LOC110529880 (LOC106571768)


Basic Information

Item Value
gene id LOC110529880
gene name LOC106571768
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37355096 ~ 37361922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612526.2
ATGACGTCATCGGGTCTAACAATCGTCTCGCCTCGAATTGTGCATGTGCTGGctgtcaaatcaaaggcactccttaGATATAACGTTGTTTTGAcgaaaacgtgtcagtttgtcgctttcacgaggttggagtaataacatgtgcCGTTAGACATCGAGAAAATTAACAACATGAAGAAtctttcacttctctcattgacttctgaAACCCAAAACCCCGGAATGGTCTGTTTGGTATCTTTCCCAAACGTTCCCAGAAGTCTCGCGATGTTgcacctctgggtttagaaactctgtgccGTCATGCTTTTTGTATTGCCTCGCTATTCAATTCCGGTTCATGATAGCAACTTTCACCCCGGGAAAAGTGAAATAAACGTGGCAAATGTAATAAAAGGATTATGGTTTGACAAGAAAACCGAGGCATGTAATGGCAAGTTTGTGTATAGAATTTCGTGACAGAAGAATTTATTCGCGATTAAATCAAGCTATCTAGTTCCTTCAGCTTGTCCCTGCTGGCTTTAGTTGCTAGCTTGGTTATTGAGTTGCATGGGCTTGCTGGACAATCAAAAACTTTGACAGCTTACGTTAGCAACATAGGTAGCTAATTATTTTCATTTGTTGAGTAGCTAGGTATTGTAGTTGACGGCAGCAAATATTTGTTGTAATAGTTAGCTGTACCTTCATAGTTTAATTGCATTTGATGTGAAcatagctagctatgacaatgtCATTTTAGACAGCACAAAGTAATAACAACTTGAATAACTGTAGTTAAGCGGGATTGCTTGATTGTCTCTCATTGCCAAACGCTTGACATTACCTAAGGTCACAGCTGCCTACCGAATGTGATCAAATCTACTTCTAGTGTAGTGACTCCTTGAATCAGTTGAGTTAGTTGACattgctagatagctaattaacACAGTTTGAACTCACAAGATACAACACTGATATCATTATTTGTCTTTAAGACAGGTGGCTAAAATATCCTAGCAGATATGCATGGCTAAGGTCATTCAGACTAATCAGCTCAGCCCTGGCCCTGAGGTGTTACCTCACTCAGGCAGAGGGGATTACGGATTTTGCAGCACCAGGGATGCATGACAGGAGAGACTTGTCCTATTCTTAGTGTAGGATGGCCGTTAAAGTAGCTGGAACTAGTATTATGCACGTCAACATCCATCTCACGACCGATATCTTCTGCTCTCATCAATGCTTTTGAATGATCGATTTTCTCCAATGTCACTGATCAGTGAGTGatctttttttttatctctcGCCGTTTTGGATTAATCCATACCCTGCCTGGCTGTCAGTATGGAACTGGGCAAAGCCAAGTTGCTGAGGACCGGTCTGAACACGCTACACCAAGCCATCCACCCAGTTCACGGGATCGCATGGACGGATGGGAAACAGGTCTGCCTCACCTCCCTTTACTATGCCAACGGTGACGTGAAATTCGGCGACACCAATGTCATTGGTCAGTTTGAGCATGTCTTCGGTCTCTACTGGGGCCCTCTATGCTGCTCCGGCTCTCCTGCTCTGTTGGCCGTCCAACACAAGAAGCATGTCACAGTGTGGCAGCTGCAGCTCAGCGCTCTGGAACAGAACAAGCTGCTGTGCACTCAGACCTGTGAGATGAGCGAACCGTTCCCCCTTCTGTCTGAGGGATGTGTCTGGCATCCCAAGATGGACATCCTTTCTGTCCTTACCAAGAAAGATGCCTCTGTGCTGTTCTGTGTCCGTGTGGACAACCGCAGGGTGAAGGCTGATATTAAAGGCAGTGGACTCATCCACTGTGCCTGCTGGACCAAAGATGGCACCCGGTTGGTTGTGGCCGTTGGAAGCGCCCTTTACTCCTACATCTATAATGATGTTCAGAAGAGTCTTTTAGCCTGCTCTTTCTGCCCTATCTTCGACGTGGGTGGGTACATCTGTGCCATCGAGTCGACAGGCGATGCCCAGGTGGCAGTGGCTACAGAGCTGCCTCTGGATAGGATCTGCGGGCTGAATGCAGGTATAGTCTTCGACGTGCCCTCAGATTCCGAGTCCTCCCTACCAGGACATTCTTCTCTTATGGTGATGTTGGATGAGGATGGCTGTATAGACCCCCGCAGGAGGTCCTTTGACTCGGAGAGGTCCTACCTGTCCTGCTCTCCGTCTGGCGGCCCTATGGACCTCACCCACCTCCTGGCCAAGCACCGGCGCTCCGACCCCAGTCCACTCATAAACTTGCGCCGCAAGGACCACCTGACCGGCTCCGGACAGGATTCATCTCACCTTATCCTTGTCACCTACGAACGGAAAGTCACCAGCACCAGTAAGGTCAGCATCCCTGGGATCCTGGTGCCAGACATCTTGGCCTTTGACTCCAGAGGCTCCATGGTGGCGGTGGCCTCCAACACGTGTAGCATGGTGCTGGTCTACTGCATCACGCCCTTCGCTATGCCCAATGTCCAGCAGATCTCCTTACAGAAGAACGAGAGGCCCAAAGGCGTCTGCTTCCTCAGTGACAAGACGTTGCTTCTCATGATCGGCAGACAGAAGTCCAACGAACctgccttcctcccctcctccaacACAGAAAAATACATCCTGCACCTCTCCTCCAAGGAGATAGTCTACGATGGAGAAACCCCGGCGTCTCCCTCCCCGAACCGGCAATCCCCCGCTAATTTCTACCCGGGGATTAGGCGCCACTCGGAGCATGTCTTCTCTaaggaggagcagcaggagcGTGTGGCGATCAAGGAGTTGGTGCTGCCGGGAGGAGGTGTAATCCAGTCCCGTTCTCCagggagcagcaggaggaggctggtggaggaggtgaggagcCCGGAGCCCAGCTCAGTCGACTTTCCCTACTCTGACCTCTGCCGCCCCTCTGATCAATCCCTCTCGAGCGCCTCCTCCATTACGGTCGAGAACTTCGACATGGAACCCATCAACCGGATGAGAGGGTCAGTGCAATCTGGGGACTTGAGTCGACCCTGCTCCCCATACTACAACCCTGGGGATAAGCCCCACACGGAGCTCCCCACCCTGCCCAAGACCACCCCCCTGGCccccagagagaaggagaggaaccTGGAGCAGCTGTCCCAGAACATGGAGAGGATTTTCTCTCGCTTCTCTGAGGTGCAACAGTATCTCACAGAGATCAGGGACTTCACTCAGAACGGGAAAAGGGGTTTGGGGACTATTTACCCCAATGCCTGTGAACCTCCATACGTTAACATCACATGTCAGAAGCAGCTGTCtgaaaatgtgtttatagatgagAGAAGACCAGTGTTGCTGTGTGAGGGGAAGCTGTGTCTGAAGGTTCTTCAGGAGCTCTTTAACCTCACTATAGTAGAGATTATGTATGGTCCGTTGTGGATAGTCCTAGTGGCGGATGCAGAGGGCTTTGTACCCCTGACTTTTAAACCCAAAGAGGAGTTGACCGTGAGGAACGGCAGGAGGAAATCTCCCATCAGAAGCCCTGGCAGCCCAGACACATGCCCCTCCAGCCCTGTGAAATCTCCCTCAAGCCCAGCTAAATCACAGACTTGAACAAGGCCTAGCCCCAAAACAGAGACCTCAGCATAGTGGGAGAGAGCACAGAGCATGGGACTAGCATAACACACAGGATATGTCAATGCTTTATGCATACATCTCTAACAACTGGACACACAGACCCCCTCTGCATCTTCTTATGAACAAGCAGTACTGGGTGGCAAATTCACCTTTTTCAGTTGGGGAATTATTTGAGACAAATGTTTGTCACACTTTGGAAAGTAGCACCTTTCAAACAATGTTTACATTTAGTGACGTTTGGATATTATATTGGTATTTTTTGTCTTTGTATTATATGTACATCTGGTTCAAGATGAagttgataaaaaaatatatcggACCAatgaagtactgtagtagtgtttTGGGTGGCCTAGGTCAGGAAAGTAGCCACCATATCCTGTTTATCCTGTTTGTGTGTTATGTGATTGTATAATATTAAAGCCCTCAAATGTTTCA
>TU800348
AATTCCGGTTCATGATAGCAACTTTCACCCCGGGAAAAGTGAAATAAACGTGGCAAATGTAATAAAAGGATTATGGTTTGACAAGAAAACCGAGAAGCAGCTGTCtgaaaatgtgtttatagatgagAGAAGACCAGTGTTGCTGTGTGAGGGGAAGCTGTGTCTGAAGGTTCTTCAGGAGCTCTTTAACCTCACTATAGTAGAGATTATGTATGGTCCGTTGTGGATAGTCCTAGTGGCGGATGCAGAGGGCTTTGTACCCCTGACTTTTAAACCCAAAGAGGAGTTGACCGTGAGGAACGGCAGGAGGAAATCTCCCATCAGAAGCCCTGGCAGCCCAGACACATGCCCCTCCAGCCCTGTGAAATCTCCCTCAAGCCCAGCTAAATCACAGACTTGAACAAGGCCTAGCCCCAAAACAGAGACCTCAGCATAGTGGGAGAGAGCACAGAGCATGGGACTAGCATAACACACAGGATATGTCAATGCTTTATGCATACATCTCTAACAACTGGACACACAGACCCCCTCTGCATCTTCTTATGAACAAGCAGTACTGGGTGGCAAATTCACCTTTTTCAGTTGGGGAATTATTTGAGACAAATGTTTGTCACACTTTGGAAAGTAGCACCTTTCAAACAATGTTTACATTTAGTGACGTTTGGATATTATATTGGTATTTTTTGTCTTTGTATTATATGTACATCTGGTTCAAGATGAagttgataaaaaaatatatcggACCAatgaagtactgtagtagtgtttTGGGTGGCCTAGGTCAGGAAAGTAGCCACCATATCCTGTTTATCCTGTTTGTGTGTTATGTGATTGTATAATATTAAAGCCCTCAAATGTTTCATCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612526.2 False 4020 mRNA 0.49 3 37355100 37361922
TU800348 True 866 TUCP 0.43 3 37355096 37361593

