LOC110529850 (fau)


Basic Information

Item Value
gene id LOC110529850
gene name fau
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35302554 ~ 35304730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612451.2
TTGTAACATGACTCCTCTAGAAATTTAATAGGATCTCCATGGTTCTCTTCTTGTCAACGTCACACATTGACACATGCGCACCGCCGACGCTCCCTCAGTCCTTTTTTAACATAGTGTTGAACGACTAGCATCAAACGAGCATCAAGATGCAGCTCTTCTTGCGTGCCCAGAACACTCACACCCTTGAGGTGACAGGACAGGAGACTGTCCGAGATGTCAAGGTTCATGTCCAGAGTCTGGAGGGTCTCCTAGTGGAGGACCAGGTGTTGTTGCTGGCCGGCTCCCCCCTGGAGGATGCTTCCTCTCTGGTGGAATGTGGCATCTCTGAGCACTGCACCCTGGAGGTGGCCGGCAGACTGCTGGGAGGAAAGGTCCATGGCTCCCTGGCCCGTGCTGGTAAAGTGAGGGGACAGACACCCAAGGTTGACaaacaggagaagaagaaaaagaagactgGTCGTGCCAAGCGCCGCATCCAGTACAACAGGCGCTTCGTCAATGTTGTGCCCACCTTCGGCAAGAAGAAGGGCCCCAACGCCAACTCCTAAAAACACTGTCCCCCAGGAGAATGCTTGTGATCACACCCTTTCATTTTAACCCACTGAAAGGTTTTCctcctgtacagaataaaaatttGGCTTAGACTAAAGAACAA

Function

symbol description
fau A structural constituent of ribosome. Involved in antimicrobial humoral immune response mediated by antimicrobial peptide and defense response to other organism. Located in cytosolic ribosome and extracellular space. Part of cytosolic small ribosomal subunit.

NR:

description
ubiquitin-like protein FUBI

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02983 RP-S30e, RPS30; small subunit ribosomal protein S30e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612451.2 True 655 mRNA 0.52 5 35302554 35304730

Neighbor

gene id symbol gene type direction distance location
LOC118965512 NA coding downstream 503250 34797845 ~ 34799304 (-)
LOC110529848 LOC106571583 coding downstream 752426 34545156 ~ 34550128 (-)
LOC110529843 LOC105030678 coding downstream 1045292 34255515 ~ 34257262 (-)
LOC110529846 LOC106571592 coding downstream 1144917 34136558 ~ 34157637 (-)
ankef1a LOC106571587 coding downstream 1273423 34017010 ~ 34029131 (-)
LOC110529851 prpf39 coding upstream 2198 35306928 ~ 35321805 (-)
LOC110529854 LOC106571577 coding upstream 121586 35426316 ~ 35429137 (-)
LOC110529855 LOC106571575 coding upstream 157543 35462273 ~ 35473852 (-)
LOC110529861 LOC106571572 coding upstream 232959 35537689 ~ 35546844 (-)
LOC110529862 LOC106571571 coding upstream 248678 35553221 ~ 35608497 (-)
G701291 NA non-coding downstream 7218 35289149 ~ 35295336 (-)
G701204 NA non-coding downstream 114551 35187594 ~ 35188003 (-)
G701190 NA non-coding downstream 129036 35173298 ~ 35173518 (-)
G701151 NA non-coding downstream 183790 35110954 ~ 35118764 (-)
G701052 LOC106571582 non-coding downstream 319777 34966530 ~ 34982777 (-)
G701353 NA non-coding upstream 106211 35410941 ~ 35411158 (-)
G701362 NA non-coding upstream 153322 35458052 ~ 35502645 (-)
G701395 NA non-coding upstream 355620 35660350 ~ 35679252 (-)
G701486 NA non-coding upstream 417343 35722073 ~ 35722772 (-)
G699468 NA other downstream 1350198 33943022 ~ 33952356 (-)
G698356 NA other downstream 2312493 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 2803144 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 3085005 32214451 ~ 32217572 (-)
G701454 NA other upstream 278268 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 336625 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 595893 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 2050366 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 2184497 37474229 ~ 37626960 (-)

Expression


Co-expression Network