LOC110529875 (LOC106571742)


Basic Information

Item Value
gene id LOC110529875
gene name LOC106571742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36619101 ~ 36626061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612513.2
CCTACTTCTCAGACAAGAAGCATACCGCAGAAGAACCCACACAACCGTTCCAATCCGCACAGAGGGAGAACGGGAGCTGGGGGAGCTGGCTTGGCAGTGCTGTCTTTAGAGTTTTTGCTTCAAGTTATCAGCTCTTTTTTTTATGTCATTTCTACGGGGAGATAATCTAATCCTTCCATGATGAAACTTGTGCTTGTTTTTGCTTTGGTTGCGTCTTTCTTCGCAGGTGCCCAACATGCTGCTCTTCTAGAGAAGAAAAGTGATGAGGTGCTGACCCATAAAGAGGAGGTCAAAGGTCATGAACCTGAGCTTGAGGTTCCAGGGGCTGATGTGAAGGACATCGAGGCCCGCCTGAAGtctgtggaggagaagagagagacaccgGAGGACGAAGAGCGCAGCCAGGAGTCATGGGACCTCAACgatgagaaggagaagaggatttGGAAACCAACGCACAGGTATCATCATAAAGAGGTGTCtgaggaaaagagagaagagcCAGATGAAGAACGTAGTCAGGAATCCTGGAGCCTGGGTGATGAGAAGGAAAAGAGATATAGGCCTACCTATCGGTACACCCCAAAGACACACCACAAACGAGACGAAGACGgtttagaggaggagagagaagatccAAAAGAGGAACGCAGCCAAGAGTCCTGGAGCctgggagaagagaaggagaagagatatAGGCCTACCTATCGGTACACCCCAAAGAAATTACACAAACGAGATGACAAAAGTGAAAAGTGCAGTCAGGAGTCCTGGGATCTGAAAGAtgagaaggaaaagagagaggaggaagaggaaagagagaaaagaatGTGGAAACCCCCACACAGATATCACCACAAGAAACACCACAAACAAGGTGCTGACTCATCAGAGGAGGAATCAGAGGAAAAGAGATCAGATGAGTCCgaagaagaggaggatagagagaagaaaaTCTGGAAACCAACAAACAGGTACCATCACAACAAGCGTCACCAACGCAGTGGGGATTCCTcaggggaggaagaagaggaacgAAGGAGTGATTCTGACGAACAAGAGGAGAAGAGGTACGGAGATgccgaggaagagagagagagGTACCTGGCGGAGAAGAGGAGTGAGGTGGAGAGTCGTCTCCTGGGGGAGATATATGAGAAACGTTCTCCCTGGGCGTACAGAGGATACTACCACCCCGCCTGGTGGAAGAGAGGCATAGAGCCACTCACACCATCACACAAGATGGAGGAACTGGCAAAGCTGCTGAAGAGGCACCAACTGGCCAGCCAATCAGAGCCAGCGGAAGAGAGGCAGAAGAGCATACCTCTAACCCCAGAGGAGgagaAGGAGCTGCAAAACCTAGCAGCTATGGACGTGGAGCTACAGAAAATTGCTGAGAAGATGCATGAAAACAGGAGCAAATAGATAGTGGACTGACCGACAGGGATGCTAAACTACGAGCTCAGTGTGCTAACCTTGTTTAAGAAAACATTAAAGAGATGAAGAGGTGGGagaacaaaaaaacaaatctAAGAGACTTGCCACACAacgtaaataaaggttaaataaaaaaattcaggTACAAAAGAATCAGCATGGAGACCGTTTAGTTTCTATTAGATAATATCAAAGATAAAACAGATGCTTTGCTTATTTGTCACAGATTTCTCTATATATATTTAAAGTGTGCATTGCCGTTTTcttcaaacttttgaatggttgtTTGTTTCTTCAGTCTGCATTTAATAAAATATATTATCCCGGGA
>XM_021612511.2
CCAAACAAATGTGTacaaaagacggttgacatcttgCTGTAGGCTATTGTCTCATGTGATATTCATTTGGATGGACACAGAACACATCCTGATTAGGATCTGATCTAATAATGACGCAGGTGTCGTCTACATCCCTCCTACGCCTCTTCCAGTTCAGACCTGATATATGGTGTGCCTCCCCCTACTTCTCAGACAAGAAGCATACCGCAGAAGAACCCACACAACCGTTCCAATCCGCACAGAGGGAGAACGGGAGCTGGGGGAGCTGGCTTGGCAGTGCTGTCTTTAGAGTTTTTGCTTCAAGTTATCAGCTCTTTTTTTTATGTCATTTCTACGGGGAGATAATCTAATCCTTCCATGATGAAACTTGTGCTTGTTTTTGCTTTGGTTGCGTCTTTCTTCGCAGAAAATCTATTACTTCCCGTTGGAAAAGAACGACAGAGAGAAGATGTGGTAACACGGTGCTTGGTTGAGGTCCTGTCCAAGGCACTGACCAAACCTGACTCTCACCCTCTGGATCAGGAATGCAAAGACATTCTCAAAGCAGGTGCCCAACATGCTGCTCTTCTAGAGAAGAAAAGTGATGAGGTGCTGACCCATAAAGAGGAGGTCAAAGGTCATGAACCTGAGCTTGAGGTTCCAGGGGCTGATGTGAAGGACATCGAGGCCCGCCTGAAGtctgtggaggagaagagagagacaccgGAGGACGAAGAGCGCAGCCAGGAGTCATGGGACCTCAACgatgagaaggagaagaggatttGGAAACCAACGCACAGGTATCATCATAAAGAGGTGTCtgaggaaaagagagaagagcCAGATGAAGAACGTAGTCAGGAATCCTGGAGCCTGGGTGATGAGAAGGAAAAGAGATATAGGCCTACCTATCGGTACACCCCAAAGACACACCACAAACGAGACGAAGACGgtttagaggaggagagagaagatccAAAAGAGGAACGCAGCCAAGAGTCCTGGAGCctgggagaagagaaggagaagagatatAGGCCTACCTATCGGTACACCCCAAAGAAATTACACAAACGAGATGACAAAAGTGAAAAGTGCAGTCAGGAGTCCTGGGATCTGAAAGAtgagaaggaaaagagagaggaggaagaggaaagagagaaaagaatGTGGAAACCCCCACACAGATATCACCACAAGAAACACCACAAACAAGGTGCTGACTCATCAGAGGAGGAATCAGAGGAAAAGAGATCAGATGAGTCCgaagaagaggaggatagagagaagaaaaTCTGGAAACCAACAAACAGGTACCATCACAACAAGCGTCACCAACGCAGTGGGGATTCCTcaggggaggaagaagaggaacgAAGGAGTGATTCTGACGAACAAGAGGAGAAGAGGTACGGAGATgccgaggaagagagagagagGTACCTGGCGGAGAAGAGGAGTGAGGTGGAGAGTCGTCTCCTGGGGGAGATATATGAGAAACGTTCTCCCTGGGCGTACAGAGGATACTACCACCCCGCCTGGTGGAAGAGAGGCATAGAGCCACTCACACCATCACACAAGATGGAGGAACTGGCAAAGCTGCTGAAGAGGCACCAACTGGCCAGCCAATCAGAGCCAGCGGAAGAGAGGCAGAAGAGCATACCTCTAACCCCAGAGGAGgagaAGGAGCTGCAAAACCTAGCAGCTATGGACGTGGAGCTACAGAAAATTGCTGAGAAGATGCATGAAAACAGGAGCAAATAGATAGTGGACTGACCGACAGGGATGCTAAACTACGAGCTCAGTGTGCTAACCTTGTTTAAGAAAACATTAAAGAGATGAAGAGGTGGGagaacaaaaaaacaaatctAAGAGACTTGCCACACAacgtaaataaaggttaaataaaaaaattcaggTACAAAAGAATCAGCATGGAGACCGTTTAGTTTCTATTAGATAATATCAAAGATAAAACAGATGCTTTGCTTATTTGTCACAGATTTCTCTATATATATTTAAAGTGTGCATTGCCGTTTTcttcaaacttttgaatggttgtTTGTTTCTTCAGTCTGCATTTAATAAAATATATTATCCCGGGA
>XM_021612512.2
CCAAACAAATGTGTacaaaagacggttgacatcttgCTGTAGGCTATTGTCTCATGTGATATTCATTTGGATGGACACAGAACACATCCTGATTAGGATCTGATCTAATAATGACGCAGGTGTCGTCTACATCCCTCCTACGCCTCTTCCAGTTCAGACCTGATATATGGTGTGCCTCCCCCTACTTCTCAGACAAGAAGCATACCGCAGAAGAACCCACACAACCGTTCCAATCCGCACAGAGGGAGAACGGGAGCTGGGGGAGCTGGCTTGGCAGTGCTGTCTTTAGAGTTTTTGCTTCAAGTTATCAGCTCTTTTTTTTATGTCATTTCTACGGGGAGATAATCTAATCCTTCCATGATGAAACTTGTGCTTGTTTTTGCTTTGGTTGCGTCTTTCTTCGCAGAAAATCTATTACTTCCCGTTGGAAAAGAACGACAGAGAGAAGATGTGGTAACACGGTGCTTGGTTGAGGTCCTGTCCAAGGCACTGACCAAACCTGACTCTCACCCTCTGGATCAGGAATGCAAAGACATTCTCAAAGCAGGTGCCCAACATGCTGCTCTTCTAGAGAAGAAAAGTGATGAGGTGCTGACCCATAAAGAGGAGGTCAAAGGTCATGAACCTGAGCTTGAGGTTCCAGGGGCTGATGTGAAGGACATCGAGGCCCGCCTGAAGtctgtggaggagaagagagagacaccgGAGGACGAAGAGCGCAGCCAGGAGTCATGGGACCTCAACgatgagaaggagaagaggatttGGAAACCAACGCACAGGTATCATCATAAAGAGGTGTCtgaggaaaagagagaagagcCAGATGAAGAACGTAGTCAGGAATCCTGGAGCCTGGGTGATGAGAAGGAAAAGAGATATAGGCCTACCTATCGGTACACCCCAAAGACACACCACAAACGAGACGAAGACGgtttagaggaggagagagaagatccAAAAGAGGAACGCAGCCAAGAGTCCTGGAGCctgggagaagagaaggagaagagatatAGGCCTACCTATCGGTACACCCCAAAGAAATTACACAAACGAGATGACAAAAGTGAAAAGTGCAGTCAGGAGTCCTGGGATCTGAAAGAtgagaaggaaaagagagaggaggaagaggaaagagagaaaagaatGTGGAAACCCCCACACAGATATCACCACAAGAAACACCACAAACAAGGTGCTGACTCATCAGAGGAGGAATCAGAGGAAAAGAGATCAGATGAGTCCgaagaagaggaggatagagagaagaaaaTCTGGAAACCAACAAACAGGTACCATCACAACAAGCGTCACCAACGCAGTGGGGATTCCTcaggggaggaagaagaggaacgAAGGAGTGATTCTGACGAACAAGAGGAGAAGAGGTACCTGGCGGAGAAGAGGAGTGAGGTGGAGAGTCGTCTCCTGGGGGAGATATATGAGAAACGTTCTCCCTGGGCGTACAGAGGATACTACCACCCCGCCTGGTGGAAGAGAGGCATAGAGCCACTCACACCATCACACAAGATGGAGGAACTGGCAAAGCTGCTGAAGAGGCACCAACTGGCCAGCCAATCAGAGCCAGCGGAAGAGAGGCAGAAGAGCATACCTCTAACCCCAGAGGAGgagaAGGAGCTGCAAAACCTAGCAGCTATGGACGTGGAGCTACAGAAAATTGCTGAGAAGATGCATGAAAACAGGAGCAAATAGATAGTGGACTGACCGACAGGGATGCTAAACTACGAGCTCAGTGTGCTAACCTTGTTTAAGAAAACATTAAAGAGATGAAGAGGTGGGagaacaaaaaaacaaatctAAGAGACTTGCCACACAacgtaaataaaggttaaataaaaaaattcaggTACAAAAGAATCAGCATGGAGACCGTTTAGTTTCTATTAGATAATATCAAAGATAAAACAGATGCTTTGCTTATTTGTCACAGATTTCTCTATATATATTTAAAGTGTGCATTGCCGTTTTcttcaaacttttgaatggttgtTTGTTTCTTCAGTCTGCATTTAATAAAATATATTATCCCGGGA

