LOC110529641 (LOC106571433)


Basic Information

Item Value
gene id LOC110529641
gene name LOC106571433
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23527630 ~ 23582982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612024.2
GAGAATTGAGGGAAAAGCTGCTTGTTGCGTAGAAATTAATGTAAGCGTCTACTTCCTTCCTGCTTTTTGAAGTACACTAAGCAAACATCGGCCTAGTACTACGCCAAAGCGAAGGGttgaagaagtcaaggggtcatAAGAGCAAGTATTTTGGACACGCTGTGGGAGAAAAAGTTTATTTATACTTGAACTGGCCTTCCTTTTGCTTGTGAGGGAATAAGGAGATTGTGTGCTATGTGAAATCCGCTTAATTTAAGAGATGTTTAGTGTTCTGAATCGCGCTGAATTGCACTCAGTGCTGTAGACATTCTGAACGGCTTTGAGGGTTGGACAGCCACGGGTTCGATATAGCAGGACTCCTATTAGGACGAGGTGTCTGTCAGTACAAGAATATTTAGCAGGGaattccacctctcctctcacaTACCCCACCAAATGCTATGGTGGGGTGTAGACACCAGAGCAGCAACCAGGACTAGGGCTAGATGGGAGCCCATACTGACAGTGCCAGCCTGATACTATGGCTGCTTCTGCCCTGAGCAGTCTGATTATGATGAATGGCAACAATCTGACGAGTGCGAGCAGCCCTCGGACTGGGAGGCCTGTGCTGCATGTGCCAAACCGTTCCACCTACTACAGCCCTGGTAGCCTGATTCCTGGCTCCCCTGGGGGCTCCTtcgtctccccctcctctccaggcCCCAGCAGCCCCAGGGCCCGCTCCCCCTGCCGCCACCCTGAAACCTTGGGGGAGATCGTGGGCAACTGCGTCCGCCGGCTCAGCAACAATGGAGATGATGAGGCCTCCAACTGGGAGGTGAAGCGCACGGTGCAGCTCCTGCAGATCCACCAGGAGCTCCTGAATGTGGAGGTCAACAAAAAGGTGGGTCTGTTTGAGGCCCACATCTTGAGGGGCCCGTGCAGAACAGTCCCAGCCTCCAAGCCCAGCCAGCCCGCCGAGGTGCCTCCCCCTAACCCCCCACAGAGAGACTGCCCTCCAAGCATTTCCAAGGAGCTCCAGAATGGGAAAGGGTGTCTCTGCTTGGAGGAGGGAGTAACAGGGAACGGCAGAGTGGAAAATAACACGACTGACCCAAATACGGAACAGGGCAGTCTGCTTGTGAACAAATCAGCAGGAACTTGGGCCCAAGCTGACAGTTCAGCAGGCAGTTATTCCCCAAGTTCACTGGGGGTTGGCAGCTTCTTGGCAGGCAGCAACAGCGAGCACCCTGTGGAGTGGGCCCAGACCTGCCTGACAAAGGCAGGAGCAGAGCCAACGGAAACCCAGCCACAAGCACCCTGGGCCAGCAGGGAGGGGAGCTACCCAGAAGTGGGGACCACCATCCCAGCCGTCATAGTCACCGACCACGGGATGGAGGCCCAGGGAGAAGGCTGTGATCCGGGCAGTGAGCCCCAGCAGAGCCCCGGGTCAACCCGAGGCTTGAGGAAGCTGTCCTCCTCCTCAGCTTCCTCCACaggcttctcctcctcctgggaGGAATCAGAGGATGACATCTCCAGCGACCCGGATAGAGCCGAGGGACTGTCACTTGCCTTCCTCAACACCCAGCAGAGAGCTCACAAGTCATGGAAGAAGATCAAGAACATTGTCCACTGGTCTCCATTCGTCATGTCTTTCAAGAAGAAGTACCCTTGGATCCAGCTGGCTGGTCATGCAGGCAGTTTCAAGGCAGGGGCTAACGGGCGTATCCTGAAGAAGCACTGTGACTGTGAGCAGCGCTGCTTGGATTGGCTGATGAAAGACGTGCTGCGTCCCTACGTACCGGCCTACCACGGAGACGTGGAGAAGGACGGGGAGAAGTACAACCAGATGGATGATCTGCTCTCTGAGTTCGACCTGCCCTGCGTCATGGACTGCAAGATGGGTGTCAGGACGTACCTGGAGGAGGAGCTGACCAAGGCCCGTAAGAATACCAGTCTGAGGAAGGACATGTACCAGAAGATGGTGGAGGTGGAACCCCTGGCGCCCACCCCCGAGGAGCAGGAGCAGCAGGCGGTCACCAAGCCCCGCTACATGCAGTGGAGGGAGACCATCAGCTCCACCGCTACCCTGGGCTTCCGCATCGAGGGCATCAAAAAGGAAGACGGGACGGTAAACAGAGACTTTAAAAAGACCAGGAGCATGGAGCAAGTGACAGAGGCATTCAACGACTTTGTCAAAGGAAACCAGAACAtcctgAACTGTTATCTGCACCGACTGAAGGACATTAGGGACACTCTGGAAATATCAACCTTCTTCAAGACCCACGAGgtGATTGGCAGCTCACTGCTGTTCGTCCATGACAAGCGTGAGCAGGCCAAGGTGTGGATGATAGACTTTGGGAAGACTACCCCTCTGCCTAAAGGACAGGTCCTGAGTCACAGGGCCACCTGGGAGGAGGGCAACCGCGAGGATGGCTACCTCTATGGCCTGGACCACCTCATAGACATTCTCACCCACATGGTGGTGACCCCAAAGCCAGACTCACTCTAAAAAGGGACTGTCCCCCCCCTCAACTCAATCCTAACCCCGACAGGACCACCACCTCGCACTACAATGACGCCTCTGATGTCCCCAAAAagctacccctccctcccttatTCCCCTTCTCCCCTGGCCCCAGATATCAAACTGTAACCACACAAGTGTTTTGTGTAAACTTGTAGATTCTGTACATACTGCTGTACAGTGTGTTTCTGTTCTGATGAGACCATGGGTTAGGTTAGGTTCCTTCTCTGCAGCTAGTCTGTGACAACCCTTCTTGAGattttagtttgttttgttttataacAGTTTAAGAATATATTTTAGTGTTAGCTAACAGTGTGTATCACTGCAGTTACAACTTCTATGGTGCATGGCCTTGTGGTAAAAGCCAAACATTTGAAATAGTTGCATTCAGAATTGTGGCACTTCCTGTGTTTATAAACTTATATACAATTTAAGATTTACAGAAAATGTCCAGGGtcaggtagcctggcgggtaggagcgttgggcagttgctggatcgaatccccgagctgaccatgtaaaaatctgttgttctgagcaaggcagttaacccactgttccccgggcgccgtggatgtcgattaaggcagccctctgcacatctctgattcagaggggttgggttaaatgcagaagacacatttcagtagaATGCATTCCGTTGTAATATTTGTAATACTATTTGTAATATTCCCTTGCTGAATTTTCCAATGTTTATTATTCATTTGTACCTCATTATGTAATAGTGTACTTGAGACTGTGCTGTGCCTATATTCATTCCAGTTTCTTTGGAGGGAAAGTAGAGAAGGTGGTATAAGTTAATGCACTCCGAAATGTAATTATGACCTATTTTATTAAGGCTAATGTTGACATTCCTGTAATCCAAACCATTGAAGAGTGACTGTCAGTTCAGAGGTCAATGTACATGAAGCAGATGGAGTGGGCGACTAACAGGAAACGGCTCTTAACCAAGTGAGAATGAGTTTGCATTCTAAATATGCCAAGTGCCTCAGCCTTTCAGCAGACATAAAAAgaccagggcccggtttcccaaaagcatcttaaagggatacttcgggatctTGGCagtgaggccctttatctactttgaCTCAGATCAACTAGTGGATACCATTTTCATGTTTTTGTGTCCAggatgaaggaagttagaggtagttttgtgagccaaagctaactagcgttagcgcaatgactcaaaagtctatgggtatctgctagcatgctagtaccCTATGGTTCTAAGATGAACTTAgtcttaagatgcttttgggaaaccgggcccaggttTTATTATCTTATTTTAATGATTCCATTAGTCAGAGATGACATCACCTGTGACTCCGTCATTAATGTATATCGTCTACCACTGTACACCCATAATAATCACGGCTCTTAGAATGAACCCACCCCATCCTGTTTTCCTAGGATCCTGTTATTGTGCACAAGACAGATGGTGATTGCTGTTTGCATGGCAATTTGACATTCATATATACCATTCCTGCCTGATGCCCAAACATCCTGAGGTGGCAAACAAAACGAATGGGGTgttgtctgtctactgtctatttATTaagtctacagacagagagataggcatTTAACAGATCAACATTGTCATCATTGTCTGTTTGGATTCAATTAGCATTGAGTCATGTTTTTGATCACAGTCGGATCACACGCGCATGACATTGACCATAGAAAGAGTAACTTGCATGGTATGGGAGCTTTTTATGGGCGTTAATACCCTTTTTTAATAGTTTACTTTAGGGTTTAATAGTCATTCACCTTTAATAGCCATATCACATACAATAGTCCTAGTTATGAGAGTGAGGTGAGGTTGGCCTTGTTTTGAAATGACTGTTCTCTCACCTATATCTAAGGAACTGAGAGGGGTGTGGTGTGTTAGGACTGCAAACATCATGTCCTAAAGAAACAGCTCACTTCTCCATGGCCTTTAATGGGTGGAGCTTGAGGCAGTTGATTCTAGCAGGACAAACTGGACCAATAGTTTTGACCAATACCCAAGGTGTAAAACTTTGTTCTTTACGTGTCCTGTCTTTGAGTGCCATTGAACTACTTTACCTTTGCATCAGGGTTATCAACCTGAAACGTttcaaaataaatacagtttggTATGTTAAAGTATGACTTGATATTAATggcctgcactgttggagctcggagcTTAAGATGTTCACTGTACCCTGCATTTACATCTGcaaccctgtgcatgtgactaatacactTTCTGAATCTAAATCTAATGTGATGTACAGGATTGTGGTGCGTTTGCATGAGAGTGATACTATCGGCCCATTGCACTGGACCAGAAAGGACAGAAATAAAGAGTAGAGTGCCCTCTGCTGTTACTGAACTGTATTACATTGAGCAGCATAAAACAAATGACATGGGTGCATTTTCCAGAAACACATTGTGACTTTGATTTTAATATGTTGCCTTTATTCTCTTACTTCAATATTTCTTCAGTAGCTTCTTTCAAATCCCTCCTCTGTCGTTGTGCTTGTCGTTTTTGTGAAGTCTCTTAGAATGATATACTCATGACCATATTTATTTCTTTGTGACATTTGCACAAGAACACTAATGcatgtgttttcatttttgttgAAAGTCAGACATGATATAATCATTTAGTAAGTCACTGTAATATACAATGGTCACTGCTTCTTACAATGTGTaaataatactgtatgttttagAGATGAACAAGAAGTCTGTGTTCTGTGCACTCTACCAGGCGTTCTTTTGTGCCTTGTGACACCTATGATCTGTATAGACCTGGTTTTGGGCTACGCTGGCCAAAGAGTGGTTGACATGGAGATTGCCATAGCAACCTCATCTGTCATCCCTGGTCCAGGTTGACATGATTGAGTCATTCCTCTCCCAGCCTTGTGCTGTGACACTGTGGGGACATTGCGCCTGAGATCCTCTGCAGGGTTGGGGTTCATTCCAATTTCATTTGGAATTCTTTAATTCGCTCATGAAGTGGAGAGTTAATTCAGCTATCTTCAAGTTATGTAATTGCAATTGAATTGAAATGATATTGTTTGGACTGTTTGAATTTAAATTGAATTGGCATTGGAATTCAATATTGGTACATTTCCTAGTAAATTGAATTAATGCACTTAGTATCAAACATTGACCGCAGGATTTGTTTGAAATAATTTCAActtatatttctatatttccaatatagctaggctgtctgaacagtgacatGATCTGAAAGCCTGAGGAAATTGAATTTGAATTGGAATGTGGGAATTGTTGGGGATAATATTGAATTATCTCCGAATTCAAAGACTGACCTGGAATTTTTATTGAATGAAATGGAATTTACAGGGAGTTGTGGAACAAATCCCACCCCTCGTCTTcaggtcattgtgctgtctccccATGGATCTGCTCATGTAAATCATGCCATCATGTCAATACTGCAAGCAAAAATATGCTTGACTGTACCATTTTTACTGTAGTAAATTTGAACAATTGCTTAAACGCTA
>TU783268
AGCTCACTTCTCCATGGCCTTTAATGGGTGGAGCTTGAGGCAGTTGATTCTAGCAGGACAAACTGGACCAATAGTTTTGACCAATACCCAAGGTGTAAAACTTTGTTCTTTACGTGTCCTGTCTTTGAGTGCCATTGAACTACTTTACCTTTGCATCAGGGTTATCAACCTGAAACGTttcaaaataaatacagtttggTATGTTAAAGTATGACTTGATATTAATggcctgcactgttggagctcggagcTTAAGATGTTCACTGTACCCTGCATTTACATCTGcaaccctgtgcatgtgactaatacactTTCTGAATCTAAATCTAATGTGATGTACAGGATTGTGGTGCGTTTGCATGAGAGTGATACTATCGGCCCATTGCACTGGACCAGAAAGGACAGAAATAAAGAGTAGAGTGCCCTCTGCTGTTACTGAACTGTATTACATTGAGCAGCATAAAACAAATGACATGGGTGCATTTTCCAGAAACACATTGTGACTTTGATTTTAATATGTTGCCTTTATTCTCTTACTTCAATATTTCTTCAGTAGCTTCTTTCAAATCCCTCCTCTGTCGTTGTGCTTGTCGTTTTTGTGAAGTCTCTTAGAATGATATACTCATGACCATATTTATTTCTTTGTGACATTTGCACAAGAACACTAATGcatgtgttttcatttttgttgAAAGTCAGACATGATATAATCATTTAGTAAGTCACTGTAATATACAATGGTCACTGCTTCTTACAATGTGTaaataatactgtatgttttagAGATGAACAAGAAGTCTGTGTTCTGTGCACTCTACCAGGCGTTCTTTTGTGCCTTGTGACACCTATGATCTGTATAGACCTGGTTTTGGGCTACGCTGGCCAAAGAGTGGTTGACATGGAGATTGCCATAGCAACCTCATCTGTCATCCCTGGTCCAGGTTGACATGATTGAGTCATTCCTCTCCCAGCCTTGTGCTGTGACACTGTGGGGACATTGCGCCTGAGATCCTCTGCAGGGTTGGGGTTCATTCCAATTTCATTTGGAATTCTTTAATTCGCTCATGAAGTGGAGAGTTAATTCAGCTATCTTCAAGTTATGTAATTGCAATTGAATTGAAATGATATTGTTTGGACTGTTTGAATTTAAATTGAATTGGCATTGGAATTCAATATTGGTACATTTCCTAGTAAATTGAATTAATGCACTTAGTATCAAACATTGACCGCAGGATTTGTTTGAAATAATTTCAActtatatttctatatttccaatatagctaggctgtctgaacagtgacatGATCTGAAAGCCTGAGGAAATTGAATTTGAATTGGAATGTGGGAATTGTTGGGGATAATATTGAATTATCTCCGAATTCAAAGACTGACCTGGAATTTTTATTGAATGAAATGGAATTTACAGGGAGTTGTGGAACAAATCCCACCCCTCGTCTTcaggtcattgtgctgtctccccATGGATCTGCTCATGTAAATCATGCCATCATGTCAATA
