LOC110529748


Basic Information

Item Value
gene id LOC110529748
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28736794 ~ 28766673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612228.2
GCTTTGTATTGTAGCCAACAGATCATTAGAACTCTGAACAACAAGCATACTGCACAGCTGAAGCTAAGCTCTGGTCTACAGTGTGTTTCTATAGGACAAAGTAATGGCAGGCCAAACAGTGTCCATGGAGGGGCCAGTGTGTCTAATTGAGAACGACAGTGACGGGAAACTGTGTGTGGTCCGCAGCGCACTGGAAACCCTGAGCCAGATTGAGCAGCATGTGGTAGTGGTGGCAGTGGTCGGCCTGTACCGCACCGGCAAGTCATACCTCATGAACAAACTGGCTGGGACGAACAAAGGTTTTGCCCTTGGAGCCACAATTCAGTCCCAGACTAAGGGCATCTGGATGTGGTGTGTGCCCCACCCAATAAAATCAGACCACACCTTGGTGCTGCTGGATACAGAGGGGCTGGGGGATGTGGAGAAGGGTGACGATAGTAATGACAACTGGATATTTTCCCTGGCTGTTCTTCTGAGCAGCACCCTGGTGTACAACAGCATGGGCACCATCGACAACTACGCCCTGGAGAAACTACACTATGTGACAGAACTGACAGACCACATTAAGGTGAAGTCGGTTGAGGGAGACATTGATGAATCTGCAGACTATGTCCGTTTCTTTCCGTCTTTTGTGTGGGCAGTCAGAGATTTCGGACTAGAGTTAAAGCTTGATGGAAAACCCATCACCGCACATCAGTACCTGGAGAATGCTCTTAAACCGAAACAAGgtACGAGCAACAAGATTGTTAAATACAACCTGCCTCGTGATTGTCTGAGGAAATTCTTTTCCCCTCGTTGGTGTTTTGTCTTTGAACGTCCTGCCAACTCTGAGAAAATGAAACGCATGGAGGAGTTGACAGATGCTGACTTGGAACCCTCCTTTGTGAAGCAGTCCAGAGACTTCTGTGACCACTTGTTTAAAGAAGTCAAGACTAAGACCATGATAGGTGGCCTGAAAGTCACTGGTAAAATGCTCGGGAACCTGACAGAGATGTACGTTGACATGATACGGAGTGGGCAGGTACCCTGCCTGGACAATGCTGTGGTGGCGCTGGCCCAGATTGAGAACTCCAGTGCCCTTGAAAAGGCCAAGGCCTACTACCAGCAGAGCATGGCAAAGATGGTGGTCTTTCCCACTGAGACCCAGCAGCAGCTGTCTATGGTTCATGCTTCCATGGAGAGGGAGGCAGTGGCCATCTTCATGAATAGTTCATTCAAGGATGAAGAACAGAAGTACCAGAAGGAGCTCATGAAAGCGCTTCAAGAAGTATATTCGACAATCTGTGATAAAAACTCGCAGGAATCCCAGAGGGCATGCACGCACATCATCGAACACATATTTGCTCCCCTAAAGGTTCAACTTCGGAAAGGTTCCTACATGACCCCTGGAGGATACAAACACTACTGCGATGATCTCAAAATGATGACCAGTGAATACAGATCAACAGGAGGCAAAGGAGTGAAGGCTGAAGAGGTACTGAAGGAGTACCTGAATGACAAGGAAAGCACTGGTCAGGCCATCCTGTCAGCAGACCAGTCTCTAACTGAAGCTGAATTGAAGGCCGAAGaggAGAAAGCGAAAAGGGAGGCGTCTGAGCAAGAGAAACGAACCATGGAAgagcagatcagagtccaggaaaTGCTGATGGACGATCAGAAGAGAACACATGAAGAGCATAAGAAACAGCTGTTGGAGAAGATGGAGGCTGACAAGGAAACTGCTAAAGTGGAGTACAATAGAGTTCTGGAGGCCAAACTCAAGGAGAAGGAAGACCTCCTCAAGGAAGGGTTTCATTGCAAAGCACAAGAAATGGAGGCACAGATAAAGGACCTCAGGAAGGAGCAGGAGGAACAGGAAAAAGCTAAGCCCTCAATGTGGAAGCTAGCTCTGGATAACGTTGGAAACGCTGCTCTAATGATTCCAGGATGGGGCAAATTAATTGGAGTTGGTTTGAAAGTTGGGTCACATTTCATGAACTGAAGGTCCTTTAGGGGGGATGATAATATACTACCAAAATATTGTGTTTCACAATATAATGTCCACTTTCGAGAAAGGTGTGGAtaaattctaaaatgttttacctaTCAATCATTAGACTGATTACTTTACATGAACCACTCCCTTCAGAAAGTGTGTTCATTTAGTTTAATGTTTGTTTAAAAggcataaaaaaaataaagagtaATTTTTTTAAAGGCAAA

