XLOC_025624 (arpc1a)


Basic Information

Item Value
gene id XLOC_025624
gene name arpc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40796110 ~ 40804455 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050469
CGTGTGCCATTTCCTGGATTCCTTGACAGGCCGAAATCAGGGAGCAAGAGAGCAGTCGGAGTGAATTCGTGTCGACTGTCCAGAGTCCGCGAATTCAAGTCCGTCCAGCGTTCAACAACTAGCGAACATCTTTACGAAGATTTGACCGAGAAAGCGGAGCATCTGTTCAGGCAGAGGTGCAAATTCTTTGAAGATAATGTCACTTCACCAGTTTTTGTTGGAACCCATCACCTGCCACGCATGGAACCGGGACAGGACCCAAATTGCTATCAGCCCAAACAACCACGAAGTCCATATATACAAGAAAAGTGGAAATCAGTGGGTGAAAGTTCATGAATTAAAAGAACACAATGGGCACATCACAGgCATTGACTGGGCTCCTAAAAGTGATCGTATTGTGACCTGTGGAGCGGACCGAAATGCTTATGTATGGAGTCAAAAGGACGGCGTGTGGAAACCCACCCTTGTTATTCTCAGGATCAACCGTGCTGCCACGTTTGTGAAATGGTCTCCTCTGGAGAACAAATTTGCAGTGGGGAGTGGAGCTCGACTCATATCCGTTTGCTACTTTGAGTCTGAAAATGATTGgtgggtTAGTAAACACATCAAAAAGCCCATCCGTTCAACTGTCCTCAGTTTAGACTGGCATCCAAATAATGTGCTTCTGGCAGCTGGGTCATGTGACTTCAAATGCAGgGTGTTCTCTGCATACATCAAGGAGGTGGATGAGAAACCAGCTCCAACCCCGTGGGGTTCCAAAATGCCCTTTGGGCAGGTGATGACAGAGTTTGGTGGGGCGGGAAGTGGAGGTTGGGTTCACAGCGTCTGTTTCTCTGCCAGTGGAAACAGATTGGCTTGGGTCAGCCATGACAGTACTGTCACTGTAGTGGACCCCACAATAAGCTCAACGCCGAGTCAGCTGAAAACCGAATTCCTTGCTCTTCTGAGTGTAACTTTTGTTTCTGAGAACAACATTGTGGCAGCGGGTCACGACTGCTGCCCTATGCTGTTCAGTTTTGATGATGGTGGAACCTTGACCTTCACCTCCAAGTTGGACATTCCAAAGCAAAGCATCCAGCGCAACATTTCTGCCATGGAGCGCTTTCGTAACATGGACAAGAGGGCCACCACTGAGGACCGCAATAGCACCCTAGAAAccctgcatcagaacagcatcacCCAAGTGTCTATATATGAAGGAGACAAAAGAGATTGTCGCAAATTCTGCACTACAGGAATTGACGGAGCAATGACCATATGGGATTTCAAGACCTTAGAGTCTTCAATCCAGGGCCTGCGGATCATGTAAAACTGACACTAGCATGACAGCACAAGCAATGCAGCTTGAAGACTAACAAGGAGATTTCCGATAACACTTCtgaaagtttttaaataaaaaaaaagcactgaGCTGTGGTGTGAACTGTTGtgacacttttaaaaaaatggaaaacaCTAATGGAATAAGGGGGTTAGgatctttgttttctttttgttgttggtttttttcctttctttttttttttttttaaggaaaaaaaaatctatgccaAAGCTGGCACCCCAGCAGTGTGTGATGGTTGATTAAGATGTATCGGCTCTCCAGGGAAACCGGAGAGAAGTTAAATTAAAAGGAGAATTTTATGTAAATGGTCTGCTAGAAATAAATGACGTATACTACACACCA

Function

symbol description
arpc1a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005885 Arp2/3 protein complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040116-1 Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

Ensembl:

ensembl_id ENSDARG00000008383

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050469 True 1687 mRNA 0.45 10 40796110 40804455

Neighbor

gene id symbol gene type direction distance location
XLOC_025623 BX649559.1 coding upstream 1231 40791720 ~ 40794879 (+)
XLOC_025622 BX649559.2 coding upstream 107659 40672242 ~ 40688451 (+)
XLOC_025621 fscn1a coding upstream 206621 40576447 ~ 40589489 (+)
XLOC_025620 tnrc18 coding upstream 307264 40407352 ~ 40488846 (+)
XLOC_025619 NA coding upstream 391171 40404169 ~ 40404939 (+)
XLOC_025625 arpc1b coding downstream 4556 40809011 ~ 40820612 (+)
XLOC_025626 mmd2a coding downstream 37442 40841897 ~ 40871366 (+)
XLOC_025627 NA coding downstream 94169 40898624 ~ 40902157 (+)
XLOC_025628 NA coding downstream 140585 40945040 ~ 40948999 (+)
XLOC_025629 NA coding downstream 238568 41043023 ~ 41066414 (+)
XLOC_025429 BX649540.1 misc upstream 10547074 30248739 ~ 30249036 (+)
XLOC_025618 NA non-coding upstream 443702 40351673 ~ 40352408 (+)
XLOC_025609 BX649356.1 non-coding upstream 911154 39884819 ~ 39884956 (+)
XLOC_025606 NA non-coding upstream 1163896 39626833 ~ 39632214 (+)
XLOC_025630 BX537310.1 non-coding downstream 695954 41500409 ~ 41500525 (+)
XLOC_025636 NA non-coding downstream 1150438 41954893 ~ 41962746 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03643306_03647935 ARPC1A coding CI01000046 null 3642182 ~ 3647935 (-)
bowfin (Amia calva) AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding CM030135.1 CM030135.1 13885780 ~ 13902661 (+)