LOC110529713 (l3hypdh)


Basic Information

Item Value
gene id LOC110529713
gene name l3hypdh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26591530 ~ 26596738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985194.1
CGGAAAGAAAGGAACGGAAATTTAAGCAGCGTTCCATGAACGTAAATAGCAGGATTGGATCTAAGAAAGTAGATGGAGCTTCCACCCCACGAAGGATCGGTACTCTCTGTGGTTGACATGCACACAGGTGGAGAGCCTTTGCGCATTATCCTTAGTGGTTACCCAGAGGTAAAGGGCGAGGGTGTGCTATCCAAACGGCGCTACGTGAGAGAGCATCTGGACTACCTACGGAGAGTGTTGATGTTCGAACCAAGAGGACACTATGACATGTACGGAGCCCTGGTCGTGGAGAGTGAGATACCTGAAGCCGACTTGGGGGTTCTTTTCATGCACAACGAAGGTTACAGTAccatgtgtggccacgcagtcatcgCTCTTGGGAGGTTTGCTGTAGACTACAAACTTGTTCAAGAGCCAAGGTCGCCAGAGACGCAGGTGAATATACACTGTCCATGTGGCCTGGTTAAGGCATTTGTGGAGTACTCCAATGGTAAAACCGGAGGTGTGAGGTTCCACAGTGTTCCAGCGTTTGCATTTGCAACAGATGTAATTGTTGCTGTGCCTGGGCATGATGAAGTCACTGTTGATATAAGCTACGGAGGAGCATTCTACGCATTTGTAAGTGCAGAGCGATTTGGCCTGGATATCAACAAGTCCAAGACCAGGGATCTGGTGGATGCAGCTACTGCAGTGACCAACTCTGTCAAATCTCAGGTAAAACTGCATCACCCAACCAGTGAGGACCTGGCCTTTCTCTATGGCACCATCCTCACAGATGGAAAAGATGCCTATTCCCAAGAGCCCACTGCtaacatgtgtgtgtttgcagatGCCCAGGTGGACAGAAGCCCTACAGGTTCAGGGGTCACTGCCCGTGTGGCTCTCCAGTATCATAAAGGCCTCATCCAACTCAACCAGACTAGGACCTTCCAGAGTGGGGCCACAGGATCTCTGTTCACTGGCAAAGCTGTTCAGGACACCACATGTGGAGACTTCAAGGCTGTGGTGGTTGAGGTGGCTGGCAGAGCACACTACACTGGCGTGGCCAGCTTTGTGCAGGAAAGTGACGACAAGCTAAAACTTGGTTTCCTGCTGAAATAGGAGCAGCTACCAGTGCCCACAACCACTTTTGAGTGCATCTCCATCCAAGCAAAGGACCATATCAGATTGCAAAtcaattgtaaaaataaaaaaaaacacacaaaaaacccATCACTCATTGAAGGCCTATGTAGCATCGGTAATGGTCATAAgtattgtgtgtactgtatgcacAGAGTCTGACATAAGAGACATGGCAGACAAGGCTGTTGGAATTCCCTCAAacatctgaatggttaaggtcaacTTCCATGAGCAGGTGTCCAATATAACAAAGTTTGCTCCTGTCCTGTAGTGGTCATAAACACAAAATTAACTAAAAAGTGTTAAGTAGGATAactttggtcataaagtcagtctttaAGGAAACAATGTCTCAGATTTCTTGGATATTTGAGGATTGGGTTTTGATTTCAGTCATGCCCAGTCATCGCCTGGTACAAAGCGATGGGAGAGCTGTGACACACTGGTCTGGACAGGAGTCAGTTTGTTGGTGCAATATACACGCAAAAATTGTTTGAACTTTGATTCTCTCAAACATTTTTCCCCCT
>XM_036985193.1
AGccattgattaaaaaaataattatttttgacttttattttgaagtttGCATTTGAATACCGGAAAGAAAGGAACGGAAATTTAAGCAGCGTTCCATGAACGTAAATAGCAGGATTGGATCTAAGAAAATGGAGCTTCCACCCCACGAAGGATCGGTACTCTCTGTGGTTGACATGCACACAGGTGGAGAGCCTTTGCGCATTATCCTTAGTGGTTACCCAGAGGTAAAGGGCGAGGGTGTGCTATCCAAACGGCGCTACGTGAGAGAGCATCTGGACTACCTACGGAGAGTGTTGATGTTCGAACCAAGAGGACACTATGACATGTACGGAGCCCTGGTCGTGGAGAGTGAGATACCTGAAGCCGACTTGGGGGTTCTTTTCATGCACAACGAAGGTTACAGTAccatgtgtggccacgcagtcatcgCTCTTGGGAGGTTTGCTGTAGACTACAAACTTGTTCAAGAGCCAAGGTCGCCAGAGACGCAGGTGAATATACACTGTCCATGTGGCCTGGTTAAGGCATTTGTGGAGTACTCCAATGGTAAAACCGGAGGTGTGAGGTTCCACAGTGTTCCAGCGTTTGCATTTGCAACAGATGTAATTGTTGCTGTGCCTGGGCATGATGAAGTCACTGTTGATATAAGCTACGGAGGAGCATTCTACGCATTTGTAAGTGCAGAGCGATTTGGCCTGGATATCAACAAGTCCAAGACCAGGGATCTGGTGGATGCAGCTACTGCAGTGACCAACTCTGTCAAATCTCAGGTAAAACTGCATCACCCAACCAGTGAGGACCTGGCCTTTCTCTATGGCACCATCCTCACAGATGGAAAAGATGCCTATTCCCAAGAGCCCACTGCtaacatgtgtgtgtttgcagatGCCCAGGTGGACAGAAGCCCTACAGGTTCAGGGGTCACTGCCCGTGTGGCTCTCCAGTATCATAAAGGCCTCATCCAACTCAACCAGACTAGGACCTTCCAGAGTGGGGCCACAGGATCTCTGTTCACTGGCAAAGCTGTTCAGGACACCACATGTGGAGACTTCAAGGCTGTGGTGGTTGAGGTGGCTGGCAGAGCACACTACACTGGCGTGGCCAGCTTTGTGCAGGAAAGTGACGACAAGCTAAAACTTGGTTTCCTGCTGAAATAGGAGCAGCTACCAGTGCCCACAACCACTTTTGAGTGCATCTCCATCCAAGCAAAGGACCATATCAGATTGCAAAtcaattgtaaaaataaaaaaaaacacacaaaaaacccATCACTCATTGAAGGCCTATGTAGCATCGGTAATGGTCATAAgtattgtgtgtactgtatgcacAGAGTCTGACATAAGAGACATGGCAGACAAGGCTGTTGGAATTCCCTCAAacatctgaatggttaaggtcaacTTCCATGAGCAGGTGTCCAATATAACAAAGTTTGCTCCTGTCCTGTAGTGGTCATAAACACAAAATTAACTAAAAAGTGTTAAGTAGGATAactttggtcataaagtcagtctttaAGGAAACAATGTCTCAGATTTCTTGGATATTTGAGGATTGGGTTTTGATTTCAGTCATGCCCAGTCATCGCCTGGTACAAAGCGATGGGAGAGCTGTGACACACTGGTCTGGACAGGAGTCAGTTTGTTGGTGCAATATACACGCAAAAATTGTTTGAACTTTGATTCTCTCAAACATTTTTCCCCCT

