XLOC_025626 (mmd2a)


Basic Information

Item Value
gene id XLOC_025626
gene name mmd2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40841897 ~ 40871366 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050472
ATCCGGAGTTTTGCTCTCCGCTACTGCCGGGAGAAACTCAGACTGTCTGCTGGGAGTCATTTCCGTTGCGAACATGTAGCTACAAATATGTACAGTATGGATTTCAGGAGGACAAAGCTGGGCAGGTTTATGAACAACCGAGTTCCATCTAGCAAGAGATACCAGCCTACTGAGTATGAGCATGCTGCCAATTGTGCCACACATGGATTCTGGATCATTCCCAGTATCTTGGGCGGCTCAATGTTGCACTTCCTCTCTGATGACCAATGGGAGACCATCTCTGCATGGATGTACGGCATAGGTCTGTCTGGCCTGTTCATTATGTCCACCATGTTTCATACGGTGTCCTGGAAGAAAAGTCATCTTAGAAAGGTGGAGCAGCGATTCCACATGTGTGACAGGATGGtgatttatttctttatagcTGCATCATACGCACCCTGgctgaATCTGAGGGAGCTGGGCCCCTGGGCTGTTCACATGCGCTGGCTGGTGTGGATCATGGCCTGCGCCGGCTCTGCATATGTCTTCTTCTTTCATGAAAACCGAATCGAGAGGGTGTCCTGGAGCTGTCAGTGGGTGGACTCTTCTACTGCCTGGGCGTTGTGTTCTTTAAGAGCGATGGCCTCATCCCATTCGCTCACGCCATCTGGCACGTCTTTGTGGCAGTCGGGGCAGCCATTCACTATTATGCCATTTGGAAGTACCTGTACGCAACTGGGACCTGCCAAATCAAAATATCCAGGTGACAGATGCTGAAGACCTCAAGAGTTCACATACACGGTTCGCTGAGCTATCCACCTTTTTCCTACGTCCCATGTTGCTTTGCATGAAGTATGAGAAGTCAATTAGTCAATAATTGGGTACGATGAGTTGGCGttattcagttcagtttatcCATTGAACATCAAAAGGCGACTTATTAGAATTAACAAATTTCTTTCAGCAGACAATGAATAACTCAAAAAAACTCAATGTTTACTCAAACATCAGACTTCAAGTGAAGTTTCAAAAactcatttcgagaggagcacgtgatatgatttgTGATATGACTACAGCTGGTCAcccatctacaatcattagttagccaatcagattaatccaaactcactataagtagcctagctggaactactcccttaccttcgttttccgtagaaaccccccatccaccccttctcctttACCATGGGGAGCTCTTGAGAACCaactgatctcgtactccccttacatgctctattgaccaggcgggagccctgggctcaaatgtctccaagctcagggttctctcccgggacagcatgccaaacctgctaacatttgtcaaacaatatctaagtgtgaactcttgaaactacaTAAATACAAAAGTCAACCTGGGTCAAAACCTTtcctaaaactattcaacaacacCAATTTTTGTCTAGGGACAGttttgaacaatatttttgatccacttcaaatgttgactaatgtatattttttgttcttcAGATATGGTGTCttacacatttttactgcatatttTTCAACCACCCATGCATTGAATATTAACATACTGAAGGGAATTCAAGGAGaaaaaaatgagaaa
>TCONS_00050473
ATGTACAGTATGGATTTCAGGAGGACAAAGCTGGGCAGGTTTATGAACAACCGAGTTCCATCTAGCAAGAGATACCAGCCTACTGAGTATGAGCATGCTGCCAATTGTGCCACACATGGATTCTGGATCATTCCCAGTATCTTGGGCGGCTCAATGTTGCACTTCCTCTCTGATGACCAATGGGAGACCATCTCTGCATGGATGTACGGCATAGGTCTGTCTGGCCTGTTCATTATGTCCACCATGTTTCATACGGTGTCCTGGAAGAAAAGTCATCTTAGAAAGGTGGAGCAGCGATTCCACATGTGTGACAGGATGGtgatttatttctttatagcTGCATCATACGCACCCTGgctgaATCTGAGGGAGCTGGGCCCCTGGGCTGTTCACATGCGCTGGCTGGTGTGGATCATGGCCTGCGCCGGCTCTGCATATGTCTTCTTCTTTCATGAAAAGAATAAGATCCTGGATCTGCTGTGCTACACTGCTATGGGTTCTGTTCCTGCGGTGGTGCTTCTGTCAATGCCGAATCGAGAGGGTGTCCTGGAGCTGTCAGTGGGTGGACTCTTCTACTGCCTGGGCGTTGTGTTCTTTAAGAGCGATGGCCTCATCCCATTCGCTCACGCCATCTGGCACGTCTTTGTGGCAGTCGGGGCAGCCATTCACTATTATGCCATTTGGAAGTACCTGTACGCAACTGGGACCTGCCAAATCAAAATATCCAGGTGA
>TCONS_00050474
GTTTATGAACAACCGAGTTCCATCTAGCAAGAGATACCAGCCTACTGAGTATGAGCATGCTGCCAATTGTGCCACACATGGATTCTGGATCATTCCCAGTATCTTGGGCGGCTCAATGTTGCACTTCCTCTCTGATGACCAATGGGAGACCATCTCTGCATGGATGTACGGCATAGGTCTGTCTGGCCTGTTCATTATGTCCACCATGTTTCATACGGTGTCCTGGAAGAAAAGTCATCTTAGAAAGGTGGAGCAGCGATTCCACATGTGTGACAGGATGGtgatttatttctttatagcTGCATCATACGCACCCTGgctgaATCTGAGGGAGCTGGGCCCCTGGGCTGTTCACATGCGCTGGCTGGTGTGGATCATGGCCTGCGCCGGCTCTGCATATGTCTTCTTCTTTCATGAAAAGAATAAGATCCTGGATCTGCTGTGCTACACTGCTATGGGTTCTGTTCCTGCGGTGGTGCTTCTGTCAATGCCGAATCGAGAGGGTGTCCTGGAGCTGTCAGTGGGTGGACTCTTCTACTGCCTGGGCGTTGTGTTCTTTAAGAGCGATGGCCTCATCCCATTCGCTCACGCCATCTGGCACGTCTTTGTGGCAGTCGGGGCAGCCATTCACTATTATGCCATTTGGAAGTACCTGTACGCAACTGGGACCTGCCAAATCAAAATATCCAGGTGA

