctctttaagttatatgttttttgatagtctacagaacaaaccatcattatacaataacctgcctaatcaccctaacttgcttagttaacccaattaacctagttaagcctttaaatgtcactttaagctgtatagaagtgtcttgaaaaatatctagtaaaatattatttactgtcatcatgacaaaaataaaataaatcagttattaaagatgagttattaaaactattatgtttagaaatgtgttgaaaaaaaatcttctctccgttaaacagaaattggggaagaaattaacaggagggttaataataatttataggggctaataattctgacttcaaatgtacatGTGATTTGCCCTGATGTTTTTCAAGTAATCAGTGTTTTCTGACATACATCTCGAGACATTTTGCTCATTTTCTACCTCAAAAGAGACATCTTTCACATTGCTAAAAGAATGTACAGTATGAGCTACAATCATGCTTATACACAACATGTTTTTCATGCCAGTGTACAAGTGTATGTGTTGATTGGCTATTCACTTTTTGGTATTGCATGCACGTTGTTCTCTATAATCACATTGATGTATTAAATCGTTTTCACAGTATGTGAAATATCAGCACAAAAGGATCGGTTTATGTGTCTGCAGAATACCCCACTATCTTCACAATGCCAGCCATTGATCTTCTGAAAAGAGACAAAGTAATTGATGGAAAGTAGTTTTTGTCATTTCATGAGCATATTCTGTTCTTGTAGTCAGCGCATAAAAAATATTCTCATCAAAGCTCAGTTTCCTCTTGTGATTGCGGTGCAAAAAACAGGACAGATGCTGTTGTTCAGAAACATCTTGCAGTTTCATCAGTCCAACATTAACCGGTAGAGTTTACTAATCATGAATATTAATGTGTGAGTTTATGATTTACTTTCATATTCTCTGTAAGGAGGACTCAATTCAAGCAAACAcctacagtgcaaaaaaaaaacttcctgtcGCTC
>TCONS_00050031
GTCCTCATGCCAAGCATTTATGGAGTCATCTGCTTCGTGGGCATTATAGGCAACTGCATCGTCATCTACACTATCGTCAAAAAGACAAAGTTCAGAGCCCAACAAACTGTGCCCGACATCTTCATCTTCAGCCTGTCCATTGCTGATCTTCTGTTCCTCCTGGGCATGCCGTTCCTCATTCACCAGCTAGTAGGCAACGGCTCCTGGTGTTTTGGTGCCACCATGTGCACTGTTATCACAGCGCTGGACTCTAACAGCCAGATCGTGAGCACTTATATATTAACAGTCATGACTTTGGACCGATACTTGGCGACAGTCCATCCCATCCGCTTTAATCACATTCGCACTCCCCGTGTAGCCGTGGCAGTAGTAGCGCTGGTGTGGATCCTCTCACTGCTCTCCATCACCCCAGTGTGGATGTATGCGGGTCTCATGCCCTTACGGGATGGATCAATGGGATGCGCTCTGCTTCTTCCCAATCCAGCCACAGACACCTACTGGTTTACGCTCTACCAGTTTGTGTTGGCGTTCGCTTTGCCGTTGGTGATCATTTGCGTGGTGTTTTTCAAGATCCTCCAAAACATGGCGGCCACGGTTGCACCACTTCCCCAACACAGCCTACGTGTGCGCACTAGAAAGGTCACTCGGATGGCCGTTGCCATTTGCCTGGCGTTCTTCATTTGTTGGGCGCCTCATTACATCCTGCAGTTGGCACATCTGAGTGTGCAACGGCCCAGCTATGCATTTCTATTTGCCTATAATGTCGCCATTAGCATGGGCTACGCCAACAGTTGCATTAATCCTCTTCTTTACATCATGCTCAGCGAGACTTTCAAAAGGCAGTTTATTGTTGCCATCCGGCCGGCCCACAAGGACTTCCGGGCTGATCCGGCCGATGGGAGTGTCAGTCTGCGTTTGGCCCCTGACGTGGCCCAGCAGTCCCAATCATCTCGAGAGCTGCTGCCGGTTACTGTGGCTGTGCACTGACAATATTATTCCACCTGGGAATCTGCACTGAGTCACACGAACACATTCTTTGTGTCCGTAATGAGCACG

Function

symbol description
mchr1b Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in morbid obesity. Orthologous to human MCHR1 (melanin concentrating hormone receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0030273 melanin-concentrating hormone receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030502-5 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in morbid obesity. Orthologous to human MCHR1 (melanin concentrating hormone receptor 1).

Ensembl:

ensembl_id ENSDARG00000022525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050030 False 4741 mRNA 0.38 2 25503442 25512817
TCONS_00050031 True 1056 mRNA 0.52 1 25508247 25509302

Neighbor

gene id symbol gene type direction distance location
XLOC_025351 NA coding upstream 194478 25308710 ~ 25308964 (+)
XLOC_025350 c1qtnf6a coding upstream 280780 25216790 ~ 25222662 (+)
XLOC_025349 il2rb coding upstream 294436 25191366 ~ 25209006 (+)
XLOC_025348 TST coding upstream 333611 25166805 ~ 25169831 (+)
XLOC_025347 si:ch211-256m1.8 coding upstream 338253 25154078 ~ 25165189 (+)
XLOC_025353 NA coding downstream 59961 25572778 ~ 25573533 (+)
XLOC_025354 NA coding downstream 90851 25603668 ~ 25624618 (+)
XLOC_025355 NA coding downstream 132414 25645231 ~ 25648375 (+)
XLOC_025356 NA coding downstream 187774 25700591 ~ 25720214 (+)
XLOC_025357 BX120006.2 coding downstream 232819 25745636 ~ 25746918 (+)
XLOC_025429 BX649540.1 misc downstream 4735922 30248739 ~ 30249036 (+)
XLOC_025344 CR936416.1 non-coding upstream 443322 25055976 ~ 25060120 (+)
XLOC_025342 NA non-coding upstream 567187 24930580 ~ 24936255 (+)
XLOC_025327 NA non-coding upstream 1051429 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 1285931 24217188 ~ 24217511 (+)

Expression


Co-expression Network