LOC110529732 (LOC106571705)


Basic Information

Item Value
gene id LOC110529732
gene name LOC106571705
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28011797 ~ 28023925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612201.2
GCAGCCTCTCCCCGCTTGGCTCGATGGCATATTTAGGGATTTTGCCAACGCAACCATATATGTACACAGTCATGTATCCTTAACCTTTTTTCAACTGACTCTCTTATTTGTTCATTAAATCGGCCTTTATTCATATAATGCGTAATCCAGGAATGTAACGACTTAATTGGCACGAGAAAACTCGAGAAAATAGCAACTGCACAAATCGCAATGACTACAATGAATGGCTAAATTACTTCCGGACACTAAGGTTCCGCGGAGCTCCTCCTCACTATTCTTTATATTAGCGACACCCATTCAGTAGATATTTGAGCATTTTTAGTTATCTGTTCATGTAGTAGATTGGAATGCAAAGTTTGTTTGCTCAAGTGGTGTCCACTGTCCAGTGCATCAGGGGGAGTTTTAATTGCTGGTGCAACCTATATAGTGGGCTGATGCATTGCCGAAACGTCCAGACTGGAACCAAACAATGGACAGAGTAGGCTGCCCTGCACGGGTGTCACACCAGTCCTTGATGGCAGCTgcagtgtctgtgggttttcctTTCTCCATTGCACTTAACTGATCAGCCAATGTTATTGATTTGAGGCCAACGTACACCAGTGATGTACTATATTAGTTAATGTGCAACATCCTGAACTTTACAGATAGAAATGGAATGAATAGGTTCTAGACGATTCCCATTTCTAGATGACAGAAAAGTTTTATGCAGAATACATTTTGTCTATCTGAGCATACGGTAATGTTGCAGCTGAACAGGGCCCTTGTTCTAAATTAGACACTGACTAAAAGGGAAAAAGGAATACCTGAATCGTGTTCATTAGCGCATACTgtagaaaaacattttaaaataggAAACACAAACAAGCTTATTAAACAACATTTCACTCCGTTTCGGGTCACTGTCTTCCATTGCgtgcctactgaacatgacccagcaGACACTGCAGCAGCCCTCCAGGTATTGAGCCCAGCTGTACAGGCATAAGCCCTGCAGGGTTTTAGTATGGCTTCAGAGAAGATGGATGATTGCAGTGGGACACTGGGGCTGAATGTTTAcgtcaaagaggaggaggaagaggtgcaGGTGGAGGATTTCACAATGAAGGACAAGGAGGCATTcacagtgaaggaggaggaggaagcttTCACAGTGAAGGAAGAGGTGTTGACTTTCACATTTaaaaaagaagaggaagaggtttcaacagtgaaagaagaagaggacgaggTTATCACAGTGAAAATTGAGGAGGGTGGAGCAGAGAGGCCTAGCCCCAGCACCGAGACTAAATGGGGCTCGAAGAGTGGAAAAAGTTCGATACAGGAACTGGACTGGCGAGCTCCTGTGGAGAAACCTCACTGCTGTTCCCAGTGTGGCAAAACATTCTCAGAGTCCGGAAACTTGAAGCAGCACATGCGGACGCACAGCGGAGAGAGACCTTACCACTGCTCCAAATGCGGGAAACGTTTCATACAATTGGGACACTTCAACAGCCACCAGCGCACGCACACGCAGGAGAAACCGTTCAGTTGCGGTGAGTGCGGGAAGAGTTTCTCTCAGAGAATCAATTTGAAGAAACACCAGCTCACACACTCCGGTGAGAGGCCTTTCCtgtgctctgactgtgggaagagtttctcttCATCTACCAACCTAAAAAGACACCAGAGCACGCACAGCAATGAAAAGCCTTTCCAGTGCACCAACTGTGAGAAAAGTTTCACTCATATACACCACTTGACACGTCATCAGACCGTACACACTGGGGAGAAACCTTACacttgctctgactgtgggaggAGTTTCTCCCTCCAGGGGACTTTAAAGAAACACCAGCGcacacacactggggagaaaCCGTACCAGTGCTTGCTCTGCGGGAAGAATTTCTCTCTTTCGGTGGCACTGAAGAGACACCAGCTCatgcacactggagagaaaccgtaCCAATGTTCTCAATGCGGGAAGAGTTTCACCCAAAAGGGACAATTAACTCAACACCAGGGCACACATGAACTAGAAAAGCCTTACCcctgctcccagtgtgggaaAAGTTACTCCTCAGCCCCCTCATTAAAAGCACATCAGAGGACTCACAAAGAGTCAACGTCACTCGCAATGACAGCACATTTCAGAAAGTAAATTATTGaactggttgtctctgattgggattgATAGCCTACATTTGAAACTATAGATTGTGCCTTAAATGCTTTGTCATGTTCAAACAAAACTCTTAGTCCCAATTTCATTTTCTCCCTGAAATGTTCACTTGCACACTCCTTACAGATTTAAAAGGAATGGACTGGTTTGCATTCAGTACCACAGAATGGTGAGCAACCTTGAATTCAATGGAAACGGCACTTAAAAACTTTAAGCCATTTGCAACCATCGATGGCCACCAGATTATCGCCAGCTGATCTTTAGTTAAACCAATAATTGGCGCTAAAATCACCTACACAGCTGATCTCAATTGCAACCATTATTGGACACCATTACCTCTCCCTAAAGTGGATGTTGGGCTTTACTCTTAGTTCTGATTTTAAGACTATTTTGCCCTCTGTTGGGTATTATCATCAGAACAATTGAATCCtgttattattattcttttttgcAGATTCAAGGTGATTTTAATCAATTTGACAATCATTCCATACAAGTAAAGTATTTAATTTTCTTGTTTTCCACAGCAAATCTTCTATGGCAGTGTAGCCTACCCTACACATTTTATGATTGGAAAAATCATGGTGTAGGATACATTTATTTCCAATTTATGTAATCCATTAATTATTTAACTTGTCTAAATAAAatatgcaatttttttttccatCAAGAGAGGTGAAGAACATTTTCCTGAACTGTAGGATACACATTTGAAACAGTATTGTAGGcaattttata
