LOC110529851 (prpf39)


Basic Information

Item Value
gene id LOC110529851
gene name prpf39
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35306928 ~ 35321805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612453.2
TGTGGTAACTATTGAGAACGTTACGCATGCGCACATTCTGTCTGCCCTTCCGAAGCCTCCTCAAAGTTGTTGCTGGAGAATGAGAGTAGAAACGCGGCTACATGTTGTTGGTTAGATACGTTTAAAGTAACAGAAATACACATTTGTCTAAACTGAATTTCATGGAAGATACTGACCTGCACCTCTCAGACGAGCCCATGACGGGGATGTTGGACACAGACAGCCCTGAGAGTGTGGAGTCCCCAGCCATGGAGGGCAACGGAGAGGACTTCCTCCCTGACCTGCCTGTCCTCACGCATGCTGCTGAATGGACCATGGATCAGGATCCCCATAACCTCACCACGGTTATCCACGACTCGGACTCAGAGTCAGATCAGTCGTCGCCAGAGGTAATAGAGCAGCACCAGGTCCAGCagtctgatctaggatctgttgaACAGGCGGTGCAGCACTTCCAGCTAGCGAGCGCTGAACTCTTCCAAGATGAGCGTCGGGAGCATGAGGATTCAGATGAGCAGTCTCGTTCTCCACAGGCAGAACAACAGAATCAAATGGAGGCATCGTCAGACGAGAGTCAGGATGGGCACAACAACACAGCCACAGAGCCTTTGATACAGAGCGAGAAGTTGTCTGACGCTGGAGAACAGCAACAAGATCCAGTCCAAGCCCAGCCACCAATGGTTGCAGAAGATAGTAGCCCAGCTAACATGGAACTTGAAGAATCCAAAGAGACAGAGCAGGTGGACCCTGTTGAGGAACCAGCTGTCCCTACAGAGCCTCTTATCCCTTCTGAGTATGAGAAGCTGGCTAAAGGGTGTGAGGAGAACCCCGAAGACTTCAATGGTTGGGTCTACCTGCTGCAGTATGTGGAGCAAGAGAATCATCTTGGTGTGGTGAGGAAGGCGTTTGATGCGTTTTTCTTGCGCTACCCCTACTGCTACGGCTACTGGAAGAAGTTAGCTGACACTGAGAAGAAACATGGCAATGCACAGGTGGCAGAGGAGGTGTACCGGCGGGGTGTGCATGCCATCCCCCTCAGTGTGGACCTGTGGCTCCACTACCTGTCCTTCATCAAGGACAACGCTGACCCTGAAGACCCAGAGACACCGTCACGCATTAGAGCTGCGTATGAGCATGCTGTGTTGGCAGCAGGGACAGACTTCCGCTCTGACCGTCTGTGGGAGGCCTACATCAACTGGGAGACGGAGCAGGAGAGATTGGCCAACGTCACGGCCATCTACGATCGTATCCTGGGCATACCCACCCAGCTCTACTCACAGCACCTCCAGAGGTTCAAAGAGCATGTGCAGAACAACAACCCCAAACACTTCCTGTCGGAGGAGGAGTTTGTCCAGCTCAGGGTGGAGCTAGCCAAAGCCAATGCAGTCACAGTCAATGAGGATGGAGAGGAAGCAACACCCGCAGAGCCTGAGGGACTCCCAGCCGGCACCGAGGACCTCCCAGATCCTGCTAAGAGAGTGACGGAGATTGAGAACATGCGCCACAAGGTGATCGAGTTGCGTCAGGAGGTGTTCAACCAAAACGAGCAGGAGGTCAGCAAGCGCTGGGCCTTCGAGGAGGGGATAAAACGGCCCTACTTCCACGTTAAAGCCCTGGAGAAGACCCAGCTCAGCAACTGGAAGGAGTATCTGGAATTTGAGATCGAGAATGGCACTCCCGAACGCGTGGTCGTTTTGTTCGAACGCTGCCTCATCGCCTGTGCTCTCTACGAGGACTTCTGGATGAAGTACGCAAAATATCTAGAGAGCTACAGCATTGAGGGAGTGAGACATGTGTACAAGAAGGCGTGTACCATCCACCTATCCAAGAAGCCCAACATTCACCTGCTGTGGGCTGCGTTCGAGGAGCAGCAGGGGAACATAGAGGAGGCGCGCGGCATCCTGAAGTCTCTGGAAGAGGTGGTACCGGGCCTGGCCATGGTGCGTCTGCGGCGGGTCAGCCTGGAACGTCGCCACGGCAACCTGGAGGAGGCAGAGGCCCTGCTGAGCGAGGCGATGGCATCGGGGAAGAACGCCAGCGAGACGTCATTCTACGCCGTGAAGCTGGCCCGGCAGCTGCTGAAGGTGCAGAGGAGCCTCACCAAGGCCCGCAAGGTGTTGCTGGAAACCATAGACAAGGACCAGacGAGTCCTAAGCTGTACCTGAACCTGCTAGAGCTGGAGTACAGTGGGGACGTGCAGCAGAATGAGGCTGAAATCTTGGCCTGCTTCGACCGCGCCCTGAGCAGCCCGCTGCCCCTCGACTGCCGCCTCACCTTCTCTCAGCGCAAGGTCGAGTTCCTCGAGGACTTTGGCAGCGACATCAATAAGTTAGTGACTGCATACGATGAACACCAGAAGCTTCTGAAAGAACATGAGTCGACAAAGAGGAAAGCAGAGAATGGCTCCCAGGAGCCCGAGTCGAAGAGACAGCGTACAGATGACCACCCAGGCTCAGGGCACATGATGCAGGGAGACAACTCTGCCTACAACTACAACTGGTACCAACAACAGTACAATAACTGGGGCCAGCATTCCTGGGGACAGTACAACCAGTATGCCCAGCAGTATAACCAGTACTACCCCCCTCCACCAACATGATGTTTCAAAGACCGATAGACAGAGATCCTTCCGAAGGAAGAAATTCAGAGGAAGCATCCTTTCTACCCAGCCCAACCTCTCAGCTCAGCTCCTCTTTGATTTGTTGTTTATGTCCTTTTGTTTCCATTGGCCATTTGACATATTCATTGTAATCACCATCTCACCATCATTCATTGACTGGCTGTTTTTTGTGTTCTTTACGCATGTGTTGGTAATGCGGACTTCAGATTATTATTTGTTTTCCCCCCACAGTCAAAATTACGCCAAATTATATGTTTTTAATTTTAGATTGGTTCCTCTTCGATATCTCTGTGTGGGGAAACTAGTTATGTTTGATACAGATTATAGATTCGTATGGAGGTAGTGATACCTGCTGTGCTCCGAGTCCTCCCTCAGCCTCTTCTCTGCTTTCCTAAGATTAAGGGTTTTGTTTTCTGGGACAAGAACAGAAATGAATGAAgattctttttcttttttttgactTAATTTCATAATAAAGACATTATcctatt

