LOC110529854 (LOC106571577)


Basic Information

Item Value
gene id LOC110529854
gene name LOC106571577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35426316 ~ 35429137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612459.2
gacagacagagcatcATCAGTCCACAAGGACAGCTGGGGGTCTCCGGTCTGCTTTAAGAGCACTGGGCGTACAGGGCGACGCTCATTTTTTAAATTCACCTCGCTGTGTAAAGACTGTGTAACGACTCCAGCGAAAAACCAAGGACTTATCGTCTAACCAAAACAACCTTCTCTCTTTCCTGTCGTGCTCTGTTCAGGTATTGGACAGAATAATTGAGAAGAACCCAACTCTTGAGGACTCAACTAAAAGGGTATTTTTATAGAACTTTCTGTTTTCAAAATTCTCTCCAACTTTGCCCTTCGATCGGAGGCTAGAATGATGTCTTATCTGAAGCAGCCACCTTATACAGTCAACGGCCTGAGTTTGTCTGCCTCCGGGATGGACCTACTCCATCCGTCTGTCGGCTATCCAGCCACCCCTCGTAAACAGAGGCGAGAGAGGACGACCTTTACGCGTGCTCAGCTGGACATTCTGGAGAACTTGTTCGCCAAGACGCGCTACCCAGACATCTTCATGCGCGAGGAGGTGGCCCTGAAGATCAACCTACCTGAGTCTCGTGTTCAGGTATGGTTTAAAAACCGACGGGCGAAGTGTCGCCAGCAGGCACAGCAGTCACAGAGCGGCGCGCAGAGCAAGACCAGACCCGTCAAGAAGAAAAGTTCCCCCATCAGAGAAGCCAGCTCAGAGAGCGGTGCCAGCGGCCAATTCACACCGCCCCCCAGCACCTCAATCCCGGCCGTGAGCAGCAGCAGTGCACCGGTGTCCATCTGGAGCCcggcctccatctctcctctctctgacccactctctacctcctcctcctcttgtaTGCAACGGTCGTACCCGATGACCTACACCCAGGCGTCCGGATACAGCCAGGGCTACACCGGATCCTCATCGTATTTCAGCGGGATGGACTGCGGGTCTTACTTGGCGCCTATGCACCACCAGCTCTCCACGGCGGGCTCCACAATGAGCCCCATGGGCAGCAACGGGGTATCCAGCCACCTGAGCCCGGCTTCTTCCCTCGCCACGCAGGGTTATGGGGCAGCGGGACTGGGCTTCAGCGGTCCCACAGACTGCCTGGATTACAAAGACCAGGCCGCGGCCTGGAAACTCAACTTCAACGCGGATTGTTTGGATTACAAAGACCAGTCGTCGTGGAAATTTCAGGTGTTGTGAGAAGAATGAGTGAATTACATTATCTTTTCACAATGTGGTGAAATAAAGGCCAGTCAATCCGGTGGGCCCAGGTTGGCAGTGAATGAGTCGCCGAAAGGGAACGTTTTCCAACGACTGGGCCTTAGTGTCTGTCAAACTATTaccccagcagcagcagtgggagaggaggggagctgccgctctgtctgtctgtctgactgcgtCACACCTGTTGggttaatttattgaaaattcaGAGTGAACTCTGTTTAACTTTGATCAAGGACATGGAACAAAATTGTTACCCAAGAAGAAAATGATCAAGAGAAGTTCCAAACCTCGGTTAAGCGCGTGGAATTGGTCAGCTTTCCATAAGCTTCTTACGACTCCCCGACCCTCTCCTCTTGGTTGGCAAGCTAAAGGGGCCCTTTGATCAAAGcattgtgcgtgcgtgcgtatgtgtgtgtgtgtacccgcaCATCTCTGTGCGCGCGCCATTGAGGCGAACCTGGATGCACTATTTAATTTATGAAAAATGCTTATAAGACATTAGTTACAAGAGACAATCAACCAGTATTCGTGTGCTCATAAATGTCCCACTACGTGTTTTTCATCTTCTCTATCATTGTTAGCTTTTTGAGACTGTGATTCCTTGTATGCAATTCTGAGTTTCCCATCTGCGATCACCCAGCTGtgaatggataaaaaaaaaaattccaagTGTTTCAAATGATAAGTTATTATGATGAAATATTAGTTGAAATAGGGAGTTCTCAAACAGTGTGAGTGGCGGAGTCAATGAACAGCAACGTTGCCTGAAACATCAGTGTCCATCAATGACCAAATACAGCTCAAGGTTGTTATGCCAAACTGCCAAGCACACAAATAAAGAACGTTTGAACTGA

Function

NR:

description
homeobox protein OTX2-like

GO: NA

KEGG:

id description
K09326 OTX1; homeobox protein OTX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612459.2 True 2067 mRNA 0.50 3 35426316 35429137

Neighbor

gene id symbol gene type direction distance location
LOC110529851 prpf39 coding downstream 104511 35306928 ~ 35321805 (-)
LOC110529850 fau coding downstream 121586 35302554 ~ 35304730 (-)
LOC118965512 NA coding downstream 627012 34797845 ~ 34799304 (-)
LOC110529848 LOC106571583 coding downstream 876188 34545156 ~ 34550128 (-)
LOC110529843 LOC105030678 coding downstream 1169054 34255515 ~ 34257262 (-)
LOC110529855 LOC106571575 coding upstream 33136 35462273 ~ 35473852 (-)
LOC110529861 LOC106571572 coding upstream 108552 35537689 ~ 35546844 (-)
LOC110529862 LOC106571571 coding upstream 124271 35553221 ~ 35608497 (-)
LOC110529864 LOC106571569 coding upstream 199015 35628152 ~ 35632437 (-)
LOC110529865 LOC106571568 coding upstream 204336 35633473 ~ 35705333 (-)
G701353 NA non-coding downstream 15158 35410941 ~ 35411158 (-)
G701291 NA non-coding downstream 130980 35289149 ~ 35295336 (-)
G701204 NA non-coding downstream 238313 35187594 ~ 35188003 (-)
G701190 NA non-coding downstream 252798 35173298 ~ 35173518 (-)
G701151 NA non-coding downstream 307552 35110954 ~ 35118764 (-)
G701362 NA non-coding upstream 28915 35458052 ~ 35502645 (-)
G701395 NA non-coding upstream 231213 35660350 ~ 35679252 (-)
G701486 NA non-coding upstream 292936 35722073 ~ 35722772 (-)
G701522 NA non-coding upstream 303104 35732241 ~ 35732648 (-)
ankef1a LOC106571587 other downstream 1402431 34017010 ~ 34029131 (-)
G699468 NA other downstream 1473960 33943022 ~ 33952356 (-)
G698356 NA other downstream 2436255 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 2926906 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 3208767 32214451 ~ 32217572 (-)
G701454 NA other upstream 153861 35582998 ~ 35589877 (-)
G701618 LOC106571560 other upstream 471486 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 1925959 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 2060090 37474229 ~ 37626960 (-)

Expression


Co-expression Network