XLOC_025376 (atad5a)


Basic Information

Item Value
gene id XLOC_025376
gene name atad5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26244353 ~ 26266464 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050062
GGTGTTTGGCGCCATTTGTCGAAAACAATTCAACTACCCCAAAACCTACATTATAACAGAAAATGGGGTCTTAATATTAGGTTCAAGCGCACTTcagatttttaaagtaattttccACGCGGAGCGGGTTTGTGGGTTGGTTCTTACAACGCGTTATGCTTGTTTTCGCCGGGAAGTATATCGTTGTTTGGTAAATGTGTCGATAGATAGGCTTTGTGTTTACTCGGAGTCGTTGCTGGATTCATATTTATGCACTCTTCACTGTAATTCATGGATTATGTATCAGCAGATCCCCGAGGGAAATAAAACAACAGATCTTTAGTTTTAGGGTGAAAGATGGCTGGGGTTGTTGCATTGCCAGCTGTCATGGAGGATTTCGAGGGTCAGCCGTGCAAAAAAATGAGAAAGGATGGCGATGCACCATCTGTCAGAACTATCACTAACTACTTTGCACCCAAGATAGTGGAGAAACCGTTCTCACCGCCTCGATCCAACAACATCATGGACTTCTTCAAGAAGACCTCGCCTGCACCAGAAATAAAAAACTGCTCTCTGAAAGCTAAAGAAAACTCGCCGCATTCTTCAGAGCAAGTAAGTCAAGAAGTCTCAGGGAAACCTGTTCGAGGACGAGGGCAGAAGCGCACCAGGAAGACTAAAGACAAGAAGAAATCTAAAGAGGAGGATGCACAGGTGGTCACAGATGATGTTGTGCTTATTGAGAGTCCCGGTGATTCAaaggaaagtgaaactgctgGACTTCCAGATAGAACTTGTCCTGATATGAAAGAATCCAACTTGAGGAAAAATGCCACAGAGGATGATTCAAGTACTCTGACTGTTAATAAGTCTGTGGAAACTTCTGAACAGAAACCGTTGTTAAAAAAAGATGGTGGGAACAAAAAATCTGCCTTGAGGAGAAACCGTAAGGCAAAAGGTGACTGTGAAGAGAGTAAGGAATGTGTTGGTGATGCTCAAGAGCCGGTGTGTGGTGCTAAACCTGAGCAGTGTGCCGAAAAGAAAAGCAACACCGTCACCAtctcatttttagattttatgcaCAATCAAAGTCATGAGGAGGAGGAGAGCAATGCTGTTTCCAAGACTGACACTGCTGAGACTTCAAGTGAAGTGAACATCTGTAATAATGCAGGTGATTCTGCTGTCGGTCCTCTGCAGGTGTCACCCAGAACTCTCACCATTCAAGCAGAGGTGCATCCCATTTCCCCTGATCACCATGAGTCTCTAAAAGTGTCCAAGGATTACAAAATCGCCTCcatttttattagaaataaaaaaagccAAGTAAAAGATGAGAAGAGATTGTCTGATCCTATGCCTGAGGTTAAACCTGATGTTTTGCCTGACCTCAAAAGGAAGTCTAATGTTGTTCTTCTTGAGGAAGATCTGGAACTAGATGTGGTGGAGTCCAGCTCCAATCCTAAAAGCACTGAGGCGGAGAGAAAGCAGTTTATGAATGCTTTTAAGCAGCCGAGCCTTGATGGAGTTAAAAACAAACCCAATAAGGGACAAAGCAAGCCGAGCCAGCTTCAAGAGCAAGTCCTGGAGGCAGCAGAGAAGGAACCTGAAGAAAAAACAACTGAGAAGAAACCTGAAGTTACAAGCTTGGAGAAGAATGAAGAAGCAAAGAGTTGTTCTGTTGATAAAAAGATGAAAGTTCGAAAATCTGGAAAAAAGGCTCAAGCTAAGAAAGCTGAAGACAAACAAGATATGAAACCTGAAGAACCTCCAGCAGAGATGGAGGTGGAGAAAGAGAGCAGCCCAGCTGAAAAAGACAACACTGAAGAGCCTGTCAGAGAGCTCAGGAGGTCAACCAGAGATCTGTCACGTAGACAAACAGCTGCTGCGCCACAGAAGAAAGAGAAACAAGAAAACACAGTAAAAGATGACGAAACCCAAAATACACCCTCTCCTTCTCTGGCCTCCACCCCGAAAGTTCAAAGACCCAAAAGGGGAATCTACAGAGCTGAAATACTCTGTCCACCATACACAAAAGGCAGTCCTATCAGGATGAGAATCAGTCGAATGCCTCCAACTTCTGCCACAAAAGCTGGTGATTTTGAAATATCAAGTCCTCTCTCAGCACAGgaattaaATGCAGCTAAAAAGAGAAAGCAAGCTAAAAAGCTTGTTCAGAAAGCCAAAGCACTTCAGCAAAATAAAAAGGACACTAAGAAGGAGAAAGAGACTGTAAGACGCTCTACAAGAAGCAAAGAGTCATCAATAAATTACTGTGAAGACGAGgaCTCCATAGTGTTTTTGGAGGCAAGCAAAAGCAATCCAGTCTCCTCACAGGAAAGtgagaaaatcaataaaaaacttCGAAGCTTGAATGAGGTTTTGGGGAAAAATGCATCTCAAAACAAAACATCCAAGACTCCTGCAGGTTCTAAACTTGCTCCTCTGTTTGTTGAGAAAAAAGCTCAGAGACCTTCAGCTGTCATCTCCATTTTTGACGACAGCAGTCGTGAAGCTTCTGAGAACTCGCAAGACGATGAACAGTTTAGAGCAAAGAGAGAGTTTCTGAAGAGTGGCCTTCCAGAGTCTTTTAAAAAGCAGATTGCAAAGACAGCAGCCAATCGAGAGGCTTACAGTCAGGCCTGTGCTTCATTCCAGACAGTGGTGCACGTCCAGCAGAAGACTCCAGATTGTTCTGTCTGGAGCCTCCAGTGGCCCACAGACCCTTTGCTGAGTTGCTTAAAGGAGTTCTGTAATATACCATCGGTGCCACTGATGTGTTTGGAGAAGTCTTTAGGGTGTACTACGGTCCCGGCTAAGAGAACATTTTGCAAGCAGGTTTCTTGTCAGAAGACCGAGTTTTCTGAGCCAATCAGACAGTGTCTTTTGGAGAAGATGAGAATCTCCAATCCATCCTTCCCTCATCAGCGATTCTTTACTCGGTTCATTAAGAGACGTGAAGACTACATCCTCCAGGCTTCTGCAGCAGATCTTGAAGATGAGTCTAAGGAGTCCTGTCATGCTGGATCATCCGATGCTGTCGGGAGAAAACGGAAACGTGTGGATGAAGGAGAGGCAACCGGCAAAATAGGCAAAAAAACTAAATCCAGTCATACAGATGATGATGTCATAGTGATAGAAGTAAGTCCACCATCAAGAGGTGAAGCAGCACAGCCATCTGGGAGAGGTCGAAGAGGTCGATCACTGAGACAAAAGCAGAAAGAAGAGTCCAAACCAGAAGACCAGACCTCACCTGTGAACGATGATGTCATGATTGTGGAACCAGCTGTCTCCAGAAATACAAGCACAGAAGATGGAATTAAAGAGGATGTGCTTTGGACAGAGAAATATCAGCCACAGCACTCCAGTGAAATAATCGGGAATATGGAGTCTGTCCGGAGACTACACAGctgGCTGAAAGAGTGGAAATTGAGAGCTGACCGAGAAGAGAGGAGGAAACAGCAGGAAAAGAAGCACGAGGAGGACAGTAATGACTCCTGGCTCATGAGTGAAGACCTGGATGAGACTGAAGATTTTCTGTGTAACACACTGCTTATTACTGGACCCACCGGAGTGGGCAAAACTGCTGCAGTCTATGCCTGTGCACAAGAACTGGGATTCAAGGTATTTGAGGTAAACTCCTCTTCTCAGAGAAGTGGTCGTCAGATCTTATCCCAGTTGAAGGAAGCCACTCAGTCCCACCAGGTGGACATCCAGGGTGTCAATGCTCACAAACCGTCCTACTTCAGCAATTACAGCAGCAACAGCGCCACCGTCAAACCCGGCACTTCTCCTAGGAAGCTGAACTCCCCCAGAAGGGTTGTATCATCTCCAAGAAAGCCGCCTCAGTCTCCTCGAAGTGCTTCATCCAGAAGAGGAGGACTGGCGCCAACATCTTTAACCAGTTTCTTTAAAGCAGGTGGAAGATCCTCTGGAAAAGAAGTAAACAATCAAGACAAGAAAACACAACCTGCATGTCCAAAAAAGTCTGCCAAAGCTAAAGAGGCTGATGATAAAAGTAAAGTGTGCCCAAGTGGAACTTCAGTGGGCAGCAAAATCTCCTCTGAAGACCAGGCCAAAAGGACGGCCACGTCCCTTATCTTATTCGAGGAAGTGGACATTGTTTTTGATGATGACTTGGGATTCCTGGCTGCAATCAAAACCTTCATGACCACCACTAAGAGACCAGTTATTCTGACAACGAGTGATTCAACTTTCGGTGCCATGTTTGATGGGCAATTCGAGGAGATCCATTTCAAATCTCCTTCAGTGGCGGATGTTTCCAGTTACGTCCGGCTGTTGTGTCTGGCAGAAAACCTGAGAACTGATAGTAAGGATGTGTCCTGTTTGCTGGAGTGGAACGGCTGTGATATTCGGCAGAGTCTTCTGCAGCTGCAGTTTTGGGCCTGCAGTGGTGGAGTACAGCAGATACAGAGGCCTCTGCCCTCATCAGAAAGCAAAGGGAAGCCCAAGAGTGGCACTGATCTTCAGCCTGTGAAAGCTGAGGATGTAAAGGAGGAAAATCTGCCACATTGCCACACTGCGTTTACAGAGAGCTTGCTGGGGGTCTGCAATATGCAAACAGAAAATATTGCAGATTTACTGCTtaagCATGAACCCTCTGATCTAGAAAGCATTAAATCCTGGGATCTTCTTTCTGAGGCCCACAGAAGAGGAGTGAATCTTCTCCATTCGAATATGGAGAGTCTGCTTCCACTGCCAACTCGTCTTTTACCCCAGTCCACATTTAAACCACAAGCAGCACCAGCTCCACAGTCCCAGCCTGAGCAACTACCTCAAACTGTGAGATTAGAAAGTTTGGACGAGCCCTCTGATGACGGCAGTCCTCTCAAAGTGTCCGCGAGAATGAAGGGGCGTAAGAAGATGAGCATTAACCACAAAGATGTTTTCCAGTCTGATTCAGAGTCTGAGGAAGACTTCCTCCCACTGCCAAAAAACAGCAGAGATCCTGCTCAAAGCACTAATGTAGAAACAGCCGACGTGCCTGAAGCTGCCCCCAAAAAATCAAGGTGTATTGTGTTAACTGAAGCCGAAAAGAAGAAGAGCAAGCCAGTGATGCAGTGCTTGAGTGGTTTGGCAGAGTTTTTAGACCACATGTCCTTCCTTGACTCCTCACTACACTATCAAGCCTCGCAGTCAGAGGGGTTTTGCCGACCCCAGGATTCTGGCTGGACCAGTGCAGAGATCAAGAGCGGGATGACTGATGATATTCGGTTAGAGTCTGTCAAGCAGGCCAATAGTGTTAGTGTTGAAGAAGTGCATGCTGTTTTGGAGCATTTGAGTTTTAAGAAGTGCAAGGCTGTAGTGTCTGATGCCTGGGACAGAGTGCAGCAGCTGGAGGCCGAGATCAGAGGAAAAGCTGAGGAGGAGCTCACACTCTCCGTGGCTCCACACAGACAGAGCTTCAGCCTCACACAGACTACACCTTGTGAACCAAGAGTGATGGAGAGGAGAAGTGAGGTGCTGAAGTCAGTCCTCTCCACCAGGTCTTCTGGAACACTGGGCAGCCGAGCAGCAGTGGCTCTGGATTACCTGCCCTGTCTGCGCACCATCTGCAGATCAGAAAGACTGAAGGAGCAGGGAAAGATCAAACGCAGGTTCTTGCACTATTTGGATGGTATACACTTCACTCTTCCTAAAAGCACCGTGGAGTTCCTGGCATCCGATTTCCCTTAAATGACATGCATCTTCAGGCAGCCGGTCGAGGGCTGCTGTGAATATGCATTTGTACAGTAATATATACTCAGAAGGAGtgtgcttttatgttgttgtgtgGATAGCATGGATTTTGTACGGTTTTAAATTTGCCGTTGCTCATTATGAAGATCATTTATGTTTTGTAATTTGTCATGCATTTTTCAAAAGGTTTTATCAAGTAATAAATTTGGATTTGCTATTTGCCAGCAAacatgttttcctcaaaatatgTATGTAAATTGTATAAGATCTTTAAACATGATGGTGCTACTGGAA
>TCONS_00050063
atgcaCAATCAAAGTCATGAGGAGGAGGAGAGCAATGCTGTTTCCAAGACTGACACTGCTGAGACTTCAAGTGAAGTGAACATCTGTAATAATGCAGGTGATTCTGCTGTCGGTCCTCTGCAGGTGTCACCCAGAACTCTCACCATTCAAGCAGAGGTGCATCCCATTTCCCCTGATCACCATGAGTCTCTAAAAGTGTCCAAGGATTACAAAATCGCCTCcatttttattagaaataaaaaaagccAAGTAAAAGATGAGAAGAGATTGTCTGATCCTATGCCTGAGGTTAAACCTGATGTTTTGCCTGACCTCAAAAGGAAGTCTAATGTTGTTCTTCTTGAGGAAGATCTGGAACTAGATGTGGTGGAGTCCAGCTCCAATCCTAAAAGCACTGAGGCGGAGAGAAAGCAGTTTATGAATGCTTTTAAGCAGCCGAGCCTTGATGGAGTTAAAAACAAACCCAATAAGGGACAAAGCAAGCCGAGCCAGCTTCAAGAGCAAGTCCTGGAGGCAGCAGAGAAGGAACCTGAAGAAAAAACAACTGAGAAGAAACCTGAAGTTACAAGCTTGGAGAAGAATGAAGAAGCAAAGAGTTGTTCTGTTGATAAAAAGATGAAAGTTCGAAAATCTGGAAAAAAGGCTCAAGCTAAGAAAGCTGAAGACAAACAAGATATGAAACCTGAAGAACCTCCAGCAGAGATGGAGGTGGAGAAAGAGAGCAGCCCAGCTGAAAAAGACAACACTGAAGAGCCTGTCAGAGAGCTCAGGAGGTCAACCAGAGATCTGTCACGTAGACAAACAGCTGCTGCGCCACAGAAGAAAGAGAAACAAGAAAACACAGTAAAAGATGACGAAACCCAAAATACACCCTCTCCTTCTCTGGCCTCCACCCCGAAAGTTCAAAGACCCAAAAGGGGAATCTACAGAGCTGAAATACTCTGTCCACCATACACAAAAGGCAGTCCTATCAGGATGAGAATCAGTCGAATGCCTCCAACTTCTGCCACAAAAGCTGGTGATTTTGAAATATCAAGTCCTCTCTCAGCACAGgaattaaATGCAGCTAAAAAGAGAAAGCAAGCTAAAAAGCTTGTTCAGAAAGCTGAGGATGTAAAGGAGGAAAATCTGCCACATTGCCACACTGCGTTTACAGAGAGCTTGCTGGGGGTCTGCAATATGCAAACAGAAAATATTGCAGATTTACTGCTtaagCATGAACCCTCTGATCTAGAAAGCATTAAATCCTGGGATCTTCTTTCTGAGGCCCACAGAAGAGGAGTGAATCTTCTCCATTCGAATATGGAGAGTCTGCTTCCACTGCCAACTCGTCTTTTACCCCAGTCCACATTTAAACCACAAGCAGCACCAGCTCCACAGTCCCAGCCTGAGCAACTACCTCAAACTGTGAGATTAGAAAGTTTGGACGAGCCCTCTGATGACGGCAGTCCTCTCAAAGTGTCCGCGAGAATGAAGGGGCGTAAGAAGATGAGCATTAACCACAAAGATGTTTTCCAGTCTGATTCAGAGTCTGAGGAAGACTTCCTCCCACTGCCAAAAAACAGCAGAGATCCTGCTCAAAGCACTAATGTAGAAACAGCCGACGTGCCTGAAGCTGCCCCCAAAAAATCAAGGTGTATTGTGTTAACTGAAGCCGAAAAGAAGAAGAGCAAGCCAGTGATGCAGTGCTTGAGTGGTTTGGCAGAGTTTTTAGACCACATGTCCTTCCTTGACTCCTCACTACACTATCAAGCCTCGCAGTCAGAGGGGTTTTGCCGACCCCAGGATTCTGGCTGGACCAGTGCAGAGATCAAGAGCGGGATGACTGATGATATTCGGTTAGAGTCTGTCAAGCAGGCCAATAGTGTTAGTGTTGAAGAAGTGCATGCTGTTTTGGAGCATTTGAGTTTTAAGAAGTGCAAGGCTGTAGTGTCTGATGCCTGGGACAGAGTGCAGCAGCTGGAGGCCGAGATCAGAGGAAAAGCTGAGGAGGAGCTCACACTCTCCGTGGCTCCACACAGACAGAGCTTCAGCCTCACACAGACTACACCTTGTGAACCAAGAGTGATGGAGAGGAGAAGTGAGGTGCTGAAGTCAGTCCTCTCCACCAGGTCTTCTGGAACACTGGGCAGCCGAGCAGCAGTGGCTCTGGATTACCTGCCCTGTCTGCGCACCATCTGCAGATCAGAAAGACTGAAGGAGCAGGGAAAGATCAAACGCAGGTTCTTGCACTATTTGGATGGTATACACTTCACTCTTCCTAAAAGCACCGTGGAGTTCCTGGCATCCGATTTCCCTTAA
>TCONS_00050064
ATTCAACTTTCGGTGCCATGTTTGATGGGCAATTCGAGGAGATCCATTTCAAATCTCCTTCAGTGGCGGATGTTTCCAGTTACGTCCGGCTGTTGTGTCTGGCAGAAAACCTGAGAACTGATAGTAAGGATGTGTCCTGTTTGCTGGAGTGGAACGGCTGTGATATTCGGCAGAGTCTTCTGCAGCTGCAGTTTTGGGCCTGCAGTGGTGGAGTACAGCAGATACAGAGGCCTCTGCCCTCATCAGGCAAGGATGTATTTAGTTTAATTGAGAAAACATGCTTCAGAAACTTTTTGGCTGTGTATGATAATATGACACTCATCTGTTTTCGCACTATAGAAAGCAAAGGGAAGCCCAAGAGTGGC

