opn8a (LOC106608050)


Basic Information

Item Value
gene id opn8a
gene name LOC106608050
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37425738 ~ 37456935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612533.2
atggaggaggacaaCAAATACATGTCCAAACTGTCACCCACTGTGGACTACTGGGCAGGCATGTACCTAGTGGTGATAGCGGTGCTCTCAGTGCTGGGTAATGCTGCAGTCCTGCTGACCTCAGCACTGCGGCCGACTCATCTCAAGGCCCCGGAGCTCCTGACAGTCAACCTGGCTGTGACGGACATCGGCATGGCTCTCAGCATGTACCCCCTATCCATTGCCTCGCTCTTCAACCACGCCTGGATTGGAGGGAATTCCTCCTGCCTCTACTATGGCCTGATGGGGATGATCTTCGGCACGGCCAGCATCATGACCCTGGCTGTCATGGGTTTGGTACGATACCTGGTGACAGGAAACCCACCTAAAACAGGTAACAAGTTCCAGCGTCGGACCATCACCATGGTGATCAGTGTGATCTGGCTGTACTCTGGGCTGTGGGCTGTGTTCCCTCTACTGGGATGGGGTGGCTACGGACCGGAGCCCTTCGGGGTGGCCTGTTCCGTGGACTGGGCCAGTTACCAAGACTCCCTGAACCGTTCCACCTTCATCATGTCTCTGTCTATCCTCTGCACCTTCATCCCCTGCCTCGTCATCCTCTTCTCCTATTTCGGCATAGCCTGGAAACTCCACAAGGCCTACCAGGCCATCCAAAGCAGCGACTTCCACTACGGACACATCGAGAGGAAGGTCACTCTGATGGCGGTGTTGATCAGCTCTGGGTTCATCGTAGCCTGGTCTCCCTACGTGGTGCTCAGCTTTTGGAGTATGTTCCACACCAAGGGGAAGGACAGCCTGGCCCCCGTGGTCTCCTTGCTGCCCTGCCTGTTCGCTAAAGGTTCCACGGCCTACAACCCTTTCATCTACTACATCTTCAGACGCTCCTTTAGACGCCAGCTCCAGGTCCTGATCTGCTGCTCTGCCCAACCAGACTCACCTTCGtgtagggagacaggagagggcaGGCAGAGTGTAAGGTCTGACCTACTACAGAGCTTTCCGGATGATAAGAATAGAGCTCCCTTGGTGGGGAAGTTGGGAACTGCGGAGCTGGAAAGAGTCTGAGAAAGAGCTGACAAGCTCCTGTTAAAAAAGTATTGGAACACGACCTGTTTGAACATTGGTCCGTACCCATCAAAGGgttaagactgtgtgtgtgagtgtgcgttaAAGGGTCAGAAATGGATGGGGTGCGAGTTAATCAACTGCGTTTCTTCACTGTCATTCTAGCACACACTACTAGGTCATAGCCTCGTCCTCGCCACGTGACCAACaaagtaacactttacttgaagtCAACAGACAAAATGTATTATGATGCAGTCATAAGACACATCACATATTATAATCATTGTAATAAGGTATTATAAGGGCTCATACATGTTTATAAAAAAGTTGTAAAGCATTGTGTTTTTTGGCTTGAAGTTAAAGGAATATCATGTAGAATGAAGCCCCTTAAAGGAAACTGGGTGAATTGCAACATTTGCACTGCTACAACACTAACAATTCCACTTACGatgtagaattttagcaaccaggaaatagcAAGTAAATTTCTTAGAGCAAGTCAAGTTATGAGtctcttttactttcagttttgcacaccaTTTCAGCCATTGTTCATTGTGCTTGTGAGGAGTTAACCATGCCTCTGAGTGATtctgatggaagagagggagggtccTGCCTtccaatttgacaacaagagacaGACCAGCTTTTGTTGTCAAATAGGAGGACTGCACCATCATCATGTAACTTTGTGTGGGCCCCAATTGATTCATTTTTGAACAAATATTGTGAAACATTACACTATTACCACAGATATATTAAGGACATTTTCTGAAATGAAAATGCAAAAATATGACATAATGCCCCTTTAAGTGTTATTGTAAAGTTCACTTTATTGTTGAATGTTGTTGTGAGGTACTGTAGCATTGAACTTAAACTTCACAATGGTCACTATGGCCATTCACAATGGTCGCTATGAGCATTTACAATGGTCTCTGTGGCCATAGTTCTGGTCCCTTTCTTCCTGTTTTGAGAGACTTGTTGGATATTGTAGCATTGGCAGGCTACGAGACAGCCTTCTTGACTATCCTCCCCATGTCTAGAGTGTTCTGTGAGTTTGTCCCCAATAGAAGCCTCAGGAACCATCAAGTTAAAAGAGGAGAGCTAATCTGacattgcaccctattccctacatagtccactacttttagATAGAGACCTATGTAGCTAATATTATTCTGATGTGGCAGTGGTTGTGAACCATGTTAggaatagggaatagtgtgccattttggaGGCGGCTGGAAACTTCAGGAAGCGTTTTTCACATCTGACCTTGTTTGTGTGACCTCTAATGATTGTAACAGAGCTACTCTGAGAAAATCAAACAGCTTtagaaaagcatatttttttcTCTGTCTTTGTTGCTCCTAAACacttctacttcacaataacagcacttacacttGACTGGgttagctctagcagggcagaaagctgacttgttggaaaggtggcatcctatgaaggtgccacgttgaaagtcactgagctcttcattaaggctattctactgccaatgtttgtctatttttCAAGAAAACCttgaaaaaaaattgaaaatcTTGAAAAATATGATCTTCTTTTCCTCTGCATGCCCTGAAACTCAACTCCTCTGACAATAGAATGTTTTTTGTTGAATGTTGTAACGGAGACCCTGACATTTTGACATTAATAGATCCTGTTTCTTCATCTAAATTCATCTTTGTTTGCATTAATATTGTGTGCAAAATTCTAAATATTGCATTGAGTTATTAAAACCCCCTAGAGTCAATATCCACACCTTTGCTGAAAttgaattagcataataaaaaaatccccatcaaaatgcatcagtttaagccagatgTCGCacttcttttttattttattacccctttttcatggtatccaattggtagttacag

