LOC110531091


Basic Information

Item Value
gene id LOC110531091
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39050749 ~ 39053399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474630.2
CAGCAAGGCTCGGGGAATGGACGTGACGCGACACTGGCTGGCTAGTCTGCTCTACACTCAGGGCGGCACAGCTGGTATCAGTGCCTACAATCAGCAAAGGCGATAGGACTCCTATCAACAGACAACTCCCTGGGAGGAGACAGACGCTATGATTAAACTAAAGGGCACCGGTAATGTCATTAACGCGGTGACACAGGGCTTTTAGGGGAGCACATTCACACTGAGAAACTGCAGTCAAAGGAGCCAAAATGGAGGATTGTTCggaggtaaaaaaaacaaaaaacatcagAAAGCGCAATGATCCCGACTGCACTGTTGAGGGATGACCGTGGCATAGGAGTGATGCCACCTGTCGGAAGACAATACATGAAGAGCTGTTTTAAAGAACCAAGTTGGAGACAGCGGCACACACAACAGGCAGATAAAGGagttggaggaggagaggagtgggtggAGAAATATGATGCTCACCGCATGCCTCTCTGGTCCTTCGCACCCTGTTTATCGCTGTCCCCGGCCGTCGATAATGATTATCAATATATGACAGTTCGGCATTCGACCGCCACCCCTCTGGGAAACGGGCCCGTCCTCCACAGGGTTCAAACGCACTGATCAACAAGAAGCAGCTGGACGATCGATGGACAGAGCACAGGGATTTACCACAGCGTGtctccactccactgtccatccATTGACCCCCTGGGTTGTTTGACCTTCTGTCCAGTTCTCTACAAGAACTAGTCACTTAAAGTAGATACGGAGGTCCAACCTGGCATCCGGTGTAGATGTAACATAGCAAACATAAATCCAGGACATCCTGCAATTAGTATATGTTATGCTTCGTATGGTGTGTATTAATTTGTGGGAtacattcaaccgaaatgtgtcttctgcatttaacccaacccctcaatCAGAGGTGCAATCGacgtcttgctcaagggcagaacggcagattttccCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474630.2 True 965 mRNA 0.50 3 39050749 39053399

Neighbor

gene id symbol gene type direction distance location
LOC118965515 NA coding downstream 226704 38822129 ~ 38826089 (-)
LOC110530913 NA coding downstream 248797 38787513 ~ 38801952 (-)
trnal-uaa-3 NA coding downstream 610469 38440198 ~ 38440280 (-)
LOC110529893 LOC106571757 coding downstream 663441 38330693 ~ 38387308 (-)
LOC100136309 LOC100136309 coding downstream 748460 38284903 ~ 38302289 (-)
slc22a16 LOC106571810 coding upstream 905970 39956961 ~ 40017167 (-)
LOC110530919 cdc40 coding upstream 1078792 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding upstream 1090512 40143911 ~ 40145193 (-)
armc2 armc2 coding upstream 1584872 40638271 ~ 40669501 (-)
LOC110529912 LOC106571799 coding upstream 1670998 40724397 ~ 40779631 (-)
G705292 NA non-coding downstream 283360 38764581 ~ 38767389 (-)
G705271 NA non-coding downstream 296609 38753922 ~ 38754140 (-)
G705266 NA non-coding downstream 301355 38749014 ~ 38749394 (-)
G705261 NA non-coding downstream 304671 38745876 ~ 38746078 (-)
G706700 NA non-coding upstream 187464 39240863 ~ 39241112 (-)
G706703 NA non-coding upstream 191667 39245066 ~ 39245432 (-)
G706797 NA non-coding upstream 335883 39389282 ~ 39389528 (-)
G706800 NA non-coding upstream 343411 39396810 ~ 39397157 (-)
G706816 NA non-coding upstream 374750 39428149 ~ 39428369 (-)
G704874 NA other downstream 736946 38313489 ~ 38313803 (-)
G704702 NA other downstream 1012403 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 1558592 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 1689156 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 3132574 35900623 ~ 35918175 (-)
G706683 stxbp5 other upstream 166245 39219644 ~ 39226313 (-)
G709272 NA other upstream 3666372 42719771 ~ 42720699 (-)
G709454 NA other upstream 4117361 43170760 ~ 43171082 (-)
G711133 NA other upstream 5485394 44538793 ~ 44539504 (-)

Expression


Co-expression Network