G617624 (LOC106582928)


Basic Information

Item Value
gene id G617624
gene name LOC106582928
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49184424 ~ 49186096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU702802
TGAGATGGACAAAATGTTAAAAACATACAGCTTAGGAACAATGTCTCGTCTAAGATAAGTCTGTGTTCTTTTCTTTACATAATAACACTGAAACTATAATCGTAACAATATCCTTGTGTTCTGAAGAAAGCAAAAAGAGTGAAAATaaattatcataacaactagtatAACATCAattataacaacaataataacaattatTAACTTTATATAAACTTTCTGTTTGCTTGCTTCTTTTTTCCAATAAAGTCCAGGGGGACCAGGCGGGTGGTGTGTATTCCAGCATgtgagaggtgaggggtcagtggtgtgtgtgtgtgtatgcatgtgtggggAGGCTGGTTCAGAAAGTCTCTCATACCCACGGTGTCAACAGTCTGTCCACAACAGGAAGGGGGAGGTTGGTCTCATTACACTACAGAGGTACAGGAGGGGAAAGCAGTGGTTCTCCTAATACCTCACATCTTTTCTCTCATAGGGTGGGAGGGGTACCAAAGTGACTCAGTAAAAAAAAAGGCAACTTGAAGGGAGCAACTCAACACGCCCATGTTCCGCTTCACCCTCGCACACTCACGTTCTCTCTCCCTTCAGTCACGTCTCCTCTCCATCAATTCTCTAAATGAGGCCAGGCAAAACAATGTGCTACTGACAGTGAGCCCAATTTACCCCTCTAGAGACAGAAGCATTCGTGGTGATGATATGGTGGAGGGGTGATGGAGGGGCTTCAGGAGGTTTCAGTGCTCAGCCCAAGCCGGCGACCGTCCGGAGTGATGGTGAGGATGGCCGAACGAAGGGTggatgggagtgggagtgggcAGCATGTGTCCGGAGTGGCTGAAGGGGGGAAGGTGGCCCATGTGGGTCATGTGTCCAGCCAGGCCAGGGCCACCGCCGAAGGGGGAGGACTTGTCATGCATGCATTTGGACAGCTCATCGTAGCCATCTCCGGAACGCCTGCCCCTCTTGGACTTGCTGGACATCTTGCGGTTGCGTGTCTGGATGCCCTCCTTCTTCATGGTCATTGGCCTGTTG
>TU702803
cattgtgaaaaGCAACTTACTTTATATGAACATGTATTCCAATGTGAAACATGTATTTCGAGATGTAACACTGATTAAGTTTGGTGAAAAAGGGACTGTGATTTTGTGTGTTGTacttagtcaattgaaaatgtgctttGAGTTTTTAAACAACTGCCTTGTTTTGTACTAAgtgttgtgaaaatgtaccacatactgtacttgtgaaaattgcaccaaagcgatagaaaaaaactgtaatatgaaCCGAAAATGTGTATTTCTGTAGGACATGTGTACGCGTTAGTGTGTGACGTGGGAGCCCTGTGCTCACCCTGGGTTTGGAGCCTGCTGTCTGGGTCACACTGGTGCACCCTGGGGCGTGAGCTCCACAAAGAAGCCTTCTATAAACAGCAGCACATCACTCAGGGGAGGAGCTCAACAAAACCATTACTGCACTTTGGGGATCATAGAGTTGGCTTCATTACATCTGATATCACTTAGAAATACAGCAGGAATCAAAACCTCTTCACCAACACTGGAAttcacactgacactccaataGACacagatggcgagagagagacaaagacacgaTACATTTCACATTTAAAGGACTCAGTGACATTATTTAGTATTAAAACTTGATTTCCTTTATTTTGTGAGATGGACAAAATGTTAAAAACATACAGCTTAGGAACAATGTCTCGTCTAAGATAAGTCTGTGTTCTTTTCTTTACATAATAACACTGAAACTATAATCGTAACAATATCCTTGTGTTCTGAAGAAAGCAAAAAGAGTGAAAATaaattatcataacaactagtatAACATCAattataacaacaataataacaattatTAACTTTATATAAACTTTCTGTTTGCTTGCTTCTTTTTTCCAATAAAGTCCAGGGGGACCAGGCGGGTGGTGTGTATTCCAGCATgtgagaggtgaggggtcagtggtgtgtgtgtgtgtatgcatgtgtggggAGGCTGGTTCAGAAAGTCTCTCATACCCACGGTGTCAACAGTCTGTCCACAACAGGAAGGGGGAGGTTGGTCTCATTACACTACAGAGGTACAGGAGGGGAAAGCAGTGGTTCTCCTAATACCTCACATCTTTTCTCTCATAGGGTGGGAGGGGTACCAAAGTGACTCAGTAAAAAAAAAGGCAACTTGAAGGGAGCAACTCAACACGCCCATGTTCCGCTTCACCCTCGCACACTCACGTTCTCTCTCCCTTCAGTCACGTCTCCTCTCCATCAATTCTCTAAATGAGGCCAGGCAAAACAATGTGCTACTGACAGTGAGCCCAATTTACCCCTCTAGAGACAGAAGCATTCGTGGTGATGATATGGTGGAGGGGTGATGGAGGGGCTTCAGGAGGTTTCAGTGCTCAGCCCAAGCCGGCGACCGTCCGGAGTGATGGTGAGGATGGCCGAACGAAGGGTggatgggagtgggagtgggcAGCATGTGTCCGGAGTGGCTGAAGGGGGGAAGGTGGCCCATGTGGGTCATGTGTCCAGCCAGGCCAGGGCCACCGCCGAAGGGGGAGGACTTGTCATGCATGCATTTGGACAGCTCATCGTAGCCATCTCCGGAACGCCTGCCCCTCTTGGACTTGCTGGACATCTTGCGGTTGCGTGTCTGGATGCCCTCCTTCTTCATGGTCATTGGCCTGTTG

