LOC118936680 (LOC106571560)


Basic Information

Item Value
gene id LOC118936680
gene name LOC106571560
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35901651 ~ 35906701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985395.1
GCGTGTGTGGATTCCTGCTATAGCTGTCTAGCTGTCACTTCAACAACCTGGTTCTACAGTGTTACATCTGAGAAGCGCAGTGAATAACAGGGGACCATGGCTGCAACACTGCTTCCGTTTCTGATGAAGATAAAAAATCGTAGTGATGCTGTTCTCTCTTTACTTACAGATACTATGGAAGGAAGCAACGGTATCTGGCCCAGTCAGAAGCAACCAGGGGGTCTTGTCTGGTCGACACAGCCTGGCCAACAGCCCACCCAACCCCAGGCCATGCCCTGTTTTCCTGGGCAGCCCAGCACCCCCTGCTGGCCTGGTCCACAACCATCCCAACCAGCCCCAACTCCGGCTCAACCTCAGCCAATGCCCTGTTTTCCTGGGCAGCCCAACACCCCCTGCTGGCCTGGGCAACAGCCATCCCAACCAGCCCCAGCTCCAACCCAAAACTGGAACTGGCCTGGTCCGCAACCATCCCCAGCTCCATCCCTAAACTGGCCTGGTCCCCAACCACAACCATCCCCAGCCCATTCCTGCCAGCCATGCTGGCCTGGACCCCATCCCCAGCCTCCCCAATTCCAGCCTCAGCCTACACCCCAGCATTTTCAACCTCAAGGCCCAGCTCTGATTCAAGCCCAGGCCCAGGGCCCCAGTCAGCCTAGTGTCCCAGGGTGGCCAGTCCCAGGCCTTAGCCCAAGCGTTAACCCAGGGTCTGGATGGCCATTAGGCCCTGTTCAGGACACAGATGGCTTCACACCTGCTCCACAGTGGAATCCGACACCAGCTGGATTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTCAACTTCCTGCGAGGTAAAGACATCGCCTTCCACCTCAACTCTCGGTTCAGTGAGGGGGGCAAGCAGGCAGTGGTGAGGAACACCAAGGTGGGAGAGcgctgggggaaggaggagaggcacACACAAGGAAGTTTCCCCTTCATGGCAGGACAGTCCTTTGAGATGAAGATTCTGGTTACATCTGGGGAGTTCAAGGTGGCTGTGAACAGAGCACAGCTGTTTGAGTTTAAACACCGTGTCAGAGAACTCAGCCAGATCGATCGCGTCAACATCCTCTATGATGTCATCCTCACCTCCATCAACGTAGAAACAATGCCATgacacccacatacagtatataacaccCAGCAGAGGCTACATGCATAACATGGCATCAATCTGCATTTGTCTTTGCACCCGTTTTATGATGATAATGAGCTGTACACTTAAAACCACATTAATTCCCACTAACAAACACTCCATCTGCAAATGTGTGTAATGTTAAAAGGCCTAAGAATTCAACACTGCCATTTAATGGTAATTCTTATATTTCATAACTTTTTTCTGTTGAATgtctatataaatatacatacttTATGACTTTGAACTGACTAAAGATATCAGTAGTTACAGAACGTCTCTATATGAGAGGATTCAGCGTCCTTCAGGGGTCGTTTTTAGAATCTAACCAGCTGGGTTAATTTTTGCCACTGTCAATCAGTTGGTAGAgtatggcgcttgcaacgccagggttgtgggttcgatacCCATGGTAGAACAGTATggtaaaaaagtatgaaaatgtatgcacgcactactataagtcgctctggataagagcgcctgctaaatgactaaaatgtcaaatgtaaaattGTATGAAATAAAACCATTAAATTGAATGAAGTT
>XM_036985397.1
ATGCGTGTGTGGATTCCTGCTATAGCTGTCTAGCTGTCACTTCAACAACCTGGTTCTACAGTGTTACATCTGAGAAGCGCAGTGAATAACAGGGAAGCAACGGTATCTGGCCCAGTCAGAAGCAACCAGGGGGTCTTGTCTGGTCGACACAGCCTGGCCAACAGCCCACCCAACCCCAGGCCATGCCCTGTTTTCCTGGGCAGCCCAGCACCCCCTGCTGGCCTGGTCCACAACCATCCCAACCAGCCCCAACTCCGGCTCAACCTCAGCCAATGCCCTGTTTTCCTGGGCAGCCCAACACCCCCTGCTGGCCTGGGCAACAGCCATCCCAACCAGCCCCAGCTCCAACCCAAAACTGGAACTGGCCTGGTCCGCAACCATCCCCAGCTCCATCCCTAAACTGGCCTGGTCCCCAACCACAACCATCCCCAGCCCATTCCTGCCAGCCATGCTGGCCTGGACCCCATCCCCAGCCTCCCCAATTCCAGCCTCAGCCTACACCCCAGCATTTTCAACCTCAAGGCCCAGCTCTGATTCAAGCCCAGGCCCAGGGCCCCAGTCAGCCTAGTGTCCCAGGGTGGCCAGTCCCAGGCCTTAGCCCAAGCGTTAACCCAGGGTCTGGATGGCCATTAGGCCCTGTTCAGGACACAGATGGCTTCACACCTGCTCCACAGTGGAATCCGACACCAGCTGGATTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTCAACTTCCTGCGAGGTAAAGACATCGCCTTCCACCTCAACTCTCGGTTCAGTGAGGGGGGCAAGCAGGCAGTGGTGAGGAACACCAAGGTGGGAGAGcgctgggggaaggaggagaggcacACACAAGGAAGTTTCCCCTTCATGGCAGGACAGTCCTTTGAGATGAAGATTCTGGTTACATCTGGGGAGTTCAAGGTGGCTGTGAACAGAGCACAGCTGTTTGAGTTTAAACACCGTGTCAGAGAACTCAGCCAGATCGATCGCGTCAACATCCTCTATGATGTCATCCTCACCTCCATCAACGTAGAAACAATGCCATgacacccacatacagtatataacaccCAGCAGAGGCTACATGCATAACATGGCATCAATCTGCATTTGTCTTTGCACCCGTTTTATGATGATAATGAGCTGTACACTTAAAACCACATTAATTCCCACTAACAAACACTCCATCTGCAAATGTGTGTAATGTTAAAAGGCCTAAGAATTCAACACTGCCATTTAATGGTAATTCTTATATTTCATAACTTTTTTCTGTTGAATgtctatataaatatacatacttTATGACTTTGAACTGACTAAAGATATCAGTAGTTACAGAACGTCTCTATATGAGAGGATTCAGCGTCCTTCAGGGGTCGTTTTTAGAATCTAACCAGCTGGGTTAATTTTTGCCACTGTCAATCAGTTGGTAGAgtatggcgcttgcaacgccagggttgtgggttcgatacCCATGGTAGAACAGTATggtaaaaaagtatgaaaatgtatgcacgcactactataagtcgctctggataagagcgcctgctaaatgactaaaatgtcaaatgtaaaattGTATGAAATAAAACCATTAAATTGAATGAAGT
>XM_036985396.1
ATATGCGTGTGTGGATTCCTGCTATAGCTGTCTAGCTGTCACTTCAACAACCTGGTTCTACAGTGTTACATCTGAGAAGCGCAGTGAATAACAGATACTATGGAAGGAAGCAACGGTATCTGGCCCAGTCAGAAGCAACCAGGGGGTCTTGTCTGGTCGACACAGCCTGGCCAACAGCCCACCCAACCCCAGGCCATGCCCTGTTTTCCTGGGCAGCCCAGCACCCCCTGCTGGCCTGGTCCACAACCATCCCAACCAGCCCCAACTCCGGCTCAACCTCAGCCAATGCCCTGTTTTCCTGGGCAGCCCAACACCCCCTGCTGGCCTGGGCAACAGCCATCCCAACCAGCCCCAGCTCCAACCCAAAACTGGAACTGGCCTGGTCCGCAACCATCCCCAGCTCCATCCCTAAACTGGCCTGGTCCCCAACCACAACCATCCCCAGCCCATTCCTGCCAGCCATGCTGGCCTGGACCCCATCCCCAGCCTCCCCAATTCCAGCCTCAGCCTACACCCCAGCATTTTCAACCTCAAGGCCCAGCTCTGATTCAAGCCCAGGCCCAGGGCCCCAGTCAGCCTAGTGTCCCAGGGTGGCCAGTCCCAGGCCTTAGCCCAAGCGTTAACCCAGGGTCTGGATGGCCATTAGGCCCTGTTCAGGACACAGATGGCTTCACACCTGCTCCACAGTGGAATCCGACACCAGCTGGATTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTCAACTTCCTGCGAGGTAAAGACATCGCCTTCCACCTCAACTCTCGGTTCAGTGAGGGGGGCAAGCAGGCAGTGGTGAGGAACACCAAGGTGGGAGAGcgctgggggaaggaggagaggcacACACAAGGAAGTTTCCCCTTCATGGCAGGACAGTCCTTTGAGATGAAGATTCTGGTTACATCTGGGGAGTTCAAGGTGGCTGTGAACAGAGCACAGCTGTTTGAGTTTAAACACCGTGTCAGAGAACTCAGCCAGATCGATCGCGTCAACATCCTCTATGATGTCATCCTCACCTCCATCAACGTAGAAACAATGCCATgacacccacatacagtatataacaccCAGCAGAGGCTACATGCATAACATGGCATCAATCTGCATTTGTCTTTGCACCCGTTTTATGATGATAATGAGCTGTACACTTAAAACCACATTAATTCCCACTAACAAACACTCCATCTGCAAATGTGTGTAATGTTAAAAGGCCTAAGAATTCAACACTGCCATTTAATGGTAATTCTTATATTTCATAACTTTTTTCTGTTGAATgtctatataaatatacatacttTATGACTTTGAACTGACTAAAGATATCAGTAGTTACAGAACGTCTCTATATGAGAGGATTCAGCGTCCTTCAGGGGTCGTTTTTAGAATCTAACCAGCTGGGTTAATTTTTGCCACTGTCAATCAGTTGGTAGAgtatggcgcttgcaacgccagggttgtgggttcgatacCCATGGTAGAACAGTATggtaaaaaagtatgaaaatgtatgcacgcactactataagtcgctctggataagagcgcctgctaaatgactaaaatgtcaaatgtaaaattGTATGAAATAAAACCATTAAATTGAATGAAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06831 LGALS3; galectin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985395.1 False 1773 mRNA 0.50 6 35901651 35906697
XM_036985397.1 False 1684 mRNA 0.50 5 35901652 35906699
XM_036985396.1 True 1697 mRNA 0.50 6 35901652 35906701

