XLOC_025625 (arpc1b)


Basic Information

Item Value
gene id XLOC_025625
gene name arpc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40809011 ~ 40820612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050470
AACGACTAAGGAAATAGTTGAGTTCATTCAGAGCAAAGCCAGCGTTTGTGTTGACTGCTCAGAGTCCACGAACCCAGGCTTCTGTCGCAGGCTTTGTCAGCCCCCCCGCCTCTAGCATCTCTGTGTTTTTACGGTTTCCTGGGAAAAGCGACCATGGCTTATCACAGTTTTCTTCTTGAACCCATCAGCTGCCATGCCTGGAACAAGGACCGAACTCAAATTGCACTGTGTCCTAATAACCATGAAGTGCACATCTACAATAAGGCAGGAAACAACTGGAACAAAATCCACGTGCTGAAGGAACACAATGGCCAGGTTACTGGCATTGATTGGGCCCCAGAGAGCAATCGCATCGTCACCTGCGGCACTGATCGTAACGCATACGTCTGGACCCTGAAGGGAGACGCATGGAAGCCTACACTGGTCATTCTCAGGATCAACCGTGCTGCCCGCTGTGTGAAATGGTCTCCGAAGGAAAACAAGTTTGCTGTGGGCAGCGGCTCACGTCTGATctctgtgtgctattttgagcaGGATAATGACTGGTGGGTGTGCAAGCATATTAAGAAGCCCATCCGCTCCACCATCCTTTGTTTGGACTGGCACCCCAATAATGTCTTGTTGGCAGCTGGATCGTGCGACTTTAAATGCAGGATCTTTTCGGCTTACATAAAGGAAGTGGAGGAGAAGCCTGCTCCAACAGCATGGGGCTCTAAAATGCCCTTCGGAGAGGTCATGTTTGAATCAACAGGTACTTCAGGATGGGTGCACGGGGTCTGTTTCTCTGACAGTGGGAATCGTGTGGCGTGGGCCAGTCATGACAGCACCGTGGCCGTGGCAGAAGGAGGAAAAACTGCAGTCTGTACCAGTCTGACTTCAGAAACCTTGCCTCTGCTGTGCGTGACTTTCATCACTGAGAACAGCCTGGTGGCGGCTGGCCATGACTGCTACCCTGTGTTGTTTGTCTACGATTCCAACAATGCAGCCTTGTCTTTCGGAGGCAAACTTGACGTGCCCAAACAAAGTGCTCAGAAGGGAATGACAGCCAGAGAGCGCTTCCAGAACCTGGATAAGAAAGCCACCACCGAAAGCAAAGAAGCAGTGCTGGAGTCTCTGCACAAGAACAGCATCAGCCAAATCTCACTTCTTGATGGGGGAAAAGCCAAGTGCTCCAAATTCTGCACCACTGGAATGGATGGAGGCATGACTATTTGGGATGTAAAGACCCTTGAATCTGCAATGAAAGACCTCAAGATTGTCTAGATGCTCAACAGACTCAAGAACATGTCTGCTGTCAGATTGCTtgctttaaaaattgtatttttgcaGTTGTCTATGTATTTTATCCAAGATTAAGTTTTGATTACCAGTGTTAGTAGATTAAGGAGTTTATATATTCATACAATTAAGCTTATTGGTTCTGGATAAACTAAAAAAGGGAATTTTGTCTGAATCTAAATGCTGGTCATAGATTGCTTTTCTATAAATTGTAAAAGATAAAGATTTTTGCAAGTAGCTCACATTGAATtctaataaaatgcaataaaacagtTACAATTACATGCTAAATGTTTTCCTACGTCATTACTGCTATTACAATgattattactaatatttacaTGATGCATAATGGACATAAAAAGAAGTACGCCGCTATCTGAAATGAAtgaaaagcagaaataaaaacgTTTAAGACTCTGAA
>TCONS_00050471
TTTTAGGAAAAGCGACCATGGCTTATCACAGTTTTCTTCTTGAACCCATCAGCTGCCATGCCTGGAACAAGGACCGAACTCAAATTGCACTGTGTCCTAATAACCATGAAGTGCACATCTACAATAAGGCAGGAAACAACTGGAACAAAATCCACGTGCTGAAGGAACACAATGGCCAGGTTACTGGCATTGATTGGGCCCCAGAGAGCAATCGCATCGTCACCTGCGGCACTGATCGTAACGCATACGTCTGGACCCTGAAGGGAGACGCATGGAAGCCTACACTGGTCATTCTCAGGATCAACCGTGCTGCCCGCTGTGTGAAATGGTCTCCGAAGGAAAACAAGTTTGCTGTGGGCAGCGGCTCACGTCTGATctctgtgtgctattttgagcaGGATAATGACTGGTGGGTGTGCAAGCATATTAAGAAGCCCATCCGCTCCACCATCCTTTGTTTGGACTGGCACCCCAATAATGTCTTGTTGGCAGCTGGATCGTGCGACTTTAAATGCAGGATCTTTTCGGCTTACATAAAGGAAGTGGAGGAGAAGCCTGCTCCAACAGCATGGGGCTCTAAAATGCCCTTCGGAGAGGTCATGTTTGAATCAACAGGTACTTCAGGATGGGTGCACGGGGTCTGTTTCTCTGACAGTGGGAATCGTGTGGCGTGGGCCAGTCATGACAGCACCGTGGCCGTGGCAGAAGGAGGAAAAACTGCAGTCTGTACCAGTCTGACTTCAGAAACCTTGCCTCTGCTGTGCGTGACTTTCATCACTGAGAACAGCCTGGTGGCGGCTGGCCATGACTGCTACCCTGTGTTGTTTGTCTACGATTCCAACAATGCAGCCTTGTCTTTCGGAGGCAAACTTGACGTGCCCAAACAAAGTGCTCAGAAGGGAATGACAGCCAGAGAGCGCTTCCAGAACCTGGATAAGAAAGCCACCACCGAAAGCAAAGAAGCAGTGCTGGAGTCTCTGCACAAGAACAGCATCAGCCAAATCTCACTTCTTGATGGGGGAAAAGCCAAGTGCTCCAAATTCTGCACCACTGGAATGGATGGAGGCATGACTATTTGGGATGTAAAGACCCTTGAATCTGCAATGAAAGACCTCAAGATTGTCTAGAT

