LOC110529804 (ypel5)


Basic Information

Item Value
gene id LOC110529804
gene name ypel5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32214451 ~ 32217572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612343.2
CTACCGGATGTTGATACAGTCTGCGGAACAGCTGTGAGAGAACAACAAAGCTGACGCCACTTCTAGCTACAGAATCGACGAGAAGGACGAAAAGAAGgtgaaaatacaacaacaaaactgGATTCGAGGTTGATAAAGACTATAGAAGTGGTCAAGAAAACAGGTTATTAACATTCGTGTCGACAGAACTCTGAAAATTACAGATTCAAGCACTATGGGCCGGATCTTCCTGGACCACATCGGCGGGACCCGCCTCTTCTCCTGCGCCAACTGTGACACCATCCTGACCAACCGCTCTGAGCTCATCTCCACGCGCTTCACTGGCGCCACGGGCCGAGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGTGTGATGCTGACGGGCAGACACATGGTGCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTTGCCACAGAAGACAGTCAGCGCTACAAGGAAGGCCGCGTCATCCTCGAAAGGGCGCTAGTAAGGGAGAGCGAGGGCTTCGAGGAGCATGTGCCCTCTGATAACTCCTGAGTCCCCCGTCCCTCCTTTCTGCCTTGTGCACCCAACATCTCTCCCAATCCCCAGTGTCCCCTACACTCCTCTCCTTATAGGCAACTACCTGTGTATCAGCTTCCCACCAGCAAGAATTGTGTCGAGCTAGACAAGCCTGTAATTATGTCCGCCCCTCACACATAttgtacacaacatttgagaaTGCACTCGCTCACAGGCTATAGTGCTTATAATGCATATAATGTACATGCATAAGATTCTGCACGATACATGTGTATACATTGGACTACAACTGCCTGAAGAGTAGGGGTTGTGGTGGGGGGAGTAACTTAATGACCCAAAGTGGAGAGCATGGACAGATGCTAATGTCTTTGTCAGTGATACAGCTGTGTATGATAAAACCGCTGTTGCGTGagagcttggggggggggggggtgagtgatGCTTGTGTTTAGGATGAAATATTATTTAAGTTTTAGTGAGAATGGGTGTGAAAATTGATTTGAGGAAATTATCTTTCTGAATATTGTCATTAAACCCAGTTTCCATTTGCTTTTATTAACAAATATTAGATTTGATAGTGCTGATTTTAGTTGACTGTTTGCACATTATGAAACTGATGTCAACCCTCACTTTGATCCCGATGACAAATGCATGTGTGTACTAAAGCCTCATGTCTGCCAATGGACGCCTAGACAATAGAACCTGTGATCAACCTCAAATGCTGACAATTGTGTAACAATTATCAAAAGACAACTTGACCATTGTGTAAATGTGACCAAAAAAAACCATGAACCGGCATTGTTGACAATATTGTGGTTAAGTTCTGTATTAGGATTGGTCAGTGCTGTGTTTTCTTTTTGGGTTGCATAGTCTTgcgatgccatccttccaatccTCGTTCATCACTCAGCTATTGGAACAAAATTAAATTGTGAGAAAGCCTGGAAAACTAAGTAGGAGTTGAGTTAAAGCTACTGTTTTTTTCTTTCAGGCCTCCGGGTGATGGATTATAATAAAGAAATTGATCATATGAAA
>XM_021612342.2
ATCTACCGGATGTTGATACAGTCTGCGGAACAGCTGTGAGAGAACAACAAAGCTGACGCCACTTCTAGCTACAGAATCGACGAGAAGGACGAAAAGAAGgtgaaaatacaacaacaaaactgGATTCGAGGTTGATAAAGACTATAGAAGTGGTCAAGAAAACAGGTTATTAACATTCGTGTCGACAGAACTCTGAAAATTACAGATTCAAGGTCGGTCTCTGCTTACAACAGCACTATGGGCCGGATCTTCCTGGACCACATCGGCGGGACCCGCCTCTTCTCCTGCGCCAACTGTGACACCATCCTGACCAACCGCTCTGAGCTCATCTCCACGCGCTTCACTGGCGCCACGGGCCGAGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGTGTGATGCTGACGGGCAGACACATGGTGCