gzf1 (LOC106571746)


Basic Information

Item Value
gene id gzf1
gene name LOC106571746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36674680 ~ 36682338 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612520.2
gcaaTGCAATTGATATGCGTCTGAAGATGTTATTTTCTTCTTCTACATAATGACAAatacattgtttgtttttttgcatttgCAAAGGTACCGCGACACCATGAGCCGAATAGACTagtaatgatttatttcattttGATGTCGTTATTTCTAGAAACACGTTCGAATGATCCTAAGAACTGATCCAGAGTCGCTTTGTTCTGACGTTCCTTGTGAACATTTGAAACGGGTACTTAGAACCTATCCCAAATCATCCGAAGCGGACCGAATCTATCCAACATGGCCGAAGTGAAAACGGATCTCTCGATTTCGGGTGCAGATTTTACAGGAAATACTTTCGTTGTGCTGCATTTGTGAAGGGCTGCCATTTTACCGAGCTTACGCATCAACAGTATGAACCATGAGTGACCAAGTGGTCCAACTCTCCTCAGCCTTCCACCATGAGGACATGCTTCAGTCTCTGCACCAGCTCAGGCTACATGGTCACCTGTGCGATGTCACAGTCCAGGTCGACTTCCAGGGTGAGCTGGAAGAGTTTGAGGCTCACCAGGCGGTCCTAGCTGCCTCCAGCGGCTACTTCAAGAACATCCTACTGGCACCGGACCCACCCAAGAAACTATTCTTGGGGAACGTTCGAACCACTGATTTCACCAGGTTCTTGGAATATGTATACACTGGCAAACTGGAGGTGGATAAAGAGTTTGCTAAAGACACGATTGGTGTAATACATGAAGTGGCAACACTGTTGGAGTGTAAGAGCCTTGTCCAGGCCTGCAGCTCGGTTCTCTATGAAGGCAGCTTGAGTCTGCACAGGGTTGAGGCATCCATGTCACAAGACACGGAATATGATTTGTATGAtgtaggagaggaggatggggcgCTGGGGGTCGGAGTCAACAAAGTTCCCAAAATAGCCTCCACCAAGAGGCTGACCCCTCCTACCAAaccagagaggggggagaaaagggCAAAGGTCGCGGTCACAGCCGAGGAGGAGAAGTCAGAGGTGAATAAAGACACTGAGGTCTCTGGGAGGAGGAGTAACAGGCTGGCAGGGCGCAGAGTCTTCATTGACATTCCTAAGAAGAAGTACGTGAGGAAGATGAAGGACCAGACCCTGGCGCAGATGGAAGATCTGCCTGACAACAACACTCAGACAACCAGTCAGGAGGAGAACACTTACAACACACAGGAGGCAGAAGAGGCCCTTCCAGAGCCTCTGCCTGAAAAAGGGGGGGCGGGACTGGAGTCGACAGACGTTGATGATGAAGATGAGGTGGAAGAGGGAGATATACCAGAGGATTGTCCAGATGACTCCCTCTTCTTGCCCAGCaaggaagaggagggtgaggaggagggagaggagcgtGCCACCAACAGATCATCCAGACGTATTGACACTCAATACAAGTGTGACAAATGTCAACGGACCTTCCACTATGAGAAGAGCTACCTGAAGCACGTCAAGACGAGCCACAGTGTGCAGGGGGAGGTGACGTACCGTTGTGACACCTGCCAGCAGACCTTCGCCAACCGCTGCAACCTGAAGATCCACCAGAGACACGTCCACAGTGACGAAAGGCTGTTCCCCTGTGACGTCTGCACCAAGACCTTCAAACGCAAGAAGGACGTGACGCGCCACCGACGACAGGTGCACGAGGGAGGCGGCGAGCGACACACCTGTCTTGTGTGTAACAAGGCGCTGAGCTCTAAGACAGCGTTGACGCTACACGAGAGAACGCACACAGGAGACAAGCCCTACTCCTGCACTGACTGTGAAGCCAAGTTCTCCCAGAGCTCAGCCCTCAAGACACACCGCaggactcacacaggagagaagcctttcgcCTGTGACCAGTGTGATGCGAGGTTCACCCAGAACCACATGTTGTCCTATCACAAAAGGGCCCACACGGGAGAGAAGCCTTTTATGTGTGAGAGCTGTGGGAAAAGCTTTGCCTCTAAAGAATACCTGAAACACCACTCCAGAATCCACACAGGCTCCAGGCCTTACAAGTGTGAACAATGTGGTCGGGCCTTCGCCCAGAGAAACTCCCTCCACCAGCATATGAAGATACACACAGGTGAGCGTCCGTACCACTGTACAGATTGTGATAAGCAGTTCACCCAGCTGAATGCCCTCCAGAGGCACCAGAGGattcatacaggggagaagccctACATGTGTGGCCTCTGCAACCGTACCTTCACGGACAAGTCCACCGTACGCAGGCACACCATGACTCACGACCAAAACACTCCATGGAAGAACTACCTGGTGGTCCTCAAGGACAACATGGAGAAAAAGACTAAGAAGCCCAGAAGCCTTGGTAGAAAGGTTAAAATAGAGACTGTGGTTCGGGAGCTGGAAGGGGATAGTGGAGCTGGAGGTAGGCTCCAGGAGGGGACCATATTGGTTCCTGGTGAGCCCATcaccctctcagccagctggggCGACCCAGGGACCATCGCCCTGGTTAGCCACACCACCCTGGGTGGGTTCACGGTCATCCAGACAGAGATGCCGGCTGGGACCCAGCTACCCATCGTCACCACAGACTGCACCGGGGCCAGTGTCATCTCTCTGGATGGAtccactgtctctgtcccctttaCTATCCCTGTCTCTATGTCCTCCATCTCTGTGTCCTCGTCCTCCTCTGGCGTCCTCCCTGTCCagactgtgtctgtctctgtcccagtcaCTGTTTCAGGGGCCATATTTGCCCCAGTTTCAGAGACCAGTCTTTCAACTTCATGTGTTCTGGAAACTGCGGTGTCGCAGACCATCTTGGCTCCAGATTTGGAAGCTGGGCCGTGTTCAGATACGACGGCCATTGCGGATCCCGAGGAGGCAGTTTCAGAGTGTGCCCCTATCTCTGAGGAGTGTGTCACAGTGCAGACATCAgaactggagactgagacaccGAGCGCTGCTGTCTCTAATGAGGAACAACACAGTGTACCAGAGGACATTGGGACTGTGGAAGACCTGGAGGTGTCCACTGAAGATACTGTGGTGTAGGTTGGCATGTATTTCAATGTACACTCCCTTCCGTATGCATTTGGGCACTGAAGATAATTCctttaatttggctctatactccagcattttggattttgaGGTCAAATGTTTCATACGAGGCGACAACAGGACACTACCTTTTTTTCCGTGTACAAATTGAAAGCACTGTatcgaaatcaaatcaaatgtattcgtCACGTACACAGTTTACAGCTGGTATacaaggtgcagtgaaatgtttgCCCTAGCTCCCTCAATGCAGTACATCAATCAACAATAACAGTGAAGAGTCAAGTAGAAAATAACAAGTAGTAGAAGAGGCAATATGAgtagtaataatggactgtattTACACTATTAACAAATATAAAGTGGGTTGTGGAATCAATAGTACTAGAACAGCAGCATTGAGTGTGTGAGCtcagtgcttgtgtgtgtgtgtttataggtgtgtgtgtgtttatgtgtgtttgtgtggaaggGTTGAATATGTGTGTAGTGCAAATCATTTCTAAGGTGCCTAATGCAAATAGTCTCTACGGTGCAGATCTGTGCTAGGTTTGAAtttttagcagtctgatggcccggtggtagaagctgtctctgagcctgttcgTCCGAGACCCAATACTCGGATACTACTTGCCAGATGGTAACAGTGAACAGTCCATGACTCGGGTGACTGGAGTCCTTAAAGATCTTTGGGGCCTTCCTAAGACACGGGCTGGTGTAGATGTACTGGAGGGCAAGGAGCTCGCCCTCAGTTATTCATTAGGTCGTCCGCACCAACCTCGGTAGGGCCTTCCAGTTGAGGGCGGTGcgtttgccgtaccaggcggcgatGCAGCCGTTCAAGAGGCTCTCGATTGTTCAACTTCTTTAGGATCCTAGGGCCCGTGCTGAATGTCTTCAGGCGCCTGAGGTTTGAGAGACACTGCTGCTAAAACCACGGCGGGGGTGTGATTGGATCATGTCCGGTTCTCTGTAATGTgcacgctgaggaacttgaagctttttacCCTTCTCCACTGCAGCCCGGCCGATGACAATAGTGGCGTGCTCCTCTCctcgtttcctgtagtccataatcagctgcttggtttttgctgactttgagggagaggctgtttcCCTGGCACCACTGACTCTAGTCCCTCCCATTTGAagaagtcataagtatttggacacattcacttatagtgtattaaagttgtcaaaagtgtagtatttggttCCATATTTGTATGACTATGTTAAGTTTGTGACTACAAACTAGTGCACAGGTGTCaattggatgcatttgcagtttgttttgggttATGTTTTGACCAATGAACTGTATGGTGAATcatgtattgtcattttggagtgacttttattgtaaataaggaCGTTTTTGAACAtttctacatgaatgtggatgctaccatgattatggatcaTTCataaatgaattgtgaataatgatgggTGAGGAAGTTAGAGGCACAAAGatcatcccccccaaaaaatgctgaACTCCCATGTTAATGGTCAGGTTAGCACGTTCTGTAACCTTCTCACTAGTCATTATTCATTCCTGATTTTTCTTAATCATGGCATTATCCGGATTCATTTTGAAGTGTTCTGAAACATCTTATCTACTCAGAAATACAATTACTCCATTCACCATTCAGTTCCTATCAGGCAAAACTTAACACAGAGTattaaaataccctcaaataaaaagtgacattctgtactgttgtCCCATATGAGACATTTGCTCTCATCCAAAAATGCTGGAGGATAGAGCCAAATTAAAATGTGTAGCTTCACTGTCCATATACATATGAAAGTGTCTATTTATTGGGTCTGAATTCATATTTTATGTCTGTCCTCTACTCTGTTGACGAAACGTTACGGGGTTGCCTTTTTGAAATTTAGGCTGGGATTGAATCGGATTGTGGGTTCTAGGTATTGTGGATTTTAACCTCTCAAATATTGAGCAGTTCTGAACAGGTTCCAACTGATATTTTGGTGTACAAAGCCATATGTGAACGTCGTAGGGTTCAGTGCCTCGAAAGCTTTATCTGTCTGCACTCAGCTACCACTCTCAGAACGGACCTGGAAGTGTCAGGTTTCAGACCGCATAGGAAGTAACGTGTCACACTTTCTGGCCTATCCAGACAAATAATCGATTTACTCTCCCTCTGGGAGACAGAATATGAAAGGGGACAGTCTAGtgcacaggtgtcaaactcattccacagagggccgagtGGCTGTGGgttttgctcctcccttgtacttgattgatgaattaagggccctaattagtaaaaaaaaaaaaaaaaaaacctgctgaCGCTAGgcccatggaatgagtttgacaaccCTGGTCGAGCGcaagggtattcaactcttaaAGGCTCTGATTGGTCCATCTGATGTCTGCAGTGGACGTACAGCGTTTACTGCGACGCGGCCTCCGCAGAGGTCAGAACGTTCACACTTCTTCACggagcagagctgttgtcaaggaagtgggtttgtgtttatacaggacctcacCTACCATCAACTACCATCAACTATTCATGTCGATGCGGATCTATACAGAGCTATAAGGAGACCTTCACATTGTTACATAATTTGGGAGGCACACGGCGATGCGGTATGGAGTTCGATTTGCTCTCCGAAAGCCTCCGGAGGCGCCGCATTTGCGTCACATCCTCCGTACTGAGCCTCCGGTCCACATTTCGgaagcctgctggttttctgttctacctgataatgaattgcatACACCTGGTGTcctaggtctaaatcagtccccgattagaggGGGAATGATGAAAGACAACAGTGGAACTGGCTTGAGGTCCAGGATTGAGTCTGAGGGGTCTAGCGAGTCTAAATctaatagctaaatgatccttgctATTACCATTTTAAAATAATTATATGTTAGCTTGGTAAGTTGTTTATTTGATTGTTCCTATATTTAGAAAAAACATGTCATTTTAAGCCCcacttttgttgaataggaaaatAAATCAATGTATTTTCATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K22402 GZF1; GDNF-inducible zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612520.2 True 6079 mRNA 0.48 8 36674680 36682338