Function

symbol description
arpc1b Predicted to enable actin filament binding activity. Acts upstream of or within T cell differentiation and thrombocyte differentiation. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Is expressed in blood; blood island; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in gastritis; immunodeficiency 71; and myelodysplastic syndrome. Orthologous to human ARPC1B (actin related protein 2/3 complex subunit 1B).

GO:

id name namespace
GO:0002574 thrombocyte differentiation biological_process
GO:0030217 T cell differentiation biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005885 Arp2/3 protein complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7414 Predicted to enable actin filament binding activity. Acts upstream of or within T cell differentiation and thrombocyte differentiation. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Is expressed in blood; blood island; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in gastritis; immunodeficiency 71; and myelodysplastic syndrome. Orthologous to human ARPC1B (actin related protein 2/3 complex subunit 1B).

Ensembl:

ensembl_id ENSDARG00000027063

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050470 False 1702 mRNA 0.45 10 40809011 40820612
TCONS_00050471 True 1129 mRNA 0.50 9 40809892 40820175

Neighbor

gene id symbol gene type direction distance location
XLOC_025624 arpc1a coding upstream 4556 40796110 ~ 40804455 (+)
XLOC_025623 BX649559.1 coding upstream 14132 40791720 ~ 40794879 (+)
XLOC_025622 BX649559.2 coding upstream 120560 40672242 ~ 40688451 (+)
XLOC_025621 fscn1a coding upstream 219522 40576447 ~ 40589489 (+)
XLOC_025620 tnrc18 coding upstream 320165 40407352 ~ 40488846 (+)
XLOC_025626 mmd2a coding downstream 21285 40841897 ~ 40871366 (+)
XLOC_025627 NA coding downstream 78012 40898624 ~ 40902157 (+)
XLOC_025628 NA coding downstream 124428 40945040 ~ 40948999 (+)
XLOC_025629 NA coding downstream 222411 41043023 ~ 41066414 (+)
XLOC_025630 BX537310.1 coding downstream 679797 41500409 ~ 41500525 (+)
XLOC_025429 BX649540.1 misc upstream 10559975 30248739 ~ 30249036 (+)
XLOC_025619 NA non-coding upstream 404072 40404169 ~ 40404939 (+)
XLOC_025618 NA non-coding upstream 456603 40351673 ~ 40352408 (+)
XLOC_025609 BX649356.1 non-coding upstream 924055 39884819 ~ 39884956 (+)
XLOC_025606 NA non-coding upstream 1176797 39626833 ~ 39632214 (+)
XLOC_025636 NA non-coding downstream 1134281 41954893 ~ 41962746 (+)

Expression


Co-expression Network