Function

symbol description
prpf39 Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39).

NR:

description
pre-mRNA-processing factor 39-like

GO: NA

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612453.2 True 3112 mRNA 0.52 15 35306928 35321805

Neighbor

gene id symbol gene type direction distance location
LOC110529850 fau coding downstream 2198 35302554 ~ 35304730 (-)
LOC118965512 NA coding downstream 507624 34797845 ~ 34799304 (-)
LOC110529848 LOC106571583 coding downstream 756800 34545156 ~ 34550128 (-)
LOC110529843 LOC105030678 coding downstream 1049666 34255515 ~ 34257262 (-)
LOC110529846 LOC106571592 coding downstream 1149291 34136558 ~ 34157637 (-)
LOC110529854 LOC106571577 coding upstream 104511 35426316 ~ 35429137 (-)
LOC110529855 LOC106571575 coding upstream 140468 35462273 ~ 35473852 (-)
LOC110529861 LOC106571572 coding upstream 215884 35537689 ~ 35546844 (-)
LOC110529862 LOC106571571 coding upstream 231603 35553221 ~ 35608497 (-)
LOC110529864 LOC106571569 coding upstream 306347 35628152 ~ 35632437 (-)
G701291 NA non-coding downstream 11592 35289149 ~ 35295336 (-)
G701204 NA non-coding downstream 118925 35187594 ~ 35188003 (-)
G701190 NA non-coding downstream 133410 35173298 ~ 35173518 (-)
G701151 NA non-coding downstream 188164 35110954 ~ 35118764 (-)
G701052 LOC106571582 non-coding downstream 324151 34966530 ~ 34982777 (-)
G701353 NA non-coding upstream 89136 35410941 ~ 35411158 (-)
G701362 NA non-coding upstream 136247 35458052 ~ 35502645 (-)
G701395 NA non-coding upstream 338545 35660350 ~ 35679252 (-)
G701486 NA non-coding upstream 400268 35722073 ~ 35722772 (-)
ankef1a LOC106571587 other downstream 1283043 34017010 ~ 34029131 (-)
G699468 NA other downstream 1354572 33943022 ~ 33952356 (-)
G698356 NA other downstream 2316867 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 2807518 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 3089379 32214451 ~ 32217572 (-)
G701454 NA other upstream 261193 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 319550 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 578818 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 2033291 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 2167422 37474229 ~ 37626960 (-)

Expression


Co-expression Network