LOC110529812 (LOC106571726)


Basic Information

Item Value
gene id LOC110529812
gene name LOC106571726
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32306142 ~ 32322140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052856.1
gagatgactaaactgcttggagtaaccctggattgtaaactgtcatagtcaaaacatattgatacaacagtaccTAAGTTGGGGAGAAGTATGTCcgtaataaagtgctgctctgccttcttaacaacactatcaacaaagcTACTACTGTTAAGTCgtttggtcaggtgccacaaatttaagacatggcaaaatgcgtaggatttgaaattgtatttttttttttcgtCAACAAGAGTGGTTCTCTGTTCACTGTACATTTGATACTTTTCCCATTGTGTTTGGCCAAAGAGTGTTGCCCTCTTTATGTGGGTGGGTATATACTATAGCTCCTGttagtttgtttcacaataaatgtATACAAATGGATGAAAAAACACCACACTACAACAGCATTTCTAGCTCATAAAGGTGGAATCTATATGTTGAGTTTTTTCCCCCTAAAGTGTTGCCCTGAGTTTTTCTGTGAGTTATTAGCGTACATTTTTCAGGACAGTTGTAGTTTGTTTCATTGCCACGAGGTAGAGAAAAAGGTATGGATTGCGCCTTTAATACACCAAACATTCAATCACAATGAAAGACACAATGTATACACGAGGTCACTCAAATCTAATACCGACACATAAAACAACCAGGAAAATTGCCTAGAACTAAGACAGGCTAATGGAGTTTTCACATTATGAAATTCGGTTCCATGGTTCAGTTCCCTGTAGCATTTGTGAGAATTGTACAGAATAAATGTTGCTTTCAAAAGAACCCGAAAAGAACTGATTTGGGATGTGATCAGCACGACGCACATTCTACATGACGTTAGCGAGCTAGCTTGTTTACAACGGGCAAAAAAGTTCCACGCGACTGGTCTTGAATCCTGGACCCATTACTCATGCAGGTCCAGGATTAATTTCAGCCAGGGTTTGCTTGTGTTTCACACATGCTTTATACCGTGGATCAGGGTACCAAACACTCCAGGAAAATATCGTAAGGGGATATGGGAATTCATCACTTTAGAAAGTGTCAAATGTCAACAGAGAATATGTGGACGTTCCATGGGAGTTCTCTAACTGGCACAATGGAACAAAGAGAAGGATGTGAATCATGACTGCCCATGGAACGCCACACACGCACCACAACATTGATAGTGACTAAACCACACCTAGACACTAAATATCATTTTTCTTGTTCTATTGGTTGAGGTGAACGGTAAGGTTGACATGTTTTGTTCTCATGAATTGTTGTAGTGAATATGTGTCCTTGAACTATTTGGTTCATTAAAGGTCTTTGTAGCCTAGTTGTTCTAACTTTATGATGTCCATGACATGTTTAGGCATGTTTTCGCTGGTAAGGGAAAAGATACAGGATTTTATTCCCCCTTTACTGTTTATTGGGACATGGCACAATCTGGCCTACCCCTCCCAACAGAGGCCCAACCTCTATTTCCCTTTCATGCTTTCTAATCCTGCCGTAAGGGTGTCCAGAAGAACTTGTTCTCTCCCTTCGTTTATAAGACTTCGTCACTGTTTCTTATCGCTTTATTGAACTGATGAGTACCAAAAACCCAGAGAAATGTTTCACAGGTGCACAGCTCACATAGGGAGTGTAAATGAATGACATCCCCGCAGGTCTGAATACAGCATGACAAGAACAACCTGTTCACCGGTGCCAAAATGCTGTCAAGTACTTTCCTTACAGGAGCTTTGCGTATCTTCCTGTATATCGGATGTGAGGAGGGTCCTAGTGTCTGTGTGCAGACGTGTAAAAGTTGCTGATCAAGCAGACAACATCTTGAGCATTGACTCTTGGGCAGCATCCAGTCAGCCAACTCTATTCCATCACTGAGCAGAAAACACCTGTAGACAGCTgCTCCACAGAAGGAGAGTTACGGACTGGGCCAGTGAGGCCACAGCACCGCAGGAGACTACAGGTGACCGCCATCTTTAACCACCCTCTCGCTTGAACAGCTTGTGGACTAGAGTGCCAGAGACACTAAAAGCTAAAGTAAAAGCATCTGGAAATGGAACTATTTTGTTGTGTGTTTACTCATTGCCGCTTGTGTAGTCAGGCACAACCACTCTTCCCGACAGGCATTaattggtagatgggttaaaagaaaagcagacattgaatatccctttgagcatgcggaagttattaattacactttggatagaGTATAAATAAGCCCACTCACTACAAAGAtccaggcatccttcctaactcggtTGCCGGAGAAGAAAggaacagctcagggatttcacaatgaggccaatgtggattttaaaacagttagtttaatggctatgataggagagaacagaggatggatcaataacattaGTTACTCCCCAATACtaatagagtgaaaagaagaaatcctgtacagaacaaaaatatttcaaagcatgcatcctgtttgcaacaaggcaccagAGAAATACTGCAAAAAAAGTGTCAAAGCAATTAACCTTTTCTCTATAcaatgtgttatgtttggggcaaatacaacacactactgagtaccactctccatatctccaagcatagtggtggctgcatcatgttatgggtatact
>XR_005052857.1
gagatgactaaactgcttggagtaaccctggattgtaaactgtcatagtcaaaacatattgatacaacagtaccTAAGTTGGGGAGAAGTATGTCcgtaataaagtgctgctctgccttcttaacaacactatcaacaaagcTACTACTGTTAAGTCgtttggtcaggtgccacaaatttaagacatggcaaaatgcgtaggatttgaaattgtatttttttttttcgtCAACAAGAGTGGTTCTCTGTTCACTGTACATTTGATACTTTTCCCATTGTGTTTGGCCAAAGAGTGTTGCCCTCTTTATGTGGGTGGGTATATACTATAGCTCCTGttagtttgtttcacaataaatgtATACAAATGGATGAAAAAACACCACACTACAACAGCATTTCTAGCTCATAAAGGTGGAATCTATATGTTGAGTTTTTTCCCCCTAAAGTGTTGCCCTGAGTTTTTCTGTGAGTTATTAGCGTACATTTTTCAGGACAGTTGTAGTTTGTTTCATTGCCACGAGGTAGAGAAAAAGGTATGGATTGCGCCTTTAATACACCAAACATTCAATCACAATGAAAGACACAATGTATACACGAGGTCACTCAAATCTAATACCGACACATAAAACAACCAGGAAAATTGCCTAGAACTAAGACAGGCTAATGGAGTTTTCACATTATGAAATTCGGTTCCATGGTTCAGTTCCCTGTAGCATTTGTGAGAATTGTACAGAATAAATGTTGCTTTCAAAAGAACCCGAAAAGAACTGATTTGGGATGTGATCAGCACGACGCACATTCTACATGACGTTAGCGAGCTAGCTTGTTTACAACGGGCAAAAAAGTTCCACGCGACTGGTCTTGAATCCTGGACCCATTACTCATGCAGGTCCAGGATTAATTTCAGCCAGGGTTTGCTTGTGTTTCACACATGCTTTATACCGTGGATCAGGGTACCAAACACTCCAGGAAAATATCGTAAGGGGATATGGGAATTCATCACTTTAGAAAGTGTCAAATGTCAACAGAGAATATGTGGACGTTCCATGGGAGTTCTCTAACTGGCACAATGGAACAAAGAGAAGGATGTGAATCATGACTGCCCATGGAACGCCACACACGCACCACAACATTGATAGTGACTAAACCACACCTAGACACTAAATATCATTTTTCTTGTTCTATTGGTTGAGGTGAACGGTAAGGTTGACATGTTTTGTTCTCATGAATTGTTGTAGTGAATATGTGTCCTTGAACTATTTGGTTCATTAAAGGTCTTTGTAGCCTAGTTGTTCTAACTTTATGATGTCCATGACATGTTTAGGCATGTTTTCGCTGGTAAGGGAAAAGATACAGGATTTTATTCCCCCTTTACTGTTTATTGGGACATGGCACAATCTGGCCTACCCCTCCCAACAGAGGCCCAACCTCTATTTCCCTTTCATGCTTTCTAATCCTGCCGTAAGGGTGTCCAGAAGAACTTGTTCTCTCCCTTCGTTTATAAGACTTCGTCACTGTTTCTTATCGCTTTATTGAACTGATGAGTACCAAAAACCCAGAGAAATGTTTCACAGGTGCACAGCTCACATAGGGAGTGTAAATGAATGACATCCCCGCAGGTCTGAATACAGCATGACAAGAACAACCTGTTCACCGGTGCCAAAATGCTGTCAAGTACTTTCCTTACAGGAGCTTTGCGTATCTTCCTGTATATCGGATGTGAGGAGGGTCCTAGTGTCTGTGTGCAGACGTGTAAAAGTTGCTGATCAAGACAACATCTTGAGCATTGACTCTTGGGCAGCATCCAGTCAGCCAACTCTATTCCATCACTGAGCAGAAAACACCTGTAGACAGCTgCTCCACAGAAGGAGAGTTACGGACTGGGCCAGTGAGGCCACAGCACCGCAGGAGACTACAGGTGACCGCCATCTTTAACCACCCTCTCGCTTGAACAGCTTGTGGACTAGAGTGCCAGAGACACTAAAAGCTAAAGTAAAAGCATCTGGAAATGGAACTATTTTGTTGTGTGTTTACTCATTGCCGCTTGTGTAGTCAGGCACAACCACTCTTCCCGACAGGCATTaattggtagatgggttaaaagaaaagcagacattgaatatccctttgagcatgcggaagttattaattacactttggatagaGTATAAATAAGCCCACTCACTACAAAGAtccaggcatccttcctaactcggtTGCCGGAGAAGAAAggaacagctcagggatttcacaatgaggccaatgtggattttaaaacagttagtttaatggctatgataggagagaacagaggatggatcaataacattaGTTACTCCCCAATACtaatagagtgaaaagaagaaatcctgtacagaacaaaaatatttcaaagcatgcatcctgtttgcaacaaggcaccagAGAAATACTGCAAAAAAAGTGTCAAAGCAATTAACCTTTTCTCTATAcaatgtgttatgtttggggcaaatacaacacactactgagtaccactctccatatctccaagcatagtggtggctgcatcatgttatgggtatact
>XM_036985297.1
gagatgactaaactgcttggagtaaccctggattgtaaactgtcatagtcaaaacatattgatacaacagtaccTAAGTTGGGGAGAAGTATGTCcgtaataaagtgctgctctgccttcttaacaacactatcaacaaagcTACTACTGTTAAGTCgtttggtcaggtgccacaaatttaagacatggcaaaatgcgtaggatttgaaattgtatttttttttttcgtCAACAAGAGTGGTTCTCTGTTCACTGTACATTTGATACTTTTCCCATTGTGTTTGGCCAAAGAGTGTTGCCCTCTTTATGTGGGTGGGTATATACTATAGCTCCTGttagtttgtttcacaataaatgtATACAAATGGATGAAAAAACACCACACTACAACAGCATTTCTAGCTCATAAAGGTGGAATCTATATGTTGAGTTTTTTCCCCCTAAAGTGTTGCCCTGAGTTTTTCTGTGAGTTATTAGCGTACATTTTTCAGGACAGTTGTAGTTTGTTTCATTGCCACGAGGTAGAGAAAAAGGTATGGATTGCGCCTTTAATACACCAAACATTCAATCACAATGAAAGACACAATGTATACACGAGGTCACTCAAATCTAATACCGACACATAAAACAACCAGGAAAATTGCCTAGAACTAAGACAGGCTAATGGAGTTTTCACATTATGAAATTCGGTTCCATGGTTCAGTTCCCTGTAGCATTTGTGAGAATTGTACAGAATAAATGTTGCTTTCAAAAGAACCCGAAAAGAACTGATTTGGGATGTGATCAGCACGACGCACATTCTACATGACGTTAGCGAGCTAGCTTGTTTACAACGGGCAAAAAAGTTCCACGCGACTGGTCTTGAATCCTGGACCCATTACTCATGCAGGTCCAGGATTAATTTCAGCCAGGGTTTGCTTGTGTTTCACACATGCTTTATACCGTGGATCAGGGTACCAAACACTCCAGGAAAATATCGTAAGGGGATATGGGAATTCATCACTTTAGAAAGTGTCAAATGTCAACAGAGAATATGTGGACGTTCCATGGGAGTTCTCTAACTGGCACAATGGAACAAAGAGAAGGATGTGAATCATGACTGCCCATGGAACGCCACACACGCACCACAACATTGATAGTGACTAAACCACACCTAGACACTAAATATCATTTTTCTTGTTCTATTGGTTGAGGTGAACGGTAAGGTTGACATGTTTTGTTCTCATGAATTGTTGTAGTGAATATGTGTCCTTGAACTATTTGGTTCATTAAAGGTCTTTGTAGCCTAGTTGTTCTAACTTTATGATGTCCATGACATGTTTAGGCATGTTTTCGCTGGTAAGGGAAAAGATACAGGATTTTATTCCCCCTTTACTGTTTATTGGGACATGGCACAATCTGGCCTACCCCTCCCAACAGAGGCCCAACCTCTATTTCCCTTTCATGCTTTCTAATCCTGCCGTAAGGGTGTCCAGAAGAACTTGTTCTCTCCCTTCGTTTATAAGACTTCGTCACTGTTTCTTATCGCTTTATTGAACTGATGAGTACCAAAAACCCAGAGAAATGTTTCACAGGTGCACAGCTCACATAGGGAGTGTAAATGAATGACATCCCCGCAGGTCTGAATACAGCATGACAAGAACAACCTGTTCACCGGTGCCAAAATGCTGTCAAGTACTTTCCTTACAGGAGCTTTGCGTATCTTCCTGGTAGGGATCCTCTGTCTAGGAGGATTTGTGACACTGTTTTTTATGTATTACAAATCAGCTCTGGACTGTACTCCCCAGCCTCATTACTCAAAGCGACCTGAGAACAGGTCCTTGTCTAAGCAGCCAGAGCCAGAAAAGCCCATCATGCTGTTGTGGTTCTGGCCTGAAAACCGCAGGTTTGATTTTAGCGATTGTGCCACTTTCTTCAACATTGATGGCTGCCACCTGACAGATGACAGGTCTCTGTACAACAAGGCAGATGGTGTGCTCATCTTTCACAAATCCATCAAATACGATTTATCCAACTTGCCTCCATCACCTCGACCACCATTCCAGAAGTGGATTTGGTATCATGTGGAATCACCTACAAATACAATTAGGATACCTGGTCTAGATAACCTTTTCAATTTAACCTTGAGTTATAGGGAAGACGCAGACATCCCTGTGCGTTGGCGCTTGACCGTAAGGAAAGGCCAGGGTGAGGACTTTGTGCTGCCCAAGAAGGATAAATTAGTTTGCTGGATTGTGAGCAACAATGACCCTACCACTGGAACAGGGGTAAGGCACAAATATTACAGAGACCTTGTAAAACACATTAAGGTGGAACTCTTTGGCACAGCCTTTGCTAGATTCTTGAAATATGAGGACTACTACTCAACACTCTCCAGCTGTAAGTTCTACCTCTCCTTTGAGAACTCGGTCCACAAAGACTACATCACAGAGAAGCTAAACGGACCACTTGCAGCAGGAACAGTGCCAGTAGTATTGGGCCCACCGAGACAGAACTATGAAGACTTTGTCCCAGGAGATTCCTTCATCCATATTAATGACTTTCCCGATGCAAAAGCCCTGGCGGAATTCCTCCTCAAGTTGGACAAGGATGATGAGGCATATCTGCGCTACTTTCAGTGGCGTAGAAACTTTTCTGCTCAGCAACATCTGGTTCAACTGAGTCAAGAGTTCATTCAAGCTATTTGCTATGCCTGTGACCACATAGGCAAACATTGGGAGTACAGGGTTGTTCACGATGTTTACAAATGGTATTTTGGTTAATCAGTCACTTACATCCTCATCGGTGTATGTGCTGTTACCACTATATTACCCTCTTCTCTCCGTGTACAGTATCATGTGGAATTTAGTCACACCCAGCATCCCACATTAGCAACGTTTACACAGTGCCTTTACGACCTATTGCACTACTTGTAAGATAAGTGTACCTGGTTGTTTTACTGTACTAGTGTCATAGCTAGGTATTTAAGTATCCAGAACCATTCAGGCTCTTATCTTTATAACTACCGAACAACTAACCTCTGCACTATTTATTGTCTGAATTActacctgtatgtgtgttttataTCTTTACACTCACACATTTTGAGCTGAAATAATTAAAGGGTAGTTCCACCATTTTTAAAAATgatctccagcacaataccagtgtctacaAACGT

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052856.1 False 2570 mRNA 0.41 5 32306142 32322140
XR_005052857.1 False 2567 mRNA 0.41 5 32306142 32322140
XM_036985297.1 True 3160 mRNA 0.42 2 32318440 32322140

Neighbor

gene id symbol gene type direction distance location
LOC110529806 LOC106571627 coding downstream 4849 32289064 ~ 32301293 (-)
LOC110529808 LOC106571628 coding downstream 18973 32286058 ~ 32287169 (-)
bpnt1 bpnt1 coding downstream 27908 32269095 ~ 32278234 (-)
LOC110529804 ypel5 coding downstream 88570 32214451 ~ 32217572 (-)
LOC110529796 LOC106571727 coding downstream 170948 32132683 ~ 32135194 (-)
LOC118965610 NA coding upstream 95332 32417472 ~ 32421085 (-)
LOC110531086 LOC106571620 coding upstream 240991 32563131 ~ 32569877 (-)
cep43 LOC106571617 coding upstream 247876 32570016 ~ 32589888 (-)
myt1la LOC106571614 coding upstream 268158 32590298 ~ 32638849 (-)
LOC110529818 rnaseh1 coding upstream 348605 32670745 ~ 32682526 (-)
G697644 NA non-coding downstream 1023 32303157 ~ 32305119 (-)
G697643 NA non-coding downstream 3061 32302870 ~ 32303081 (-)
G697642 NA non-coding downstream 21013 32284890 ~ 32285129 (-)
G697632 ppp1cb non-coding downstream 37539 32255521 ~ 32268603 (-)
G697604 NA non-coding downstream 81329 32224607 ~ 32224813 (-)
G697649 NA non-coding upstream 2671 32324811 ~ 32325062 (-)
G697651 NA non-coding upstream 6678 32328818 ~ 32330202 (-)
G697671 NA non-coding upstream 42345 32364485 ~ 32364689 (-)
G697672 NA non-coding upstream 42780 32364920 ~ 32365217 (-)
G697683 NA non-coding upstream 62213 32384353 ~ 32384604 (-)
LOC110529793 LOC106571728 other downstream 626407 31657632 ~ 31703525 (-)
G696499 NA other downstream 828115 31477354 ~ 31478027 (-)
G696073 NA other downstream 1450735 30855107 ~ 30855407 (-)
G696068 NA other downstream 1458933 30846902 ~ 30847209 (-)
G697774 LOC106571626 other upstream 176659 32498799 ~ 32499410 (-)
G698356 NA other upstream 667105 32989245 ~ 32990061 (-)
G699468 NA other upstream 1620882 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 1701151 34017010 ~ 34029131 (-)
G701454 NA other upstream 3260858 35582998 ~ 35589877 (-)

Expression


Co-expression Network