>XM_036985224.1
GGACAACGGGCAGCCTCTCCCCGCTTGGCTCGATGGCATATTTAGGGATTTTGCCAACGCAACCATATATGTACACAGTCATGTATCCTTAACCTTTTTTCAACTGACTCTCTTATTTGTTCATTAAATCGGCCTTTATTCATATAATGCGTAATCCAGGAATGTAACGACTTAATTGGCACGAGAAAACTCGAGAAAATAGCAACTGCACAAATCGCAATGACTACAATGAATGGCTAAATTACTTCCGGACACTAAGGTTCCGCGGAGCTCCTCCTCACTATTCTTTATATTAGCGACACCCATTCAGTAGATATTTGAGCATTTTTAGTTATCTGTTCATGTAGTAGATTGGAATGCAAAGTTTGTTTGCTCAAGTGGTGTCCACTGTCCAGTGCATCAGGGGGAGTTTTAATTGCTGGTGCAACCTATATAGTGGGCTGATGCATTGCCGAAACGTCCAGACTGGAACCAAACAATGGACAGAGTAGGCTGCCCTGCACGGGTGTCACACCAGTCCTTGATGGCAGCTgcagtgtctgtgggttttcctTTCTCCATTGCACTTAACTGATCAGCCAATGTTATTGATTTGAGGCCAACGTACACCAGTGATGTACTATATTAGTTAATGTGCAACATCCTGAACTTTACAGATAGAAATGGAATGAATAGGTTCTAGACGATTCCCATTTCTAGATGACAGAAAAGTTTTATGCAGAATACATTTTGTCTATCTGAGCATACGGTAATGTTGCAGCTGAACAGGGCCCTTGTTCTAAATTAGACACTGACTAAAAGGGAAAAAGGAATACCTGAATCGTGTTCATTAGCGCATACTgtagaaaaacattttaaaataggAAACACAAACAAGCTTATTAAACAACATTTCACTCCGTTTCGGGTCACTGTCTTCCATTGCgtgcctactgaacatgacccagcaGACACTGCAGCAGCCCTCCAGGTATTGAGCCCAGCTGTACAGGCATAAGCCCTGCAGGGTTTTAGTATGGCTTCAGAGAAGATGGATGATTGCAGTGGGACACTGGGGCTGAATGTTTAcgtcaaagaggaggaggaagaggtgcaGGTGGAGGATTTCACAATGAAGGACAAGGAGGCATTcacagtgaaggaggaggaggaagcttTCACAGTGAAGGAAGAGGTGTTGACTTTCACATTTaaaaaagaagaggaagaggtttcaacagtgaaagaagaagaggacgaggTTATCACAGTGAAAATTGAGGAGGGTGGAGAGAGGCCTAGCCCCAGCACCGAGACTAAATGGGGCTCGAAGAGTGGAAAAAGTTCGATACAGGAACTGGACTGGCGAGCTCCTGTGGAGAAACCTCACTGCTGTTCCCAGTGTGGCAAAACATTCTCAGAGTCCGGAAACTTGAAGCAGCACATGCGGACGCACAGCGGAGAGAGACCTTACCACTGCTCCAAATGCGGGAAACGTTTCATACAATTGGGACACTTCAACAGCCACCAGCGCACGCACACGCAGGAGAAACCGTTCAGTTGCGGTGAGTGCGGGAAGAGTTTCTCTCAGAGAATCAATTTGAAGAAACACCAGCTCACACACTCCGGTGAGAGGCCTTTCCtgtgctctgactgtgggaagagtttctcttCATCTACCAACCTAAAAAGACACCAGAGCACGCACAGCAATGAAAAGCCTTTCCAGTGCACCAACTGTGAGAAAAGTTTCACTCATATACACCACTTGACACGTCATCAGACCGTACACACTGGGGAGAAACCTTACacttgctctgactgtgggaggAGTTTCTCCCTCCAGGGGACTTTAAAGAAACACCAGCGcacacacactggggagaaaCCGTACCAGTGCTTGCTCTGCGGGAAGAATTTCTCTCTTTCGGTGGCACTGAAGAGACACCAGCTCatgcacactggagagaaaccgtaCCAATGTTCTCAATGCGGGAAGAGTTTCACCCAAAAGGGACAATTAACTCAACACCAGGGCACACATGAACTAGAAAAGCCTTACCcctgctcccagtgtgggaaAAGTTACTCCTCAGCCCCCTCATTAAAAGCACATCAGAGGACTCACAAAGAGTCAACGTCACTCGCAATGACAGCACATTTCAGAAAGTAAATTATTGaactggttgtctctgattgggattgATAGCCTACATTTGAAACTATAGATTGTGCCTTAAATGCTTTGTCATGTTCAAACAAAACTCTTAGTCCCAATTTCATTTTCTCCCTGAAATGTTCACTTGCACACTCCTTACAGATTTAAAAGGAATGGACTGGTTTGCATTCAGTACCACAGAATGGTGAGCAACCTTGAATTCAATGGAAACGGCACTTAAAAACTTTAAGCCATTTGCAACCATCGATGGCCACCAGATTATCGCCAGCTGATCTTTAGTTAAACCAATAATTGGCGCTAAAATCACCTACACAGCTGATCTCAATTGCAACCATTATTGGACACCATTACCTCTCCCTAAAGTGGATGTTGGGCTTTACTCTTAGTTCTGATTTTAAGACTATTTTGCCCTCTGTTGGGTATTATCATCAGAACAATTGAATCCtgttattattattcttttttgcAGATTCAAGGTGATTTTAATCAATTTGACAATCATTCCATACAAGTAAAGTATTTAATTTTCTTGTTTTCCACAGCAAATCTTCTATGGCAGTGTAGCCTACCCTACACATTTTATGATTGGAAAAATCATGGTGTAGGATACATTTATTTCCAATTTATGTAATCCATTAATTATTTAACTTGTCTAAATAAAatatgcaatttttttttccatCAAGAGAGGTGAAGAACATTTTCCTGAACTGTAGGATACACATTTGAAACAGTATTGTAGGcaattttata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612201.2 False 2905 mRNA 0.43 3 28011797 28023916
XM_036985224.1 True 2911 mRNA 0.43 3 28011797 28023925

