LOC110529771 (LOC106571665)


Basic Information

Item Value
gene id LOC110529771
gene name LOC106571665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30529289 ~ 30687478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985273.1
ATTGATAAGCTTTTGCCTGCGTTATTTAATTTTACAGCACATAAATGTGTGGCTCTTAAAACGATGAGTTGTACAAAGTCATGAAATGCAAGGTGGGTAAATTGACATTACGGCCTGCCATGCCGCGGAAGAGCCCATGCGTTTGGTGCGCAGTGACCAAAAGTGAAGTTGCCGCTTCCTCGCTCTTTCCATTGGAATCGCAGTAGCAGAATCAGAGTGCTTACAGTATGTAGGCTATGTGACTGCCagacccctctttctctctgacaccGATGCGGTGGCACTAGGTAGTAGATTGTCAAACTGCGGGGTGAGGAGCCGCGGAGGAGACGTAAACCCAATAATCAGTGCCACAGGGCCGTCTATCAACGCGGCTGCAGTACAGCAATCTGACACTGGCATGCGCACTGCAGTTTAGAGTCAATTCGAGTCTCCTCAACCGGAGCCACAGGCAGCAGTGACTATTCCGATAACAGCCGTCCCCAGTTCCTGTTTCCGCCGCAGCTTTTTCCAACCGAATTTTGGACCAAAACATCGCCGCTGCGTCAGACTTCAACTTCGTCAGGCCTTCCCTCTCGGATCTCCCGGAAGCCTGGTGTGTCAAGTGAAGGAGCCAGGCCAAACACATGAAGTAATCAGGACCGGAGGAAAAGGTGACGTGTACAAACCAGGTGCAACCAGCAAGGGGCAAGGAGTGGAACGATAAACACACAGTCACCAAGGAGCACGAAAAAACAGGAGGTGGAGACCcctgcaggacaggacaggaacaacAGCCAGGAGCCTTAGTCAGTCAGTTAACCCTCTGAGGAGAAAAACATGCTCTAGCACAAGAAGAGGGGACTGGTTGGAATACTCACCAAAGAAACACCCAATTGTATCCCCTTTCACGCCTTCCACAAAACCCCTCGTCTCTCTTActacctccctccccctgccCAGCGGTGCCAGAGAGGATGCCCTGGTGGGTATTGTGACGGGGCGCgacggtgtgtgtgggtggcCAGGCTGAACTACAATGCGGCCCTGGGCGGGCTCGTGGCGCTGGAtcaccctggtgttgctggcgtGGGGCACGCTGCTCTTCTACATCGGGGGCCATCTGGTGAGAGACAGCGAACACCCTGAGAGGTCCAGCCGCGAGCTATCTAAGATCCTGGCCAAACTGGAGCGCCTCAAGCAGCAGAACGAGGACCTGAGACGCATGGCAGAGTCCCTCAGGATACCTGAGGGCAAAGTAGAAGAGGGAGGGGCCCTGGCTGTGGGGAGACTACGCTCGCTGGAGGACCAGCTGACCAGAGCCAAGCAGAAGATCCACAGCTTCCAGAGACTGACCGGAGATGGTCCAGGCCCCACCCAGGAGGAGCTGAGGCGGAGGGTAGAGAACGGTGTGAGGGAGCTCTGGTACTTTGTCCGCAGTGAGGTGAAGAGCCTTGGCCATGTGGAGGCCGGGGGAAGGCCCAGACAGGCTGACACCCTGCTAcaagacctgggacaccagcagaggtcTATCATGACAGACCTGTACTACCTCAGCCAGGCTGATGGAGTGGGAGACTGGAGAGTGAAGGAGGCCAGGGACCTGTCTAACCTGGTGCAGAGCAGGATCACCtacctacagAACCCCCAGGACTGCAGCAAGGCACGTAAGCTGGTGTGTAACATCAACAAGGGCTGTGGCTATGGCTGTCAGCTGCACCACGTGGTCTACTGCTTCATGATCGCATACGGCACCCAGCGCACCCTCATCCTGGAGTCCCACAACTGGCGCTACGCCACGGGTGGCTGGGAGACCGTCTTCCACCCCGTCAGCAACTCCTGTACCGACCGCACTGGGGTGTCTACAGGGCACTGGTCAGgtGAGGCCCATGACAAGGACATCCAGGTGGTGGAGTTACCCATCGTGGATAGCCTACACCCCCGCCCCCCGTACCTGCCCCTGTCCATCCCGGAAGACCTAGCCCAGCGTCTACACCGTCTCCATGGTGACCCGTCTGTGTGGTGGGTGTCTCAGTTCGTTAAGTACCTGGTGCGTCCACAGGCCTGGCTGGAGAAGGAGATTGCAGACACCACAGCCAAGCTGGGTTTCAAGCACCCCATCATAGGgGTCCATGTTCGACGGACAGATAAGGTGGGGACGGAGGCTGCGTTCCACCCTATAGAGGAGTACATGGTGCACGTGGAGGAACAGTTCCAACACATGGCCAGACGCATCCACGTGGACAAGAAACGAGTCTACCTGGCAACAGATGACCCCTCACTACTGCAAGAGGCTAAGACGAAGTACGCTGACTATGAGTTCATCAGTGATAACTCCATCTCGTGGTCAGCCGGCCTTCACAACCGCTACACCGAGAACTCTCTGAGAGGAGTCATCCTAGACATACACTTCCTGTCCCAGACCGACTTCCTGGTCTGCACCTTCTCCTCACAGGTGTGCCGCGTGGCCTACGAGATGATGCAAACGCTGCACCCGGACGCCTCCTCCTTCTTCCACTCGCTAGACGACATCTACTACTTCGGTGGTCAGAACGCCCACAACCAGATCGCCATCTACCCCCACCAACCCCGCAGCCCCGAAGACATACCCCTGGAGCCCGGTGACGTCATCGGCGTGGCGGGGAACCACTGGGATGGCTACTCGAAAGGGGTCAACCGTAAAATGGGCCGCACCGGCCTCTACCCGTCCTACAAAGTCAAGGAGAAGATCGAGACCGTGAAGTATCCCACGTACCCCGAGGCAGACAAGCTGCTCTCAAACTCCCAACATAAGTGAAGAAGAAAGGGAAAGATGAAAATAAAAATAGAGAAAGAGACTCTGATTCAGTGATAGAAcagggggaaagggggggggggggtggtcgtGTTTAGGCTGCACTGAgagtctgtgtgttgtgtgtgtgtgggtctgtaaATTATGGAATCTTGCAGCTGCCACTACATCGTCCCCGTGCACACAGATTATGATGAAAAGTATCAATCAAACATTGATTTCAAATGAACCGGAAAACAATTAAACGCCCGTAGCCGACAACGTGGACTGGGAATGGAACTAGCCAATTGGGTCGAGCCTTGGATCAAGGGCTGAGAAACAATTATAAACtggaagaaaaaaacatgttttcatttttatTCAATTATTTTGGTGGTTTTAATTCTATTCTTGCCTTATTTCTTCTCTCCTGTGTTCATTAAATGTACTGTATCTTGTATCTTCCCCTTGCCATATTCACTCACTGCGTTCCTCCACTCTCCTTTTGCTCCAATAGCACTGTCCAACATCTAGTCTTTCATGTGCAATTCCTTTTATACCACCTTAATGTCTTTTTAACAAGTGATTTGATTTTAACGTGCGTGTGTCTGTTTAGGGGGAATGACATGGTGCCTGTCAGCAGTGAGCGGCGTCCTTATGTCCTTACTGAATAGTTGTGTTGTGCTCAATGAGACTGGTGGTGACAGTTGGACCCTTAGCAGGAACTTGAGCCGTGAACTATGGTGACCAATAAGTGAAGATTGATGATGGTGAACAATGTTAATCTATGTTGAACAATAATACTCTATGGTGACCTATGATTACCTTTGAACTATGATGACCTGTAATGATCTACGGTGAACTACAGTGCACACAGGAGCACTCTTTAGGCTCACCAAACAAAGCACTCCACTGAGCTAATGTCCTTTTGACATCTCTACGTCCGTCTAAGTCCATCTGTTTGtttgttgtattattttttttactaacaTTACTGTTGGAaatatgaggggggggggggggaatagatgCCTATGTTGAAATTGATAATGCTATGTCATAAGAGGTTTGTAATCGACTGTCATAAAGAACTTTGTCATA