Function

symbol description
mmd2a Acts upstream of or within heart morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including nervous system; notochord; pectoral fin; vasculature; and ventral mesoderm. Orthologous to human MMD2 (monocyte to macrophage differentiation associated 2).

GO:

id name namespace
GO:0019835 cytolysis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-52 Acts upstream of or within heart morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including nervous system; notochord; pectoral fin; vasculature; and ventral mesoderm. Orthologous to human MMD2 (monocyte to macrophage differentiation associated 2).

Ensembl:

ensembl_id ENSDARG00000087446

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050472 False 1594 mRNA 0.44 6 40841897 40871366
TCONS_00050473 False 732 mRNA 0.50 7 40841984 40870521
TCONS_00050474 True 694 mRNA 0.51 6 40856095 40870521

Neighbor

gene id symbol gene type direction distance location
XLOC_025625 arpc1b coding upstream 21285 40809011 ~ 40820612 (+)
XLOC_025624 arpc1a coding upstream 37442 40796110 ~ 40804455 (+)
XLOC_025623 BX649559.1 coding upstream 47018 40791720 ~ 40794879 (+)
XLOC_025622 BX649559.2 coding upstream 153446 40672242 ~ 40688451 (+)
XLOC_025621 fscn1a coding upstream 252408 40576447 ~ 40589489 (+)
XLOC_025627 NA coding downstream 27258 40898624 ~ 40902157 (+)
XLOC_025628 NA coding downstream 73674 40945040 ~ 40948999 (+)
XLOC_025629 NA coding downstream 171657 41043023 ~ 41066414 (+)
XLOC_025630 BX537310.1 coding downstream 629043 41500409 ~ 41500525 (+)
XLOC_025631 card11 coding downstream 687316 41558682 ~ 41632059 (+)
XLOC_025429 BX649540.1 misc upstream 10592861 30248739 ~ 30249036 (+)
XLOC_025619 NA non-coding upstream 436958 40404169 ~ 40404939 (+)
XLOC_025618 NA non-coding upstream 489489 40351673 ~ 40352408 (+)
XLOC_025609 BX649356.1 non-coding upstream 956941 39884819 ~ 39884956 (+)
XLOC_025606 NA non-coding upstream 1209683 39626833 ~ 39632214 (+)
XLOC_025636 NA non-coding downstream 1083527 41954893 ~ 41962746 (+)

Expression


Co-expression Network