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTTGCCACAGAAGACAGTCAGCGCTACAAGGAAGGCCGCGTCATCCTCGAAAGGGCGCTAGTAAGGGAGAGCGAGGGCTTCGAGGAGCATGTGCCCTCTGATAACTCCTGAGTCCCCCGTCCCTCCTTTCTGCCTTGTGCACCCAACATCTCTCCCAATCCCCAGTGTCCCCTACACTCCTCTCCTTATAGGCAACTACCTGTGTATCAGCTTCCCACCAGCAAGAATTGTGTCGAGCTAGACAAGCCTGTAATTATGTCCGCCCCTCACACATAttgtacacaacatttgagaaTGCACTCGCTCACAGGCTATAGTGCTTATAATGCATATAATGTACATGCATAAGATTCTGCACGATACATGTGTATACATTGGACTACAACTGCCTGAAGAGTAGGGGTTGTGGTGGGGGGAGTAACTTAATGACCCAAAGTGGAGAGCATGGACAGATGCTAATGTCTTTGTCAGTGATACAGCTGTGTATGATAAAACCGCTGTTGCGTGagagcttggggggggggggggtgagtgatGCTTGTGTTTAGGATGAAATATTATTTAAGTTTTAGTGAGAATGGGTGTGAAAATTGATTTGAGGAAATTATCTTTCTGAATATTGTCATTAAACCCAGTTTCCATTTGCTTTTATTAACAAATATTAGATTTGATAGTGCTGATTTTAGTTGACTGTTTGCACATTATGAAACTGATGTCAACCCTCACTTTGATCCCGATGACAAATGCATGTGTGTACTAAAGCCTCATGTCTGCCAATGGACGCCTAGACAATAGAACCTGTGATCAACCTCAAATGCTGACAATTGTGTAACAATTATCAAAAGACAACTTGACCATTGTGTAAATGTGACCAAAAAAAACCATGAACCGGCATTGTTGACAATATTGTGGTTAAGTTCTGTATTAGGATTGGTCAGTGCTGTGTTTTCTTTTTGGGTTGCATAGTCTTgcgatgccatccttccaatccTCGTTCATCACTCAGCTATTGGAACAAAATTAAATTGTGAGAAAGCCTGGAAAACTAAGTAGGAGTTGAGTTAAAGCTACTGTTTTTTTCTTTCAGGCCTCCGGGTGATGGATTATAATAAAGAAATTGATCATATGAAA
>TU793919
TGCGGAACAGCTGTGAGAGAACAACAAAGCTGACGCCACTTCTAGCTACAGAATCGACGAGAAGGACGAAAAGAAGgtgaaaatacaacaacaaaactgGATTCGAGGTTGATAAAGACTATAGAAGTGGTCAAGAAAACAGGTTATTAACATTCGTGTCGACAGAACTCTGAAAATTACAGATTCAAGGTCGGTCTCTGCTTACAACAGCACTATGGGCCGGATCTTCCTGGACCACATCGGCGGGACCCGCCTCTTCTCCTGCGCCAACTGTGACACCATCCTGACCAACCGCTCTGAGCTCATCTCCACGCGCTTCACTGGCGCCACGGGCCGAGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGTGTGATGCTGACGGGCAGACACATGGTGCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTTGCCACAGAAGACAGTCAGCGCTACAAGGAAGGCCGCGTCATCCTCGAAAGGGCGCTAGTAAGGGAGAGCGAGGGCTTCGAGGAGCATGTGCCCTCTGATAACTCCTGAGTCCCCCGTCCCTCCTTTCTGCCTTGTGCACCCAACATCTCTCCCAATCCCCAGTGTCCCCTACACTCCTCTCCTTATAGGCAACTACCTGTGTATCAGCTTCCCACCAGCAAGAATTGTGTCGAGCTAGACAAGCCTGTAATTATGTCCGCCCCTCACACATAttgtacacaacatttgagaaTGCACTCGCTCACAGGCTATAGTGCTTATAATGCATATAATGTACATGCATAAGATTCTGCACGATACATGTGTATACATTGGACTACAACTGCCTGAAGAGTAGGGGTTGTGGTGGGGGGAGTAACTTAATGACCCAAAGTGGAGAGCATGGACAGATGCTAATGTCTTTGTCAGTGATACAGCTGTGTATGATAAAACCGCTGTTGCGTGagagcttggggggggggggggtgagtgatGCTTGTGTTTAGGATGAAATATTATTTAAGTTTTAGTGAGAATGGGTGTGAAAATTGATTTGAGGAAATTATCTTTCTGAATATTGTCATTAAACCCAGTTTCCATTTGCTTTTATTAACAAATATTAGATTTGATAGTGCTGATTTTAGTTGACTGTTTGCACATTATGAAACTGATGTCAACCCTCACTTTGATCCCGATGACAAATGCATGTGTGTACTAAAGCCTCATGTCTGCCAATGGACGCCTAGACAATAGAACCTGTGATCAACCTCAAATGCTGACAATTGTGTAACAATTATCAAAAGACAACTTGACCATTGTGTAAATGTGACCAAAAAAAACCATGAACCGGCATTGTTGACAATATTGTGGTTAAGTTCTGTATTAGGATTGGTCAGTGCTGTGTTTTCTTTTTGGGTTGCATAGTCTTgcgatgccatccttccaatccTCGTTCATCACTCAGCTATTGGAACAAAATTAAATTGTGAGAAAGCCTGGAAAACTAAGTAGGAGTTGAGTTAAAGCTACTGTTTTTTTCTTTCAGGCCTCCGGG
>TU793920
TGCGGAACAGCTGTGAGAGAACAACAAAGCTGACGCCACTTCTAGCTACAGAATCGACGAGAAGGACGAAAAGAAGgtgaaaatacaacaacaaaactgGATTCGAGGTTGATAAAGACTATAGAAGTGGTCAAGAAAACAGGTTATTAACATTCGTGTCGACAGAACTCTGAAAATTACAGATTCAAGCACTATGGGCCGGATCTTCCTGGACCACATCGGCGGGACCCGCCTCTTCTCCTGCGCCAACTGTGACACCATCCTGACCAACCGCTCTGAGCTCATCTCCACGCGCTTCACTGGCGCCACGGGCCGAGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGTGTGATGCTGACGGGCAGACACATGGTGCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTTGCCACAGAAGACAGTCAGCGCTACAAGGAAGGCCGCGTCATCCTCGAAAGGGCGCTAGTAAGGGAGAGCGAGGGCTTCGAGGAGCATGTGCCCTCTGATAACTCCTGAGTCCCCCGTCCCTCCTTTCTGCCTTGTGCACCCAACATCTCTCCCAATCCCCAGTGTCCCCTACACTCCTCTCCTTATAGGCAACTACCTGTGTATCAGCTTCCCACCAGCAAGAATTGTGTCGAGCTAGACAAGCCTGTAATTATGTCCGCCCCTCACACATAttgtacacaacatttgagaaTGCACTCGCTCACAGGCTATAGTGCTTATAATGCATATAATGTACATGCATAAGATTCTGCACGATACATGTGTATACATTGGACTACAACTGCCTGAAGAGTAGGGGTTGTGGTGGGGGGAGTAACTTAATGACCCAAAGTGGAGAGCATGGACAGATGCTAATGTCTTTGTCAGTGATACAGCTGTGTATGATAAAACCGCTGTTGCGTGagtgatGCTTGTGTTTAGGATGAAATATTATTTAAGTTTTAGTGAGAATGGGTGTGAAAATTGATTTGAGGAAATTATCTTTCTGAATATTGTCATTAAACCCAGTTTCCATTTGCTTTTATTAACAAATATTAGATTTGATAGTGCTGATTTTAGTTGACTGTTTGCACATTATGAAACTGATGTCAACCCTCACTTTGATCCCGATGACAAATGCATGTGTGTACTAAAGCCTCATGTCTGCCAATGGACGCCTAGACAATAGAACCTGTGATCAACCTCAAATGCTGACAATTGTGTAACAATTATCAAAAGACAACTTGACCATTGTGTAAATGTGACCAAAAAAAACCATGAACCGGCATTGTTGACAATATTGTGGTTAAGTTCTGTATTAGGATTGGTCAGTGCTGTGTTTTCTTTTTGGGTTGCATAGTCTTgcgatgccatccttccaatccTCGTTCATCACTCAGCTATTGGAACAAAATTAAATTGTGAGAAAGCCTGGAAAACTAAGTAGGAGTTGAGTTAAAGCTACTGTTTTTTTCTTTCAGGCCTCCGGG

Function

symbol description
ypel5 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein yippee-like 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612343.2 False 1600 mRNA 0.45 3 32214451 32217570
XM_021612342.2 False 1623 mRNA 0.45 3 32214451 32217572
TU793919 False 1565 TUCP 0.46 3 32214486 32217549
TU793920 True 1521 TUCP 0.45 4 32214486 32217549