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-26 NA coding downstream 18042 36656565 ~ 36656638 (-)
LOC110529875 LOC106571742 coding downstream 48619 36619101 ~ 36626061 (-)
LOC110529872 LOC106571739 coding downstream 122548 36543815 ~ 36552132 (-)
LOC110529236 plcb1 coding downstream 183942 36216234 ~ 36490738 (-)
LOC110529235 plcb4 coding downstream 468200 36063537 ~ 36206480 (-)
LOC110529879 LOC106571770 coding upstream 466985 37149323 ~ 37271260 (-)
LOC110529880 LOC106571768 coding upstream 672762 37355096 ~ 37361922 (-)
opn8a LOC106608050 coding upstream 743400 37425738 ~ 37456935 (-)
LOC110530908 otof coding upstream 791891 37474229 ~ 37626960 (-)
sod2 sod2 coding upstream 1099836 37782174 ~ 37792728 (-)
G703087 NA non-coding downstream 29944 36643320 ~ 36644736 (-)
G703062 NA non-coding downstream 98696 36539491 ~ 36575984 (-)
G702295 NA non-coding downstream 189213 36483708 ~ 36485467 (-)
G702161 NA non-coding downstream 414856 36259368 ~ 36259824 (-)
G702149 NA non-coding downstream 440796 36229175 ~ 36233884 (-)
G703147 NA non-coding upstream 28288 36710626 ~ 36710921 (-)
G703155 NA non-coding upstream 36758 36719096 ~ 36719296 (-)
G703179 LOC106571747 non-coding upstream 79867 36762205 ~ 36767971 (-)
G703198 NA non-coding upstream 96506 36778844 ~ 36779547 (-)
G703301 NA non-coding upstream 249698 36932036 ~ 36932240 (-)
G701618 LOC106571560 other downstream 756505 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 969367 35633473 ~ 35705333 (-)
G701454 NA other downstream 1084803 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 2650795 34017010 ~ 34029131 (-)
G699468 NA other downstream 2722324 33943022 ~ 33952356 (-)
G704702 NA other upstream 1355387 38037725 ~ 38038346 (-)
G704874 NA other upstream 1631151 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 2537306 39219644 ~ 39226313 (-)

Expression


Co-expression Network