Function

symbol description
atad5a Predicted to enable DNA binding activity and DNA clamp unloader activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; nervous system; neural plate; optic vesicle; and somite. Orthologous to human ATAD5 (ATPase family AAA domain containing 5).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0061860 DNA clamp unloader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-20 Predicted to enable DNA binding activity and DNA clamp unloader activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; nervous system; neural plate; optic vesicle; and somite. Orthologous to human ATAD5 (ATPase family AAA domain containing 5).

Ensembl:

ensembl_id ENSDARG00000070568

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050062 False 5970 mRNA 0.45 23 26244353 26266464
TCONS_00050063 False 2301 mRNA 0.46 7 26245731 26266167
TCONS_00050064 True 365 lncRNA 0.46 2 26260528 26260981

Neighbor

gene id symbol gene type direction distance location
XLOC_025375 nudt9 coding upstream 11580 26223376 ~ 26232773 (+)
XLOC_025374 FP016144.1 coding upstream 49894 26194344 ~ 26194459 (+)
XLOC_025372 atp2a1 coding upstream 87287 26081343 ~ 26157066 (+)
XLOC_025373 hsp70.3 coding upstream 117262 26123736 ~ 26127091 (+)
XLOC_025371 NA coding upstream 163953 26076494 ~ 26080400 (+)
XLOC_025377 adap2 coding downstream 1261 26267725 ~ 26281561 (+)
XLOC_025378 rhot1a coding downstream 22517 26288981 ~ 26319758 (+)
XLOC_025379 si:ch211-156b7.5 coding downstream 56132 26322596 ~ 26326763 (+)
XLOC_025380 si:ch211-156b7.4 coding downstream 76304 26342768 ~ 26343648 (+)
XLOC_025381 rps15a coding downstream 79268 26345732 ~ 26351656 (+)
XLOC_025429 BX649540.1 misc downstream 3982275 30248739 ~ 30249036 (+)
XLOC_025364 NA non-coding upstream 257409 25985339 ~ 25986944 (+)
XLOC_025360 FP101990.1 non-coding upstream 399025 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 490804 25752221 ~ 25753549 (+)
XLOC_025382 NA non-coding downstream 88830 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 144769 26411233 ~ 26416784 (+)
XLOC_025384 NA non-coding downstream 369356 26635820 ~ 26636398 (+)
XLOC_025390 NA non-coding downstream 1027844 27294308 ~ 27343689 (+)
XLOC_025391 NA non-coding downstream 1080375 27346839 ~ 27494805 (+)

Expression


Co-expression Network