LOC110529787 (LOC106571648)


Basic Information

Item Value
gene id LOC110529787
gene name LOC106571648
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31428524 ~ 31431727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612321.2
CCCGTGATTTGAGCTTATAACCAATTATTGTTATTAAAGATGAATCTGCTGCAGTATACTTGGAGAAtaatgaaacaaacaaaaaaaactggTGTGTCTGGCCTCTCTCCACCAACCTGTCTGCGCGTGACGCAAGGGTAGTCTACTTAAAGCAGGATTAGCGCCATACCAACATTACACTCAACTGCCCTCCATTCAAGCACGGCGCGACCTGGCGTCCAGCGCTCGCCATCGAAAATAGGAGGGCTTTCTACTAATCAGCACTCAGACTCGCGCGAGCAAAAGTGCTTGGGTTGTCAAGTGATCTTTTAGCAGAGGCGCAGAAGGCAGAAGGCAGGAGCGCACGCGGCAGCGGCGCGTTACCAATGCATTCTCCAGATATTGGAGCATCCGGAGTGTAAAACAAGGGAAACAATAGATTCCACAAGAACGGTGCACGGTGTGCTATCATCTCCAAATGAATGACAATGGGGGAGTGGACGATATTAGAGCGTCTCTTGGAGGCAGCTGTCCAACAGCACTCTACTATGATCGGAAGGATCCTCCTAACAGTGGTGGTGATTTTCCGGATTCTAATCGTTGCGATCATTGGAGAGACCGTCTATGATGACGAGCAGTCCATGTTTGTGTGCAACACCCTGCAGCCCGGCTGTAACCAGGCTTGCTACGACAAGGCGTTCCCCATTTCCCACATCAGATATTGGGTGTTTCAGATTATTCTGGTGTGCACCCCCAGTCTCTGTTTCATCACCTACTCCGTGCACCAGTCTGCCAAGCAGAAGGAGCGCTTGGAGCGGGGGTATTCCACCGTGTTCCTCTCCTTGGACAAGCGCCAAGATTCCATCAAAAGAGACGACAGCAAAAAGATcaaaaacaccattgtaaatggaGTACTTCAGAACACGGAGAACTCCACGAAAGAAGCCGAGCCCGACTGCTTGGAGGTGAAGGACATCCCAAATTCGGCCATGAGAACTAGTGGAAAGTCTAAAATGAGGAGGCAGGAGGGCATCTCAAGATTTTACATCATCCAAGTGGTTTTCCGAAACGCTCTAGAGATAGGGTTCCTGGTGGGTCAATATTTCCTGTACGGATTCAATGTCCCCGCGGTATATGAGTGTGATCGATACCCCTGCATCAAAGATGTAGAATGCTACGTTTCAAGACCCACGGAGAAGACTGTGTTTCTGGTTTTCATGTTTGCGGTCAGTGGTGTCTGTGTGCTCCTGAACTTGGCTGAACTCAATCATCTTGGGTGGAAGAAGATCAAAGTAGCTGTCAAAGGCGTGCAGGCCAGGAGGAAGTCCATCTACGAGATCCGTAACAAAGACATGCCTAGAATGAGCATGCCCAATTTCGGCCGCACTCAATCAAGTGACTCTGCCTATGTGTAGCATATTGAGAAGGCCCAAGACAAGCCTCGTGGACACCGGTTGCGTCAAACTGTATGGGTTCTCGCGGAGGGCCATTCATTTCAATGGGTGGCAATCCACACCACTGCGACTCATCTGCTGGACAAGGTTGTGGTGCGTAGCACTGCGTGCAGTGTGTCGCATGCGTTGGATTTTTCCAACTGGTGTATTGCTTTGCTGTGTGGTATCAGACACAGAAGTAGATAGACCACCGAAGAAGTTGCAAATATgtagcgttttttttttttttttttgcatgcgGCTTAAGTGCGACAGCTGTGCATTTCAGCACCACCGAACAGAACAATTGTACAaagaataaaaatatatttaacaagAATGTGGTGTATATTTTATCACACCAACTTCGCTTGGTAGATCGATTTTATTTGTCTTTTACTGACAACTAAAAAACAAACGGACCAAACGTTTGTCATATATTTATGAGAAGGCACTGATGCAACGTTTATAGATGATGGTTTAGCCTATATTTTGTAAAGCGCTTCTTAGAagtatataatgtatgtgttgaCATTCACTCTGTCGTTCACTTCAGCTGTTGAACATAGAGTAAATACTTGCACTATATATGAATAATGAGGCAAAATATATACAATGTGTGCTGTGATGGTGTTTTTACGACATTCCGCCGGATTTAAACACCATATACCATTATAgcaatgaaacacacacattatttggCAGTTTTAGGGTCAAATGTACTCAAATGATATACATTCTTCCAGtatattactcatctcacatCTTTGTTGTCAGCACTATCGTTGTTTCGGTCGCCTGAGTTTGCACCATTGACCTTAACCTATGTGATCACTCAATTGGGGGGTAGGGGCTTGGGACTTTTAAAAttcattttttctttattttatttacacCCAGGCGCCCATTGCTTTCGTTTGTGGGCAAATGGATTTTCTTGATTTAATGTCATCAAGTGCCatatatgtacataaatataaaCATTATAAATGTATAGAGTATTATCATCATCATAACAGCAGAATTCTGTAAATTCCTCTTTTGGATTAAACGCTGTCAACGTATATGATTTGAATAGCTGTGGTTTGTATGGAAATGGTATGCTACTGCTATATTATCATCCCTGGTTTCATTTGGCAACATGAAAAAACAAGCAACCTTTGCACATTCAAAAAGTATTGATGAGCAATTAGTCATATAGACTAGAGCACAAATCTGAATTGGAATCAATCCGATGATAGGCAATAAATGTTTGCCCCTGGTGCTACCATTTTCCAAAGCAATCATCGATGTAAGATCATACCGAAAGGTGATCCTATccacaaataaaaatgtaattcat