Function

NR:

description
cilia- and flagella-associated protein 251-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612513.2 False 1766 mRNA 0.46 5 36619101 36625881
XM_021612511.2 False 2087 mRNA 0.46 7 36619101 36626061
XM_021612512.2 True 2057 mRNA 0.46 7 36619101 36626061

Neighbor

gene id symbol gene type direction distance location
LOC110529872 LOC106571739 coding downstream 66969 36543815 ~ 36552132 (-)
LOC110529236 plcb1 coding downstream 128363 36216234 ~ 36490738 (-)
LOC110529235 plcb4 coding downstream 412621 36063537 ~ 36206480 (-)
LOC110529870 LOC106571558 coding downstream 559730 36052936 ~ 36059371 (-)
LOC110529868 LOC106571561 coding downstream 698195 35916240 ~ 35920906 (-)
trnaa-ugc-26 NA coding upstream 30504 36656565 ~ 36656638 (-)
gzf1 LOC106571746 coding upstream 48619 36674680 ~ 36682338 (-)
LOC110529879 LOC106571770 coding upstream 523262 37149323 ~ 37271260 (-)
LOC110529880 LOC106571768 coding upstream 729039 37355096 ~ 37361922 (-)
opn8a LOC106608050 coding upstream 799677 37425738 ~ 37456935 (-)
G703062 NA non-coding downstream 43117 36539491 ~ 36575984 (-)
G702295 NA non-coding downstream 133634 36483708 ~ 36485467 (-)
G702161 NA non-coding downstream 359277 36259368 ~ 36259824 (-)
G702149 NA non-coding downstream 385217 36229175 ~ 36233884 (-)
G702145 NA non-coding downstream 394312 36224432 ~ 36224789 (-)
G703117 NA non-coding upstream 11171 36637232 ~ 36699970 (-)
G703087 NA non-coding upstream 17259 36643320 ~ 36644736 (-)
G703147 NA non-coding upstream 84565 36710626 ~ 36710921 (-)
G703155 NA non-coding upstream 93035 36719096 ~ 36719296 (-)
G703179 LOC106571747 non-coding upstream 136144 36762205 ~ 36767971 (-)
G701618 LOC106571560 other downstream 700926 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 913788 35633473 ~ 35705333 (-)
G701454 NA other downstream 1029224 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 2595216 34017010 ~ 34029131 (-)
G699468 NA other downstream 2666745 33943022 ~ 33952356 (-)
LOC110530908 otof other upstream 863166 37474229 ~ 37626960 (-)
G704702 NA other upstream 1411664 38037725 ~ 38038346 (-)
G704874 NA other upstream 1687428 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 2593583 39219644 ~ 39226313 (-)

Expression


Co-expression Network