Function

NR:

description
PREDICTED: GATA-binding factor 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU702802 False 1032 TUCP 0.49 1 49184424 49185455
TU702803 True 1673 TUCP 0.45 1 49184424 49186096

Neighbor

gene id symbol gene type direction distance location
LOC110527948 LOC106582926 coding downstream 40271 49136688 ~ 49144153 (-)
LOC110527945 LOC106565815 coding downstream 66586 49115044 ~ 49117838 (-)
LOC110527944 NA coding downstream 96229 49083910 ~ 49088195 (-)
LOC110527937 LOC106582921 coding downstream 179588 48997764 ~ 49004836 (-)
LOC100136282 LOC106582915 coding downstream 381346 48787061 ~ 48803078 (-)
LOC110527952 LOC106582936 coding upstream 89085 49275181 ~ 49289804 (-)
mustn1b mstn1 coding upstream 108944 49295040 ~ 49297305 (-)
LOC110527953 LOC106582935 coding upstream 117060 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 131488 49317584 ~ 49334930 (-)
LOC110527955 LOC100195900 coding upstream 156262 49342358 ~ 49380684 (-)
G617621 NA non-coding downstream 2853 49180790 ~ 49181571 (-)
G617618 LOC106582928 non-coding downstream 6327 49174363 ~ 49178097 (-)
G617617 LOC106582928 non-coding downstream 10967 49172440 ~ 49173457 (-)
G617607 NA non-coding downstream 28494 49155700 ~ 49155930 (-)
G617606 NA non-coding downstream 30344 49153809 ~ 49154080 (-)
G617628 NA non-coding upstream 5260 49191356 ~ 49191558 (-)
G617637 NA non-coding upstream 19476 49205572 ~ 49268133 (-)
G617650 NA non-coding upstream 112549 49298645 ~ 49301227 (-)
G617730 NA non-coding upstream 228030 49414126 ~ 49414400 (-)
G617875 NA non-coding upstream 356657 49542753 ~ 49542966 (-)
G616880 NA other downstream 655256 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 1914353 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3308724 45874965 ~ 45875700 (-)
G611674 NA other downstream 4698672 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 5604460 43579093 ~ 43579964 (-)
G617632 NA other upstream 9508 49195604 ~ 49195970 (-)
LOC110527961 LOC106565835 other upstream 473939 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1118352 50300364 ~ 50306278 (-)
G619733 NA other upstream 1770175 50956271 ~ 50958540 (-)

Expression


Co-expression Network