Function

NR:

description
PREDICTED: gap junction delta-2 protein-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612321.2 True 2754 mRNA 0.43 2 31428524 31431727

Neighbor

gene id symbol gene type direction distance location
cgrrf1 cgrf1 coding downstream 47446 31376592 ~ 31381078 (-)
zfp36l1b zfp36l1 coding downstream 130003 31292803 ~ 31298521 (-)
LOC110529778 LOC106571654 coding downstream 211759 31209003 ~ 31216765 (-)
LOC110529227 LOC106571657 coding downstream 308024 31098780 ~ 31120500 (-)
LOC118965648 NA coding downstream 311777 31116578 ~ 31116747 (-)
LOC110529789 LOC105024319 coding upstream 665 31432392 ~ 31435370 (-)
LOC110529790 LOC106571645 coding upstream 21607 31453334 ~ 31458247 (-)
LOC110529791 LOC106571644 coding upstream 55090 31486817 ~ 31503990 (-)
LOC110529792 LOC106571729 coding upstream 170956 31602683 ~ 31606191 (-)
LOC110529793 LOC106571728 coding upstream 225905 31657632 ~ 31703525 (-)
G696378 LOC106571649 non-coding downstream 25968 31397740 ~ 31402556 (-)
G696369 NA non-coding downstream 66210 31362041 ~ 31362314 (-)
G696367 NA non-coding downstream 68307 31359968 ~ 31360217 (-)
G696366 NA non-coding downstream 73420 31354830 ~ 31355104 (-)
G696365 NA non-coding downstream 73992 31354199 ~ 31354532 (-)
G696531 NA non-coding upstream 118785 31550512 ~ 31551280 (-)
G696543 LOC106571642 non-coding upstream 140542 31572269 ~ 31574519 (-)
G696639 NA non-coding upstream 203597 31635324 ~ 31635619 (-)
G696640 NA non-coding upstream 206413 31638140 ~ 31638372 (-)
G696649 NA non-coding upstream 210880 31642607 ~ 31642920 (-)
G696073 NA other downstream 573117 30855107 ~ 30855407 (-)
G696068 NA other downstream 581315 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 1366356 30001763 ~ 30062168 (-)
G693665 NA other downstream 2469692 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 2834093 28593341 ~ 28594431 (-)
G696499 NA other upstream 45627 31477354 ~ 31478027 (-)
LOC110529804 ypel5 other upstream 782759 32214451 ~ 32217572 (-)
G697774 LOC106571626 other upstream 1067072 32498799 ~ 32499410 (-)
G698356 NA other upstream 1557518 32989245 ~ 32990061 (-)

Expression


Co-expression Network