Neighbor

gene id symbol gene type direction distance location
brf1b LOC106571710 coding downstream 60347 27824150 ~ 27951450 (-)
LOC110529221 NA coding downstream 395703 27615000 ~ 27616094 (-)
LOC110529724 NA coding downstream 703765 27287115 ~ 27308032 (-)
esr2a erb1 coding downstream 727306 27244559 ~ 27284491 (-)
LOC110529723 NA coding downstream 824938 27170938 ~ 27186859 (-)
ppp4r4 ppp4r4 coding upstream 26234 28050159 ~ 28177674 (-)
prima1 prima1 coding upstream 303011 28326936 ~ 28388304 (-)
si:dkey-85n7.8 NA coding upstream 454892 28478817 ~ 28481944 (-)
ubr7 ubr7 coding upstream 582346 28606271 ~ 28624188 (-)
tmem251 tmem251 coding upstream 601487 28625412 ~ 28635685 (-)
G692725 NA non-coding downstream 156146 27855393 ~ 27855651 (-)
G692722 NA non-coding downstream 161046 27850510 ~ 27850751 (-)
G692687 NA non-coding downstream 166971 27800216 ~ 27844826 (-)
G692169 NA non-coding downstream 289594 27717179 ~ 27722203 (-)
G692153 NA non-coding downstream 326087 27685318 ~ 27685710 (-)
G692769 LOC106571703 non-coding upstream 8478 28032403 ~ 28036080 (-)
G692832 NA non-coding upstream 48063 28071988 ~ 28105978 (-)
G692856 NA non-coding upstream 86640 28110565 ~ 28110782 (-)
G692864 NA non-coding upstream 100492 28124417 ~ 28124648 (-)
G692879 NA non-coding upstream 126852 28150777 ~ 28151092 (-)
G691747 NA other downstream 695862 27315568 ~ 27315935 (-)
G691447 LOC106571509 other downstream 1143719 26864210 ~ 26868078 (-)
cenpw LOC106571497 other downstream 1580954 26428702 ~ 26430888 (-)
G690073 NA other downstream 2020654 25990678 ~ 25991143 (-)
G690033 NA other downstream 2046304 25965179 ~ 25965493 (-)
G692859 NA other upstream 91811 28115736 ~ 28116048 (-)
G693383 btbd7 other upstream 569416 28593341 ~ 28594431 (-)
G693665 NA other upstream 934470 28958395 ~ 28958832 (-)
G694858 LOC105017690 other upstream 1977838 30001763 ~ 30062168 (-)

Expression


Co-expression Network