Neighbor

gene id symbol gene type direction distance location
LOC110529879 LOC106571770 coding downstream 83840 37149323 ~ 37271260 (-)
gzf1 LOC106571746 coding downstream 672762 36674680 ~ 36682338 (-)
trnaa-ugc-26 NA coding downstream 698462 36656565 ~ 36656638 (-)
LOC110529875 LOC106571742 coding downstream 729039 36619101 ~ 36626061 (-)
LOC110529872 LOC106571739 coding downstream 802968 36543815 ~ 36552132 (-)
opn8a LOC106608050 coding upstream 63816 37425738 ~ 37456935 (-)
LOC110530908 otof coding upstream 112307 37474229 ~ 37626960 (-)
sod2 sod2 coding upstream 420252 37782174 ~ 37792728 (-)
acbd3 LOC106571761 coding upstream 455950 37817872 ~ 37851844 (-)
LOC110530910 LOC106571760 coding upstream 497335 37859257 ~ 37879878 (-)
G703503 NA non-coding downstream 79884 37252873 ~ 37275216 (-)
G703509 NA non-coding downstream 93052 37261736 ~ 37262048 (-)
G703407 NA non-coding downstream 205992 37148302 ~ 37149108 (-)
G703387 NA non-coding downstream 295833 37058572 ~ 37059267 (-)
G703547 mut non-coding upstream 28453 37390375 ~ 37423284 (-)
G703617 NA non-coding upstream 51019 37412941 ~ 37413557 (-)
G703548 NA non-coding upstream 66185 37428107 ~ 37429823 (-)
G703627 NA non-coding upstream 80345 37442267 ~ 37442613 (-)
G703647 drc1 non-coding upstream 108969 37470891 ~ 37472743 (-)
G701618 LOC106571560 other downstream 1436925 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 1649787 35633473 ~ 35705333 (-)
G701454 NA other downstream 1765223 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 3331215 34017010 ~ 34029131 (-)
G699468 NA other downstream 3402744 33943022 ~ 33952356 (-)
G704702 NA other upstream 675803 38037725 ~ 38038346 (-)
G704874 NA other upstream 951567 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 1857722 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 2595039 39956961 ~ 40017167 (-)

Expression


Co-expression Network