Function

NR:

description
alpha-(1,6)-fucosyltransferase

GO: NA

KEGG:

id description
K00717 FUT8; glycoprotein 6-alpha-L-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985273.1 True 3853 mRNA 0.52 10 30529289 30687478

Neighbor

gene id symbol gene type direction distance location
LOC110529226 gphn coding downstream 109677 30292451 ~ 30419612 (-)
LOC110529225 LOC106571669 coding downstream 236948 30263585 ~ 30292341 (-)
LOC100135953 LOC100135953 coding downstream 277898 30243504 ~ 30251391 (-)
LOC110529769 LOC106571671 coding downstream 302049 30217008 ~ 30227240 (-)
ches1 LOC105017690 coding downstream 467045 30001764 ~ 30062244 (-)
LOC118965507 LOC106569332 coding upstream 79773 30767251 ~ 30769345 (-)
LOC110529773 LOC106571662 coding upstream 224653 30912131 ~ 30989709 (-)
LOC110529774 cpsf2 coding upstream 336898 31024376 ~ 31044032 (-)
LOC110529775 LOC106571660 coding upstream 360032 31047510 ~ 31051722 (-)
trnaa-ugc-25 NA coding upstream 382865 31070343 ~ 31070417 (-)
G695424 NA non-coding downstream 188 30528673 ~ 30529101 (-)
G695233 NA non-coding downstream 83618 30445455 ~ 30445671 (-)
G695217 NA non-coding downstream 92626 30436339 ~ 30436663 (-)
G695199 NA non-coding downstream 108333 30420735 ~ 30420956 (-)
G695152 NA non-coding downstream 112875 30300160 ~ 30416414 (-)
G695537 NA non-coding upstream 16908 30704386 ~ 30704677 (-)
G696049 NA non-coding upstream 122035 30809513 ~ 30809968 (-)
G696056 NA non-coding upstream 139159 30826637 ~ 30827983 (-)
G696058 NA non-coding upstream 140562 30828040 ~ 30828250 (-)
G696061 NA non-coding upstream 150931 30838409 ~ 30838645 (-)
G694858 LOC105017690 other downstream 467121 30001763 ~ 30062168 (-)
G693665 NA other downstream 1570457 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 1934858 28593341 ~ 28594431 (-)
si:dkey-85n7.8 NA other downstream 2047391 28478817 ~ 28481944 (-)
G692859 NA other downstream 2413241 28115736 ~ 28116048 (-)
G696068 NA other upstream 159424 30846902 ~ 30847209 (-)
G696073 NA other upstream 167629 30855107 ~ 30855407 (-)
G696499 NA other upstream 789876 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 970248 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 1527008 32214451 ~ 32217572 (-)

Expression


Co-expression Network