Function

NR:

description
opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612533.2 True 2978 mRNA 0.45 4 37425738 37456935

Neighbor

gene id symbol gene type direction distance location
LOC110529880 LOC106571768 coding downstream 63816 37355096 ~ 37361922 (-)
LOC110529879 LOC106571770 coding downstream 154478 37149323 ~ 37271260 (-)
gzf1 LOC106571746 coding downstream 743400 36674680 ~ 36682338 (-)
trnaa-ugc-26 NA coding downstream 769100 36656565 ~ 36656638 (-)
LOC110529875 LOC106571742 coding downstream 799677 36619101 ~ 36626061 (-)
LOC110530908 otof coding upstream 17294 37474229 ~ 37626960 (-)
sod2 sod2 coding upstream 325239 37782174 ~ 37792728 (-)
acbd3 LOC106571761 coding upstream 360937 37817872 ~ 37851844 (-)
LOC110530910 LOC106571760 coding upstream 402322 37859257 ~ 37879878 (-)
LOC110530911 parp1 coding upstream 448235 37905170 ~ 37921411 (-)
G703547 mut non-coding downstream 2454 37390375 ~ 37423284 (-)
G703617 NA non-coding downstream 12181 37412941 ~ 37413557 (-)
G703503 NA non-coding downstream 150522 37252873 ~ 37275216 (-)
G703509 NA non-coding downstream 163690 37261736 ~ 37262048 (-)
G703647 drc1 non-coding upstream 13956 37470891 ~ 37472743 (-)
G703648 NA non-coding upstream 17817 37474752 ~ 37477292 (-)
G703653 NA non-coding upstream 42004 37498939 ~ 37506549 (-)
G703684 NA non-coding upstream 91992 37548927 ~ 37586929 (-)
G704025 NA non-coding upstream 293667 37750602 ~ 37750921 (-)
G701618 LOC106571560 other downstream 1507563 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 1720425 35633473 ~ 35705333 (-)
G701454 NA other downstream 1835861 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 3401853 34017010 ~ 34029131 (-)
G704702 NA other upstream 580790 38037725 ~ 38038346 (-)
G704874 NA other upstream 856554 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 1762709 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 2500026 39956961 ~ 40017167 (-)

Expression


Co-expression Network