LOC118965505


Basic Information

Item Value
gene id LOC118965505
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30038581 ~ 30040011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052851.1
tgtgtgtgcgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgtgtctGTGCGAGACAGTCAGAGGGCTCAAGTCTCACGGTTTCCATGGTGTTGTTTACAAACAGGATTCCTCCATTGGTGAATGAGAAGCCTTAATGACAGGACACGGTGTTGTGctcataatacacacacacacacacacacacgcagctttATATTGGTTATGAAATCAAAGCTGAAAAGTGGGTTATGAAGAAACAGTTCTGTATGAGAAGCAGTTCAAAAAGAGCGATTTGGTCAATGCAATACTCTCAACGCTTTCCCAGGGTATTGGGATCAGACAATGAAACAACTTTGAACTAAATCTCTGTTTTCATTGTTGGCTAAAGTGGAAACAGACTGGTAACCAGGCTAACTCAAGATCCATAGCAACAGATCTCTGGTAAAaggggtgtttcagggtctacatggaactcaaaaggtttctacctggaacctaaaagggtttttCATAGGGCTCTCTTGCACTCTAAAAATGTggggttcaacaagggttcttctaagaaCCTTAGAGTTCTTGGCACTGAACGTGGCCCCCAGTAGGTTCTTCCAAGAACCCAataggaggtggggttcatcgaggtatctccttagttggtgggggttcttgcaggaacctaactgcccaactgaaacatttagGTGCAGGCACTTCACTGAAAAACGTAAAGATCTCTTCAATTTAAGaaaatggacacaagtcaatggatatcaatcaacaaagagGTATGAAGACGAGGAGGCATACAAAGGTATGTCAGTAGCTGTTGGTATGTTATTATGCAGATCACATTTACCATATTCCTCTCTTACCTCTTCAATGAATatcccataggcctctacattatggacatggtatatgaaaaccattatcaaaGCCGTTGTTTTCATTCCCATTTACCACAAAAAACAAGGTATGAATACTGTAGTGTGCATGTTTTATTAATCATCTGTATAATTACTATTCTTTGGGATTCacagacttcaccctccctacacctctgatgaatataacaggaaacctgtttgATCACCATGCtctgcaaaatcattctggctatggatacagagaacatcaacacattaacatcatCACACCattggacttggggctctgctgggagtttacctcatatTTAGATTGTTTTATTCTGCTTTGCCtctaaaatcataataaacactgagAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052851.1 True 1266 mRNA 0.42 3 30038581 30040011

Neighbor

gene id symbol gene type direction distance location
gtf2a1 LOC106571676 coding downstream 52222 29972511 ~ 29986359 (-)
LOC110529761 cep128 coding downstream 100250 29890555 ~ 29938331 (-)
LOC110529760 LOC106571680 coding downstream 573137 29460990 ~ 29465444 (-)
LOC118965624 NA coding downstream 814817 29213787 ~ 29223764 (-)
LOC118965608 NA coding downstream 825002 29212152 ~ 29213579 (-)
LOC110529769 LOC106571671 coding upstream 176997 30217008 ~ 30227240 (-)
LOC100135953 LOC100135953 coding upstream 203493 30243504 ~ 30251391 (-)
LOC110529225 LOC106571669 coding upstream 223574 30263585 ~ 30292341 (-)
LOC110529226 gphn coding upstream 252440 30292451 ~ 30419612 (-)
LOC110529771 LOC106571665 coding upstream 489278 30529289 ~ 30687478 (-)
G694860 NA non-coding downstream 10954 30024850 ~ 30027627 (-)
G694706 NA non-coding downstream 106538 29931811 ~ 29932043 (-)
G694705 NA non-coding downstream 107196 29931000 ~ 29931385 (-)
G694697 NA non-coding downstream 117128 29921128 ~ 29921453 (-)
G694898 NA non-coding upstream 54743 30094754 ~ 30094981 (-)
G694901 NA non-coding upstream 60171 30100182 ~ 30100426 (-)
G694904 NA non-coding upstream 63961 30103972 ~ 30104230 (-)
G694908 NA non-coding upstream 67795 30107806 ~ 30112851 (-)
G694919 NA non-coding upstream 85734 30125745 ~ 30125947 (-)
G693665 NA other downstream 1079749 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 1444150 28593341 ~ 28594431 (-)
si:dkey-85n7.8 NA other downstream 1556683 28478817 ~ 28481944 (-)
G692859 NA other downstream 1922533 28115736 ~ 28116048 (-)
G691747 NA other downstream 2722646 27315568 ~ 27315935 (-)
G696068 NA other upstream 806891 30846902 ~ 30847209 (-)
G696073 NA other upstream 815096 30855107 ~ 30855407 (-)
G696499 NA other upstream 1437343 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 1617715 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 2174475 32214451 ~ 32217572 (-)

Expression


Co-expression Network