LOC110529775 (LOC106571660)


Basic Information

Item Value
gene id LOC110529775
gene name LOC106571660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31047510 ~ 31051722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612296.2
GATAAAATAACCGTAAGAATATCCATGTTGTCGCACTATTGATGACGTCAGGAATGAGAAAATATTCGACAACATGGACAAGAAACATGTGTCAGCTTTTGAATTGTACCAAAATGCGCTATTAGCATCGACTCCTGAAGTCAAAACATCATCTGTGAAGATTACAGCAAAGAAGCAGAAGGAAAATGGTATCCAGACCCACAAATCCATCAAAAAGACCAAAAGGAAACAGATGGGCAAGCAGGTCATAAAAGCGGCACAGAcagaggagaaggtggagagacTGGCAGAGGGGGTACAGTGTGGAGAGATTAGCGGAGTGGCACTAGATGCTCTGCTGAGTGACCTGGCTAAAGTCAGCAACAGCAGGGTGAGAGCCAGCAAACTTTTCCAGTGGCTCATCCACCCAATTCCCTCCAAGAGTTTCTTCAGAGATGCATGGGAAAAGAAGCCAGTTTTGATCAAACGTCAGAATCCAGACTATTATACGGGACTGTTCTCCACAGCAGAGTTTGATCGCATTTTAAGACGGGATGACGTTCAGTATGGGGTGAACCTGGATGTCACCAGCTACAGAAACGGCAAAAGAGAGACACACAATCCTCCAGGGAGGGCTCTCCCATTCACTGTATGGGACTTCTATGAGAGTGGTTGCTCGCTGCGTATGCTTAACCCCCAGGCCTTCTCCTCCACTGTGTGGAATGTGCTGTCCATCCTCCAGGAGCACTTTGGCAGCATGGCAGGAGCCAACATGTATTTGACACCTCCAGGAACACAGGGCTTTGCTCCACATTACGATGATATTGAGGCCTTTGTGGTTCAGCTGGAAGGGAAGAAGCACTGGAGAGTTTACAACCCCAGGTCAGAAAATGAGGTCTTGCCTGTCGTTTCCAGTCctaactttagccactCAGAGATCGGGAAGCCCATCCTGGAGGCAGTCCTGGAGGCTGGGGACCTCCTCTACTTCCCCCGAGGATTCATCCACCAGGGGGACTGCCTGTCGGATGCTCACTCCCTCCACATCACTGTCTCATCTTACcagaggaacagttggggaaACTTACTGGCAAAGGTGGTCCCAGCAGCCCTAGAGATGgccatggaggaggatgtggactTCAGAGGAGGCCTGCCTGTGGATTACCTGACGTACATGGGGGTGCAGAACTCAGACAAGGAGGATCCACGCAGGGCCCAGTTCCTATCCAGAATAGAGGGTCTGATGAAGAAGCTATCAACCTTTGCCCCTGTGGATGCTGCTGTGGATCAGAAAGCTAGGGGCTATCTCCATGACTGTCTTCCCCCGATGCTCACCGCAGAGGAAAGGGCCAGCAGTGTCCAGGGAGCTCCTTCCAGGTGGGAGAATGGAGAGCCGGTGGACATGGGTGTGGCCATCAGAGGCCAGATCAGAGTCAGACTCGTCCGTTCTGGAATCGCCAGGTTATGCAGTGATGGAGAAGCAGTTTGGCTTTACTACACTGCCGACAACTCCAGAGTCTACCACAAGGAGGAGCCCAAGAGTGTTGAAATAAAAGCAGAGCACACAGATGCCATGGAGTTTCTGATCCATGCATATCCAAAGTTTGTGACAGTGGGCAGCTTGCCATGCAAGTTGGCTGAGGACAAGGTGTCCTTGGCTGAGCTGCTGTTTAAGAGAGGGCTTATTCACACTGCAGAACCTCTGCAGCAATCCTGAAGAGTTTCAAAATAAATGTCTGCCATGCCAGCATCATTCACTTCACTATTATGTGTAGGTAGAATTGTTCAGATTTTTAGGACAGCGGTCATTAACTCAGTAGTCCATCAGCATTGCCCTCTACAACAAATTCATCTAAAATCTTCAAAAACTGTTAGTAATAGAGCTGAAATAGCTATTTTACAATGTTACCCTTGTTCAGTAAGTATTGAATTAAACTTACTTGCATATTGGTGTAAAACA

Function

NR:

description
ribosomal oxygenase 1-like

GO: NA

KEGG:

id description
K16914 RIOX1, NO66; bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612296.2 True 1942 mRNA 0.49 15 31047510 31051722

Neighbor

gene id symbol gene type direction distance location
LOC110529774 cpsf2 coding downstream 3478 31024376 ~ 31044032 (-)
LOC110529773 LOC106571662 coding downstream 57801 30912131 ~ 30989709 (-)
LOC118965507 LOC106569332 coding downstream 278165 30767251 ~ 30769345 (-)
LOC110529771 LOC106571665 coding downstream 360032 30529289 ~ 30687478 (-)
LOC110529226 gphn coding downstream 627898 30292451 ~ 30419612 (-)
trnaa-ugc-25 NA coding upstream 18621 31070343 ~ 31070417 (-)
LOC110529227 LOC106571657 coding upstream 47804 31098780 ~ 31120500 (-)
LOC118965648 NA coding upstream 64856 31116578 ~ 31116747 (-)
LOC110529778 LOC106571654 coding upstream 157281 31209003 ~ 31216765 (-)
zfp36l1b zfp36l1 coding upstream 241081 31292803 ~ 31298521 (-)
G696189 NA non-coding downstream 12143 31034269 ~ 31035367 (-)
G696176 NA non-coding downstream 31241 31015946 ~ 31016269 (-)
G696126 NA non-coding downstream 105416 30941880 ~ 30942094 (-)
G696125 NA non-coding downstream 106121 30941182 ~ 30941389 (-)
G696120 NA non-coding downstream 115767 30931520 ~ 30931743 (-)
G696220 NA non-coding upstream 34772 31086494 ~ 31089094 (-)
G696224 NA non-coding upstream 42626 31094348 ~ 31097930 (-)
G696289 LOC106571655 non-coding upstream 149852 31201574 ~ 31204165 (-)
G696073 NA other downstream 192103 30855107 ~ 30855407 (-)
G696068 NA other downstream 200301 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 985342 30001763 ~ 30062168 (-)
G693665 NA other downstream 2088678 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 2453079 28593341 ~ 28594431 (-)
G696499 NA other upstream 425632 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 606004 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 1162764 32214451 ~ 32217572 (-)
G697774 LOC106571626 other upstream 1447077 32498799 ~ 32499410 (-)
G698356 NA other upstream 1937523 32989245 ~ 32990061 (-)

Expression


Co-expression Network