>TU783269
CCCAGACCTGCCTGACAAAGGCAGGAGCAGAGCCAACGGAAACCCAGCCACAAGCACCCTGGGCCAGCAGGGAGGGGAGCTACCCAGAAGTGGGGACCACCATCCCAGCCGTCATAGTCACCGACCACGGGATGGAGGCCCAGGGAGAAGGCTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612024.2 False 6055 mRNA 0.46 8 23527630 23582982
TU783268 False 1518 lncRNA 0.39 1 23527699 23529216
TU783269 True 155 lncRNA 0.65 1 23579575 23579729

Neighbor

gene id symbol gene type direction distance location
galnt14 LOC106571428 coding downstream 161839 23260188 ~ 23365791 (-)
angel2 angel2 coding downstream 268508 23253587 ~ 23259122 (-)
nsl1 nsl1 coding downstream 325397 23199511 ~ 23202233 (-)
batf3 LOC106571544 coding downstream 329380 23192564 ~ 23198250 (-)
adat2 adat2 coding downstream 376381 23146458 ~ 23151249 (-)
LOC110529643 LOC106571435 coding upstream 31956 23614938 ~ 23659111 (-)
LOC110529644 NA coding upstream 95849 23678831 ~ 23682862 (-)
LOC110529645 NA coding upstream 111479 23694461 ~ 23732156 (-)
LOC110531080 LOC106571440 coding upstream 209017 23791999 ~ 23805391 (-)
trim54 LOC106571441 coding upstream 300088 23883070 ~ 23908520 (-)
G687210 NA non-coding downstream 3592 23520461 ~ 23524038 (-)
G687197 NA non-coding downstream 45351 23481956 ~ 23482279 (-)
G687184 NA non-coding downstream 63875 23463545 ~ 23463755 (-)
G687174 NA non-coding downstream 76699 23450581 ~ 23450931 (-)
G687155 NA non-coding downstream 105451 23421666 ~ 23422179 (-)
G687920 NA non-coding upstream 39397 23622379 ~ 23622645 (-)
G687921 NA non-coding upstream 40163 23623145 ~ 23629792 (-)
G687931 NA non-coding upstream 80378 23663360 ~ 23663624 (-)
G687932 NA non-coding upstream 81255 23664237 ~ 23664509 (-)
G687934 NA non-coding upstream 82979 23665961 ~ 23666177 (-)
G685953 NA other downstream 1366588 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1602722 21920427 ~ 21926307 (-)
G684844 NA other downstream 2048427 21478766 ~ 21479203 (-)
G681659 NA other downstream 4735493 18791230 ~ 18792137 (-)
G679471 NA other downstream 6413102 17113543 ~ 17114528 (-)
G687890 NA other upstream 52327 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 171850 23754832 ~ 23756910 (-)
G688109 NA other upstream 405117 23988099 ~ 23988854 (-)
G688366 NA other upstream 842081 24425063 ~ 24425553 (-)

Expression


Co-expression Network