sod2 (sod2)


Basic Information

Item Value
gene id sod2
gene name sod2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37782174 ~ 37792728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612540.2
TGTTGAATTTCAAGGGCAGTTCTACTTCTATTCTGAACGGTGTACAGTGGATACGGTGTGAAGAAACATGAGCATGCTAAGCAGAGTGGGTCAAGTCCGCAGGTGTGCTGCCACCGTGACCCCAGTCCTGGGCATGGTGGCAGCCAGATGGAAGCACTCGCTCCCTGACCTGACCTACGACTATGGAGCCCTGGAGCCTCACATCAACGCAGAGATCATGCAGCTCCACCACAGCAAGCACCACGCCACCTATGTTAACAACCTCAACGTCACAGAGGAGAAGTACCAGGAGGCACTGGCCAAAGGTGATGTGACAGCACAGGTTTCTCTCCAGCCTGCTCTGAGGTTTAATGGAGGAGGCCACATCAACCACACCATCTTCTGGACAAACCTCTCTCCAAATGGCGGTGGAGAACCACAGGGTGAGCTGGCAGCGGCCATCAACCGTGACTTTGGCTCCTTCCAGGCATTGAAGGACAAGATGTCTGCCGCCACTGTGGCGGTCCAGGGCTCAGGCTGGGGCTGGCTGGGCTTCGACAAGGAGAGCGGGAAGCTCCGTATCACAGCCTGCCCTAATCAAGACCCACTGCAGGGAACCACAGGTCTGGTCCCCCTGCTGGGTATTGATGTGTGGGAGCATGCCTACTATCTACAGTACAAGAATGTCCGACCCGACTATGTCAAAGCCATCTGGAATGTCATCAACTGGGAGAACGTGAGCGAGCGCCTCCAGGCCGCCAAAAAGTAGACCACTGGCTCTTCCTTCCTGCCCCAAACCTTACCCCCGCAGACCTTACTACCTTAAGAGAGCACAAAATACCCTCTTAACCCAAATGAAGATAGCTGCTGTATACTGTACCAGAGAGAATATTCAGTCTAAAGCTGTTTGTTTGTCcgactaggtttccatccaattggcgacagattttcatgcgagtATTATAAAATCGGCATTAGAACAATGTGCATTTTCCCAcaagatgtttccatcaaattgacttgttgcaaaTGCTGTGCGTGATGACATTGCACATAAAAATACCATATGTGGTTAAATTCCCAAGTACCAAATAAAAAAGCAAGTTAAATGTGTTTCTATTGCATTGAAATCTAATGATGgttctaaaaaaaaatgttgcgtTGTATACCGAGTGTGTCCAGTCTTGTAATGTCACGTGTCCTCTAGTGCACGTATAGCTTACATGATAAGAATATTATAAACAAAAGAGCGAGAATTTTTATGTCAAACGGCAGACAAGCATTAAGCTCATCACCATGCACTTTCACCTCCCTGTGAAGTcttaatttatttaatctgtagactaataaactgcatgctttcccgatgAGTTGCAGTGGGATAACCGCACATATCATTCTGTGACTCAGTTGACTTCAATTAGATTGTAATGTTATCAATATTTTCTCATAAAAGCATTTCCACTGATATTTCTCGCATAAGTAATTTAATTACGATTTTCTGTTTCTATCAGGCCTGTCATTACTTCATTTTTTTATCAGACCTgtactttactcacataaaaaggttggatggaaacctggttagtgttgCACAGATATCAGGTAAATGTGATTGAGGCAAATGTTTTTGACGTGATATAATAAAATATTTAGTTTGAATTGTA

Function

symbol description
sod2 Enables superoxide dismutase activity. Acts upstream of or within several processes, including neutrophil homeostasis; removal of superoxide radicals; and response to methylmercury. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; hematopoietic cell; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autoimmune disease (multiple); lipid storage disease (multiple); liver disease (multiple); and optic nerve disease (multiple). Orthologous to human SOD2 (superoxide dismutase 2).

NR:

description
superoxide dismutase [Mn], mitochondrial

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051597 response to methylmercury biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04564 SOD2; superoxide dismutase, Fe-Mn family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612540.2 True 1646 mRNA 0.45 5 37782174 37792728

Neighbor

gene id symbol gene type direction distance location
LOC110530908 otof coding downstream 155214 37474229 ~ 37626960 (-)
opn8a LOC106608050 coding downstream 325239 37425738 ~ 37456935 (-)
LOC110529880 LOC106571768 coding downstream 420252 37355096 ~ 37361922 (-)
LOC110529879 LOC106571770 coding downstream 510914 37149323 ~ 37271260 (-)
gzf1 LOC106571746 coding downstream 1099836 36674680 ~ 36682338 (-)
acbd3 LOC106571761 coding upstream 25144 37817872 ~ 37851844 (-)
LOC110530910 LOC106571760 coding upstream 66529 37859257 ~ 37879878 (-)
LOC110530911 parp1 coding upstream 112442 37905170 ~ 37921411 (-)
LOC110531088 NA coding upstream 137390 37930118 ~ 37931963 (-)
LOC110529892 LOC106571758 coding upstream 423117 38215845 ~ 38260820 (-)
G704045 NA non-coding downstream 2949 37779022 ~ 37779225 (-)
G704043 NA non-coding downstream 4020 37777744 ~ 37778154 (-)
G704042 NA non-coding downstream 4489 37777476 ~ 37777685 (-)
G704039 NA non-coding downstream 6913 37775056 ~ 37775261 (-)
G704037 LOC106584613 non-coding downstream 10652 37771275 ~ 37771522 (-)
G704057 NA non-coding upstream 8607 37801335 ~ 37801564 (-)
G704058 NA non-coding upstream 9320 37802048 ~ 37802363 (-)
G704061 NA non-coding upstream 11296 37804024 ~ 37804247 (-)
G704071 NA non-coding upstream 20339 37813067 ~ 37813605 (-)
G704072 NA non-coding upstream 21269 37813997 ~ 37814205 (-)
G701618 LOC106571560 other downstream 1863999 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 2076861 35633473 ~ 35705333 (-)
G701454 NA other downstream 2192297 35582998 ~ 35589877 (-)
G704702 NA other upstream 244997 38037725 ~ 38038346 (-)
G704874 NA other upstream 520761 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 1426916 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 2164233 39956961 ~ 40017167 (-)
G709272 NA other upstream 4927043 42719771 ~ 42720699 (-)

Expression


Co-expression Network