Neighbor

gene id symbol gene type direction distance location
LOC110529796 LOC106571727 coding downstream 79257 32132683 ~ 32135194 (-)
LOC110529793 LOC106571728 coding downstream 510926 31657632 ~ 31703525 (-)
LOC110529792 LOC106571729 coding downstream 608260 31602683 ~ 31606191 (-)
LOC110529791 LOC106571644 coding downstream 710461 31486817 ~ 31503990 (-)
LOC110529790 LOC106571645 coding downstream 756204 31453334 ~ 31458247 (-)
bpnt1 bpnt1 coding upstream 51523 32269095 ~ 32278234 (-)
LOC110529808 LOC106571628 coding upstream 68486 32286058 ~ 32287169 (-)
LOC110529806 LOC106571627 coding upstream 71492 32289064 ~ 32301293 (-)
LOC110529812 LOC106571726 coding upstream 88570 32306142 ~ 32322140 (-)
LOC118965610 NA coding upstream 199900 32417472 ~ 32421085 (-)
G697561 NA non-coding downstream 54403 32159223 ~ 32160048 (-)
G697560 NA non-coding downstream 55796 32158354 ~ 32158655 (-)
G697559 NA non-coding downstream 56232 32157997 ~ 32158219 (-)
G697555 NA non-coding downstream 64634 32149612 ~ 32149817 (-)
G697544 NA non-coding downstream 88540 32125696 ~ 32125911 (-)
G697604 NA non-coding upstream 7035 32224607 ~ 32224813 (-)
G697632 ppp1cb non-coding upstream 37949 32255521 ~ 32268603 (-)
G697642 NA non-coding upstream 67318 32284890 ~ 32285129 (-)
G697643 NA non-coding upstream 85298 32302870 ~ 32303081 (-)
G697644 NA non-coding upstream 85585 32303157 ~ 32305119 (-)
G696499 NA other downstream 736424 31477354 ~ 31478027 (-)
G696073 NA other downstream 1359044 30855107 ~ 30855407 (-)
G696068 NA other downstream 1367242 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 2152283 30001763 ~ 30062168 (-)
G697774 LOC106571626 other upstream 281227 32498799 ~ 32499410 (-)
G698356 NA other upstream 771673 32989245 ~ 32990061 (-)
G699468 NA other upstream 1725450 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 1805719 34017010 ~ 34029131 (-)
G701454 NA other upstream 3365426 35582998 ~ 35589877 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017787 NA non-coding NC_007131.7 CM002904.2 84692 ~ 116999 (-)
grasscarp (Ctenopharyngodon idella) G124961 NA non-coding CI01000024 null 6693450 ~ 6693721 (-)
grasscarp (Ctenopharyngodon idella) CI01000135_00158065_00158568 YPEL5, BRAFLDRAFT_262914, YPELB coding CI01000135 null 157415 ~ 158568 (-)