XLOC_025429 (BX649540.1)


Basic Information

Item Value
gene id XLOC_025429
gene name BX649540.1
gene type misc
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30248739 ~ 30249036 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050160
GCCGGGCGCAGTGGCGTGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGCGGACCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCTTGGACTACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGTAATACAGCGGGACTCAGTCTTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000087732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050160 True 298 misc_RNA 0.61 1 30248739 30249036

Neighbor

gene id symbol gene type direction distance location
XLOC_025428 akt1s1 coding upstream 48182 30190419 ~ 30200557 (+)
XLOC_025427 kcna7 coding upstream 264871 29980603 ~ 29983868 (+)
XLOC_025426 NA coding upstream 281669 29966783 ~ 29967070 (+)
XLOC_025425 ifi35 coding upstream 299784 29941777 ~ 29948955 (+)
XLOC_025424 BX901883.3 coding upstream 318852 29929582 ~ 29929887 (+)
XLOC_025430 mybpc2a coding downstream 8546 30257582 ~ 30353255 (+)
XLOC_025431 CR936968.2 coding downstream 105732 30354768 ~ 30355587 (+)
XLOC_025432 NA coding downstream 248685 30497721 ~ 30506149 (+)
XLOC_025433 si:dkey-13n23.3 coding downstream 251932 30500968 ~ 30504419 (+)
XLOC_025434 NA coding downstream 394126 30643162 ~ 30655558 (+)
XLOC_025423 NA non-coding upstream 333382 29914444 ~ 29915357 (+)
XLOC_025420 NA non-coding upstream 538517 29687549 ~ 29710222 (+)
XLOC_025419 CT573429.1 non-coding upstream 577086 29664357 ~ 29671653 (+)
XLOC_025435 NA non-coding downstream 445138 30694174 ~ 30695807 (+)
XLOC_025436 NA non-coding downstream 619382 30868418 ~ 30873160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G80831 NA non-coding CI01000013 null 4571764 ~ 4572100 (+)
bowfin (Amia calva) G150475 NA non-coding CM030141.1 CM030141.1 15228957 ~ 15229262 (+)
mexican tetra (Astyanax mexicanus) G68139 NA non-coding NC_035903.1 CM008306.1 32258341 ~ 32265748 (+)