Function

symbol description
l3hypdh Predicted to enable trans-L-3-hydroxyproline dehydratase activity.

NR:

description
trans-3-hydroxy-L-proline dehydratase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0018112 proline racemase activity molecular_function

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985194.1 False 1652 mRNA 0.47 6 26591530 26596678
XM_036985193.1 True 1708 mRNA 0.46 6 26591530 26596738

Neighbor

gene id symbol gene type direction distance location
LOC110529710 LOC106571501 coding downstream 128169 26444117 ~ 26463361 (-)
cenpw LOC106571497 coding downstream 160642 26428702 ~ 26430888 (-)
LOC110529708 LOC106571496 coding downstream 165456 26422495 ~ 26426074 (-)
LOC110529703 LOC106571490 coding downstream 415891 26172446 ~ 26175639 (-)
LOC110531082 pgm3 coding downstream 469250 26120465 ~ 26122280 (-)
LOC110529714 LOC106571503 coding upstream 2292 26599030 ~ 26602934 (-)
LOC110529723 NA coding upstream 574200 27170938 ~ 27186859 (-)
esr2a erb1 coding upstream 647821 27244559 ~ 27284491 (-)
LOC110529724 NA coding upstream 690377 27287115 ~ 27308032 (-)
LOC110529221 NA coding upstream 1018262 27615000 ~ 27616094 (-)
G690801 LOC106571494 non-coding downstream 205804 26384583 ~ 26385726 (-)
G690783 NA non-coding downstream 230215 26361027 ~ 26361315 (-)
G690780 NA non-coding downstream 234978 26356322 ~ 26356552 (-)
G690776 NA non-coding downstream 238791 26352414 ~ 26352739 (-)
G691008 NA non-coding upstream 118479 26715217 ~ 26715507 (-)
G691010 NA non-coding upstream 122906 26719644 ~ 26719843 (-)
G691038 NA non-coding upstream 161402 26758140 ~ 26766768 (-)
G691054 NA non-coding upstream 197671 26794409 ~ 26794617 (-)
G691056 NA non-coding upstream 198099 26794837 ~ 26795095 (-)
G690073 NA other downstream 600387 25990678 ~ 25991143 (-)
G690033 NA other downstream 626037 25965179 ~ 25965493 (-)
LOC110529694 LOC106571481 other downstream 786055 25801320 ~ 25805570 (-)
G689810 LOC106571475 other downstream 926865 25664165 ~ 25664665 (-)
G691447 LOC106571509 other upstream 267472 26864210 ~ 26868078 (-)
G691747 NA other upstream 718830 27315568 ~ 27315935 (-)
G692859 NA other upstream 1518998 28115736 ~ 28116048 (-)
si:dkey-85n7.8 NA other upstream 1882079 28478817 ~ 28481944 (-)
G693383 btbd7 other upstream 1996603 28593341 ~ 28594431 (-)

Expression


Co-expression Network