G617650


Basic Information

Item Value
gene id G617650
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49298645 ~ 49301227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU702834
caagaccgtgcaggacgtttttcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcacaccgagcacatgtgacagagtctggagacgcagtggagaacgttctgctgcctgcaacatcctccagcatgaccttgatgctatggactggcccgcccgttccccagaccagaatccaattgagcacatctgggacatcatgtctcgctccatccaccaatgccacgttgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaagagactatccgccacctcatcaggagcatgcccgtgcgttgtagggaggtcacacaggcacgtggaggccacacacactactgagcctcattttgacttgctttaggacattacatcaaagttggatcagcctgtagtgtggttttccactttaatttggagtgtgactccaaatccagacctccatgagttgataaatttgatttccattgataatttttgtgtgattttgttgtcagcacattcaactatgtaaagaaaaaagtacttaataagaatatttcattcattcagatctaggatgtgttattttagtgttccctttatttttttgagcagtgtatttttaaacctgcatattttgcacacaaaaaatccaggttagcaggcaatattaactaggtgaaattgtcacttctcttgcgttcattgcacgcagagtcagtgtatatgcaacagtttgggccgcccttttgccagaattgtacgtaattatgacatacattgcacaaccttcaatgttaacaggaatatttagatttatggatgccacccgttagataaaatacggaacggttccgtatttcactgtaataataaacgtcttgttttcgagatgatagtttccggattcgaccatattaatgacgtaagactcgtatttctgtgtgttataatgttataattaagtctatgatttgatatagcagtctgactgagtggtggtaggcaccagcaggcttgtaagcattcagtcaaacagcacttttgtgcattttgccagcagctcgtcgctgtgcttcaagcattgagctgtttgacttcaatcctatcaactcccgagattaggctggtgttgACATTTTGCTGAAATCCAGTcaggtgtgtttttttttgtggttttTGGCGAATGCGTAATAATGATTTAAAGTCGCGCTGTTGCAAcagcctgtaaacacacagtccagttcaaagtgaatgattgCAGGCACGTGTTTCAAATTACTTGTTTGTATGAAGGTCTACTATAGCTCTGATTAGCTATAGCGGTCCGTTCCGTGTCGTCTCCGGTCCTGGACAAGACCAATGGTttttattcgtttttttttttgtacagcagtgtctattaattgccCAAACGCTCGGCCGCTTTCCCACTCTCTATTTTCACAAATCCTTTAGAATACTTCATtccaaacattctaagaatttaGGAAACcatgaaaatgaccatatctaattTGTCACTTGTCAGAATAATTTTTTAAAGTgtcattcttcctgggggtgtatatgaacagatttcaTGTTGAAAAAATGCGGTCAGTTCCACTTTGAATGCAGCAGTGTTCCACACAAATAAGTTATTTCCGTACTtctttctacatctgcattgcttgcgttttggggttttaggctgagttagtgtacagcactttgtgacatctgctgatgtaaaaaagggcgttataaatacatttgattgattgatggctAACAGCAAGCACGCTGCAATAGAAAAGTTCCACTCACCAGATGATGATCATTTGAAACTTCTTGTTGAAAGTTATTCTTTAAATGGGagaagctaacaaattagcaacaacatcctCTTTGATAACACCTGCTGCAGCCCTGTAAACTGTTAACCCTTTCCATCCAACAAAAACTGATGATTAAATCAGAACATCATTTTAAAATAGTATAATTTAtaattattttataaatcctAAGCCCTTTCCTTAGCCCATTGTTCCCCAGTGTGTTTGGGTTAGTAATAACTTGTAGAGTGGCTCTATTTGCCCTCAGCATGCATTTATTCACTATTATGAATATCTAAAATATCCATATGTtattctgaaatatgaacacagaaatactggacatttttAACTCCTATGGTGGTGATTTGACAATAACATtcatggtcttgaattggactcgCATTTTTCTGGTCTTGACTTTGTCGTCCCCCCTTCCTCAGGTCTAGGTGTTGAATCGGTCTCGCTTTAGGTGACCAGGAACACAACACAGAGTGTCTGTCTTAAGGAGTGGTGATACAGTAAATGTGGTGATAATGAACTGTTTGAGTAGGATGTTGGCTGAGGCAAAGGAATAACTGACTGTGGGGTTTGGTAAACGGTGGTGCAGGTTGTCCTCCGTTCAACAGAGGGATTTTATTGTAAAAACTAAAATGACTGGCAAAGGATCGACTTACATTACCATTAAAAATGATTTTACAATAAAGTTTgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU702834 True 2583 lncRNA 0.40 1 49298645 49301227

Neighbor

gene id symbol gene type direction distance location
mustn1b mstn1 coding downstream 1340 49295040 ~ 49297305 (-)
LOC110527952 LOC106582936 coding downstream 8841 49275181 ~ 49289804 (-)
LOC110527948 LOC106582926 coding downstream 154492 49136688 ~ 49144153 (-)
LOC110527945 LOC106565815 coding downstream 180807 49115044 ~ 49117838 (-)
LOC110527944 NA coding downstream 210450 49083910 ~ 49088195 (-)
LOC110527953 LOC106582935 coding upstream 1929 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 16357 49317584 ~ 49334930 (-)
LOC110527955 LOC100195900 coding upstream 41131 49342358 ~ 49380684 (-)
LOC110527956 LOC106583046 coding upstream 87810 49389037 ~ 49433382 (-)
LOC110527961 LOC106565835 coding upstream 358795 49660022 ~ 49936575 (-)
G617637 NA non-coding downstream 30512 49205572 ~ 49268133 (-)
G617628 NA non-coding downstream 107087 49191356 ~ 49191558 (-)
G617621 NA non-coding downstream 117074 49180790 ~ 49181571 (-)
G617618 LOC106582928 non-coding downstream 120548 49174363 ~ 49178097 (-)
G617617 LOC106582928 non-coding downstream 125188 49172440 ~ 49173457 (-)
G617730 NA non-coding upstream 112899 49414126 ~ 49414400 (-)
G617875 NA non-coding upstream 241526 49542753 ~ 49542966 (-)
G617876 NA non-coding upstream 241800 49543027 ~ 49543236 (-)
G617877 tmf1 non-coding upstream 242093 49543320 ~ 49543686 (-)
G617878 NA non-coding upstream 242876 49544103 ~ 49544412 (-)
G617632 NA other downstream 102675 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 112549 49184424 ~ 49186096 (-)
G616880 NA other downstream 769477 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 2028574 47260325 ~ 47284791 (-)
LOC110527964 LOC106583033 other upstream 1003221 50300364 ~ 50306278 (-)
G619733 NA other upstream 1655044 50956271 ~ 50958540 (-)
G622985 NA other upstream 4004309 53305536 ~ 53322831 (-)
G625426 NA other upstream 5771252 55072479 ~ 55075396 (-)

Expression


Co-expression Network