Function

NR:

description
guanylate-binding protein 1-like

GO: NA

KEGG:

id description
K20899 GBP1_3_4_7; guanylate-binding protein 1/3/4/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612228.2 True 2202 mRNA 0.46 11 28736794 28766673

Neighbor

gene id symbol gene type direction distance location
chga chga coding downstream 8883 28704849 ~ 28727911 (-)
tmem251 tmem251 coding downstream 101109 28625412 ~ 28635685 (-)
ubr7 ubr7 coding downstream 112606 28606271 ~ 28624188 (-)
si:dkey-85n7.8 NA coding downstream 254850 28478817 ~ 28481944 (-)
prima1 prima1 coding downstream 348490 28326936 ~ 28388304 (-)
si:dkey-177p2.18 LOC106571734 coding upstream 9764 28776437 ~ 28804357 (-)
LOC110529750 LOC106571688 coding upstream 56030 28822703 ~ 28844827 (-)
ahsa1a LOC106571686 coding upstream 84201 28850874 ~ 28860111 (-)
LOC110529757 LOC106571682 coding upstream 223584 28990257 ~ 29005160 (-)
lcb2 lcb2 coding upstream 258610 29025283 ~ 29029716 (-)
G693390 itpk1 non-coding downstream 70860 28634023 ~ 28665934 (-)
G693085 NA non-coding downstream 270956 28465620 ~ 28465838 (-)
G692926 NA non-coding downstream 507980 28228421 ~ 28228814 (-)
G692909 NA non-coding downstream 540263 28196155 ~ 28196531 (-)
G692879 NA non-coding downstream 585702 28150777 ~ 28151092 (-)
G693468 NA non-coding upstream 1078 28767751 ~ 28768156 (-)
G693471 NA non-coding upstream 3328 28770001 ~ 28770212 (-)
G693488 NA non-coding upstream 18436 28785109 ~ 28785516 (-)
G693517 vipas39 non-coding upstream 106645 28873318 ~ 28876113 (-)
G693527 NA non-coding upstream 115630 28882303 ~ 28882931 (-)
G693383 btbd7 other downstream 142363 28593341 ~ 28594431 (-)
G692859 NA other downstream 620746 28115736 ~ 28116048 (-)
G691747 NA other downstream 1420859 27315568 ~ 27315935 (-)
G691447 LOC106571509 other downstream 1868716 26864210 ~ 26868078 (-)
G693665 NA other upstream 191722 28958395 ~ 28958832 (-)
G694858 LOC105017690 other upstream 1235090 30001763 ~ 30062168 (-)
G696068 NA other upstream 2080229 30846902 ~ 30847209 (-)
G696073 NA other upstream 2088434 30855107 ~ 30855407 (-)
G696499 NA other upstream 2710681 31477354 ~ 31478027 (-)

Expression


Co-expression Network