Neighbor

gene id symbol gene type direction distance location
LOC110529866 LOC106571566 coding downstream 103631 35708041 ~ 35798020 (-)
LOC110529865 LOC106571568 coding downstream 196318 35633473 ~ 35705333 (-)
LOC110529864 LOC106571569 coding downstream 269214 35628152 ~ 35632437 (-)
LOC110529862 LOC106571571 coding downstream 331844 35553221 ~ 35608497 (-)
LOC110529861 LOC106571572 coding downstream 354807 35537689 ~ 35546844 (-)
LOC110529868 LOC106571561 coding upstream 9539 35916240 ~ 35920906 (-)
LOC110529870 LOC106571558 coding upstream 146235 36052936 ~ 36059371 (-)
LOC110529235 plcb4 coding upstream 156836 36063537 ~ 36206480 (-)
LOC110529236 plcb1 coding upstream 309533 36216234 ~ 36490738 (-)
LOC110529872 LOC106571739 coding upstream 637114 36543815 ~ 36552132 (-)
G701552 NA non-coding downstream 102072 35798798 ~ 35799579 (-)
G701538 NA non-coding downstream 132438 35768175 ~ 35769213 (-)
G701537 NA non-coding downstream 135213 35766223 ~ 35766438 (-)
G701536 NA non-coding downstream 135630 35765802 ~ 35766021 (-)
G701533 NA non-coding downstream 139713 35761708 ~ 35761938 (-)
G701966 NA non-coding upstream 25633 35932334 ~ 35956729 (-)
G702011 NA non-coding upstream 97542 36004243 ~ 36006929 (-)
G702014 NA non-coding upstream 102791 36009492 ~ 36009856 (-)
G702017 NA non-coding upstream 109174 36015875 ~ 36016190 (-)
G702020 NA non-coding upstream 113192 36019893 ~ 36020104 (-)
G701454 NA other downstream 311774 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 1877766 34017010 ~ 34029131 (-)
G699468 NA other downstream 1949295 33943022 ~ 33952356 (-)
G698356 NA other downstream 2911590 32989245 ~ 32990061 (-)
LOC110529880 LOC106571768 other upstream 1448395 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 1582526 37474229 ~ 37626960 (-)
G704702 NA other upstream 2131024 38037725 ~ 38038346 (-)
G704874 NA other upstream 2406788 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 3312943 39219644 ~ 39226313 (-)

Expression


Co-expression Network